##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139078_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11501972 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57612546787629 34.0 31.0 34.0 31.0 34.0 2 32.71151825095731 34.0 31.0 34.0 31.0 34.0 3 32.69920384087181 34.0 31.0 34.0 31.0 34.0 4 36.220959501553295 37.0 35.0 37.0 35.0 37.0 5 36.17697956489548 37.0 35.0 37.0 35.0 37.0 6 36.21765745908615 37.0 37.0 37.0 35.0 37.0 7 36.17832846402339 37.0 37.0 37.0 35.0 37.0 8 36.154418650993065 37.0 37.0 37.0 35.0 37.0 9 37.886604053635324 39.0 38.0 39.0 35.0 39.0 10-11 37.81587474739115 39.0 38.0 39.0 35.0 39.0 12-13 37.79103000772389 39.0 38.0 39.0 35.0 39.0 14-15 39.1426661010825 40.0 39.0 41.0 36.0 41.0 16-17 39.111186455679075 40.0 38.0 41.0 36.0 41.0 18-19 39.07297644264827 40.0 38.5 41.0 36.0 41.0 20-21 39.06001530271227 40.0 39.0 41.0 36.0 41.0 22-23 38.94197381274028 40.0 38.0 41.0 35.0 41.0 24-25 38.80990429974858 40.0 38.0 41.0 35.0 41.0 26-27 38.76169803904841 40.0 38.0 41.0 34.5 41.0 28-29 38.7022557370928 40.0 38.0 41.0 35.0 41.0 30-31 38.6356381282898 40.0 38.0 41.0 35.0 41.0 32-33 38.52465599566631 40.0 38.0 41.0 34.0 41.0 34-35 38.331741732200214 40.0 38.0 41.0 34.0 41.0 36-37 38.46961767999456 40.0 38.0 41.0 34.0 41.0 38-39 38.45426830337607 40.0 38.0 41.0 34.0 41.0 40-41 38.42669653531037 40.0 38.0 41.0 34.0 41.0 42-43 38.46202161011986 40.0 38.0 41.0 34.0 41.0 44-45 38.404277103913344 40.0 38.0 41.0 34.0 41.0 46-47 38.34986050455292 40.0 38.0 41.0 34.0 41.0 48-49 38.19839385682455 40.0 38.0 41.0 33.0 41.0 50-51 38.19500901595795 40.0 38.0 41.0 33.0 41.0 52-53 38.1051367456879 40.0 37.0 41.0 33.0 41.0 54-55 37.96168562830244 40.0 37.0 41.0 33.0 41.0 56-57 37.79469022359453 40.0 37.0 41.0 33.0 41.0 58-59 37.63666374594558 39.5 36.0 41.0 33.0 41.0 60-61 37.45885755526488 39.0 36.0 41.0 32.0 41.0 62-63 37.24998526634375 39.0 35.5 40.5 32.0 41.0 64-65 36.96297352606522 38.5 35.0 40.0 31.5 41.0 66-67 36.61198796241912 38.0 35.0 40.0 31.0 41.0 68-69 36.28078286495341 37.0 35.0 40.0 31.0 41.0 70-71 35.976984657749725 37.0 35.0 39.5 31.0 41.0 72-73 35.64896218181923 36.0 34.0 39.0 30.5 41.0 74-75 35.27876958247708 36.0 34.0 39.0 30.0 40.0 76-77 34.31481782055067 35.0 33.0 37.0 29.0 39.0 78-79 34.59465522223797 35.0 34.0 37.0 30.0 39.0 80-81 34.39474264323104 35.0 34.0 37.0 30.0 39.0 82-83 34.11841750543272 35.0 34.0 36.0 29.0 38.5 84-85 33.867835145004946 35.0 33.0 36.0 29.0 37.0 86-87 33.62795001352552 35.0 33.0 35.5 29.0 37.0 88-89 33.39213630605864 35.0 33.0 35.0 29.0 36.5 90-91 33.20809745665515 35.0 33.0 35.0 29.0 36.0 92-93 33.11671040438445 35.0 33.0 35.0 29.0 36.0 94-95 33.038634860933996 34.5 33.0 35.0 29.0 36.0 96-97 33.0162585489458 34.0 33.0 35.0 29.0 35.0 98-99 33.136754347582865 34.0 33.0 35.0 29.0 35.0 100-101 31.28277812177796 32.5 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 13.0 20 46.0 21 308.0 22 1508.0 23 5191.0 24 13389.0 25 27629.0 26 49670.0 27 77999.0 28 112802.0 29 151139.0 30 195456.0 31 247130.0 32 311881.0 33 406860.0 34 560851.0 35 810155.0 36 1345264.0 37 2512205.0 38 3111149.0 39 1476803.0 40 84522.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.26079358579443 21.584667669973058 15.831061983295037 24.323476760937474 2 13.465410158585234 21.743702785839282 41.638538711535745 23.152348344039737 3 16.75781626973466 26.72210064884537 31.539597129882967 24.980485951537 4 11.776169916128186 19.085552136910266 39.239896306341606 29.89838164061994 5 12.730793072838829 38.209506719283745 35.98403577821886 13.07566442965857 6 29.234861506333264 38.88325217332335 18.83196530681266 13.049921013530726 7 25.818255481452308 33.21973540184855 23.324543534716227 17.637465581982912 8 24.133652907518815 37.196282515728605 21.210954086829634 17.459110489922946 9 25.173144222573313 17.046807277917214 21.586133230023513 36.19391526948596 10-11 23.610455787733475 27.257487966176186 29.286764728257065 19.84529151783327 12-13 24.505256804711813 24.710901062750363 29.405855197073283 21.37798693546454 14-15 21.64679740464584 26.25502991365715 27.09433202424948 25.003840657447522 16-17 21.14022627022421 29.435034764406222 27.751273422627637 21.673465542741933 18-19 21.137815373651378 28.55330931745049 29.55178162282875 20.757093686069382 20-21 21.91670712469326 27.55055543422012 29.557227183064107 20.975510258022513 22-23 21.65550310169072 27.659264215529955 29.31889754279838 21.36633513998095 24-25 21.512005033400904 27.78518270866061 29.392819054142983 21.309993203795507 26-27 21.497114942540737 27.98357384469798 29.25641250526842 21.262898707492866 28-29 21.36902713758478 27.974929566640526 29.272082364674507 21.383960931100194 30-31 21.740191050619334 27.827614456133816 29.234622826976853 21.197571666270004 32-33 21.536675206271365 27.891517784795568 29.238774817555658 21.333032191377406 34-35 21.61836849904085 27.985905738265853 29.217167062688443 21.178558700004853 36-37 21.587771933832066 27.872798141447912 29.146434847455872 21.392995077264153 38-39 21.50381858658802 27.926169807426948 29.176496739696127 21.3935148662889 40-41 21.662138785534623 27.855067837275925 29.061080654692162 21.421712722497286 42-43 21.62074943626761 27.90595807994933 28.944648895213486 21.528643588569576 44-45 21.64447552271953 28.087600811509706 28.67894011640624 21.588983549364528 46-47 21.769845760653478 27.96036340311052 28.365901225332063 21.903889610903935 48-49 21.772033844792674 28.12565986612967 28.29165848210218 21.810647806975478 50-51 21.66941661638459 28.216502658851883 28.25399670006034 21.86008402470319 52-53 21.781269715435695 28.19213680047285 28.19845789584761 21.828135588243846 54-55 21.757150525988642 28.134115331368136 28.15911980486151 21.94961433778171 56-57 21.848456250437287 28.222013009519664 28.044781349256116 21.884749390786933 58-59 21.72211597633544 28.40955540812097 28.175761262444343 21.69256735309925 60-61 21.930127614130406 28.40958483164559 27.971131349779 21.689156204445005 62-63 21.80579996977659 28.52110032709529 27.91041683931383 21.76268286381429 64-65 21.770859876318653 28.440675975605906 27.934008787862037 21.854455360213404 66-67 21.795588088647456 28.45342760198333 27.847311777019517 21.903672532349695 68-69 21.82707097274905 28.306734301932167 27.932027202242004 21.93416752307678 70-71 21.827839576157153 28.146561761737203 27.957192181491692 22.06840648061395 72-73 21.85277203533943 28.151041409695978 27.920780253467665 22.075406301496926 74-75 21.837551745309984 28.1837680547025 27.86730016336005 22.111380036627466 76-77 21.943984225877372 28.130061966767673 27.81354533485363 22.112408472501325 78-79 21.853296905040754 28.127505677079633 27.839929259651697 22.179268158227917 80-81 21.882622875331453 28.098207546394434 27.844391263958247 22.17477831431587 82-83 21.869084052959906 28.153082354033813 27.92094545204218 22.0568881409641 84-85 22.004032272271637 28.11482077517577 27.872831588386283 22.008315364166307 86-87 21.900638979792184 28.06223580954296 27.926101669917692 22.111023540747173 88-89 21.921532016225466 28.027663667447513 27.932041665820257 22.118762650506763 90-91 21.94517563399835 28.087970774134764 27.970774134764348 21.996079457102535 92-93 22.032946767616956 27.978174289345148 28.009293353235957 21.979585589801935 94-95 21.898376610295443 27.995970997148362 28.078168624214904 22.027483768341288 96-97 21.753951269502046 28.02870886372825 28.210972985617293 22.00636688115241 98-99 21.92317393414058 28.532319840476717 28.253460140814763 21.291046084567938 100-101 20.514857921075063 32.059587575572095 26.08717242205836 21.338382081294487 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2272.0 1 2014.5 2 2738.5 3 4000.0 4 5467.0 5 8342.5 6 10654.5 7 12697.5 8 14376.0 9 14589.5 10 13663.5 11 12853.5 12 14743.0 13 20705.5 14 34230.5 15 52523.0 16 67258.5 17 74801.0 18 75081.0 19 70817.5 20 64867.0 21 59614.0 22 57823.0 23 62220.5 24 73413.0 25 90546.5 26 111594.5 27 135767.5 28 162313.5 29 190273.0 30 217948.0 31 244838.5 32 272216.5 33 298682.0 34 325084.5 35 349830.0 36 373949.0 37 395290.0 38 410729.5 39 425080.0 40 440334.0 41 453983.0 42 461587.5 43 467651.5 44 474382.5 45 478151.0 46 482285.5 47 483102.0 48 481707.5 49 470659.0 50 451009.0 51 432709.0 52 408774.5 53 380815.0 54 352645.5 55 322616.5 56 291650.5 57 260448.5 58 228280.5 59 194406.0 60 158980.5 61 127066.5 62 99654.5 63 76107.5 64 56447.0 65 41690.5 66 30976.5 67 23103.5 68 17240.0 69 12459.5 70 8864.5 71 6315.0 72 4499.5 73 3049.0 74 2000.5 75 1269.0 76 797.5 77 525.0 78 336.5 79 221.5 80 158.0 81 114.0 82 86.5 83 57.0 84 33.0 85 22.0 86 18.5 87 18.5 88 16.5 89 11.0 90 7.0 91 4.5 92 2.5 93 2.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.738832262850231E-5 2 0.016058115947421885 3 1.738832262850231E-5 4 1.3041241971376735E-4 5 1.738832262850231E-5 6 1.738832262850231E-5 7 1.738832262850231E-5 8 0.0 9 0.0 10-11 1.4780074234226965E-4 12-13 6.129383726547065E-4 14-15 3.042956459987905E-4 16-17 0.0016823202143075987 18-19 4.347080657125578E-6 20-21 0.0 22-23 2.652032548178084E-4 24-25 0.009340212275021768 26-27 0.01997771525661969 28-29 0.34595728054418806 30-31 0.3221704580941652 32-33 0.3161030770409969 34-35 0.18498335259258372 36-37 0.04430279465808505 38-39 0.035991590412872684 40-41 0.014438332844348013 42-43 0.012972043924406432 44-45 0.016653399187713296 46-47 0.010860585598945566 48-49 0.006369287223375504 50-51 0.003494062691929838 52-53 0.0012950597211881353 54-55 7.534298954201633E-5 56-57 2.230936163945138E-4 58-59 0.0010867570609167548 60-61 9.322852257572149E-4 62-63 2.486112987205634E-4 64-65 7.383015382955531E-5 66-67 0.0034681757062402434 68-69 0.005771126385504299 70-71 0.007114330081319997 72-73 0.010822434073339103 74-75 0.007930025084741433 76-77 0.0060262252082249786 78-79 0.0038005886347431024 80-81 0.0048828067297001735 82-83 0.0017563163770684023 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0026672776878657375 92-93 0.015100822711075684 94-95 0.0013668578397414693 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 188.0 20-21 816.0 22-23 1537.0 24-25 3204.0 26-27 4616.0 28-29 8326.0 30-31 21733.0 32-33 29028.0 34-35 42671.0 36-37 58430.0 38-39 68972.0 40-41 75340.0 42-43 88775.0 44-45 105228.0 46-47 104667.0 48-49 91811.0 50-51 83071.0 52-53 74957.0 54-55 82175.0 56-57 89493.0 58-59 92610.0 60-61 94244.0 62-63 96113.0 64-65 106277.0 66-67 113498.0 68-69 106055.0 70-71 103086.0 72-73 101482.0 74-75 103060.0 76-77 103687.0 78-79 110533.0 80-81 112746.0 82-83 112729.0 84-85 116831.0 86-87 124444.0 88-89 135534.0 90-91 149411.0 92-93 161147.0 94-95 193969.0 96-97 296142.0 98-99 1097677.0 100-101 6835659.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.75577242364432 #Duplication Level Percentage of deduplicated Percentage of total 1 88.92093519548409 74.4764161193059 2 7.52523923294191 12.605644492555246 3 1.9548516670061764 4.911903340312531 4 0.7393454543742339 2.4769779847609694 5 0.3322190114607241 1.3912629959356244 6 0.1851587427423009 0.9304868111623353 7 0.10126282168789161 0.5936942093786985 8 0.06287870318720082 0.42131634835528564 9 0.042326980356866974 0.3190616040734832 >10 0.1331553768968472 1.6702741146187507 >50 0.001989536575836574 0.10303168490610821 >100 6.026193394616309E-4 0.08096062350003984 >500 3.46579464359251E-5 0.01896967113502561 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.694161314251157E-6 2 0.0 1.7388322628502314E-5 0.0 0.0 8.694161314251157E-6 3 0.0 1.7388322628502314E-5 0.0 0.0 8.694161314251157E-6 4 0.0 3.477664525700463E-5 0.0 1.7388322628502314E-5 8.694161314251157E-6 5 0.0 4.3470806571255784E-5 0.0 2.6082483942753467E-5 8.694161314251157E-6 6 1.1302409708526503E-4 4.3470806571255784E-5 0.0 5.2164967885506935E-5 8.694161314251157E-6 7 1.1302409708526503E-4 5.2164967885506935E-5 0.0 5.2164967885506935E-5 1.7388322628502314E-5 8 1.1302409708526503E-4 6.085912919975809E-5 0.0 5.2164967885506935E-5 1.7388322628502314E-5 9 1.1302409708526503E-4 1.391065810280185E-4 0.0 7.82474518282604E-5 1.7388322628502314E-5 10-11 1.2171825839951618E-4 1.391065810280185E-4 0.0 1.2606533905664178E-4 1.7388322628502314E-5 12-13 1.2171825839951618E-4 1.391065810280185E-4 0.0 2.2604819417053004E-4 2.173540328562789E-5 14-15 1.4780074234226965E-4 1.782303069421487E-4 0.0 2.8256024271316256E-4 3.91237259141302E-5 16-17 2.3474235548478123E-4 1.8257738759927427E-4 0.0 4.6948471096956246E-4 5.651204854263251E-5 18-19 2.5213067811328356E-4 1.8692446825639984E-4 0.0 7.085741471114693E-4 7.390037117113482E-5 20-21 2.738660813989114E-4 1.999657102277766E-4 0.0 0.0012302238259665386 9.563577445676272E-5 22-23 2.956014846845393E-4 2.5213067811328356E-4 0.0 0.002060516231477524 9.998285511388829E-5 24-25 3.173368879701672E-4 2.78213162056037E-4 0.0 0.003464623283729086 1.0432993577101387E-4 26-27 3.477664525700463E-4 2.956014846845393E-4 0.0 0.0062858786302035854 1.0432993577101387E-4 28-29 3.564606138842974E-4 2.956014846845393E-4 0.0 0.021052911622459175 1.0867701642813945E-4 30-31 3.564606138842974E-4 3.3037812994154395E-4 0.0 0.028908086369885094 1.1302409708526503E-4 32-33 3.6950185585567414E-4 3.477664525700463E-4 0.0 0.03263788157369884 1.1302409708526503E-4 34-35 3.868901784841764E-4 3.8689017848417647E-4 0.0 0.037558776877564995 1.1302409708526503E-4 36-37 4.0862558176980434E-4 4.3036098505543226E-4 0.0 0.04510965597899212 1.1302409708526503E-4 38-39 4.0862558176980434E-4 4.43402227026809E-4 0.0 0.05892467830733721 1.3041241971376735E-4 40-41 4.5209638834106013E-4 5.042613562265671E-4 0.0 0.08676338283556942 1.3041241971376735E-4 42-43 4.6079054965531127E-4 5.216496788550694E-4 0.0 0.10019151498543033 1.391065810280185E-4 44-45 4.6948471096956246E-4 5.825088080548275E-4 0.0 0.11914043956984072 1.5214782299939524E-4 46-47 4.6948471096956246E-4 6.3902085659746E-4 0.0 0.14291897076431764 1.564949036565208E-4 48-49 4.6948471096956246E-4 6.477150179117111E-4 0.0 0.16194179571989914 1.564949036565208E-4 50-51 4.8687303359806473E-4 7.303095503970971E-4 0.0 0.18505522357383586 1.6518906497077197E-4 52-53 5.042613562265671E-4 7.303095503970971E-4 0.0 0.21149851521113075 1.6518906497077197E-4 54-55 5.042613562265671E-4 7.52044953682725E-4 0.0 0.28639871493340446 1.6518906497077197E-4 56-57 5.042613562265671E-4 7.737803569683529E-4 0.0 0.353261162520653 1.6953614562789757E-4 58-59 5.216496788550694E-4 7.82474518282604E-4 0.0 0.4036351331754242 1.7388322628502314E-4 60-61 5.56426324112074E-4 8.085570022253575E-4 0.0 0.43023057263571846 1.8257738759927427E-4 62-63 5.86855888711953E-4 8.302924055109854E-4 0.0 0.4460930699535697 1.8692446825639984E-4 64-65 5.955500500262041E-4 9.215810993106225E-4 0.0 0.45775194027598054 1.9127154891352544E-4 66-67 6.259796146260832E-4 9.259281799677481E-4 0.0 0.4649289704408948 1.9127154891352544E-4 68-69 6.346737759403344E-4 9.607048252247527E-4 0.0 0.4720190589926666 2.173540328562789E-4 70-71 6.564091792259622E-4 9.78093147853255E-4 0.0 0.4783527555100986 2.390894361419068E-4 72-73 6.781445825115902E-4 9.867873091675063E-4 0.0 0.4824955233763393 2.4343651679903237E-4 74-75 6.781445825115902E-4 0.001030258115738762 0.0 0.48629921895132416 2.564777587704091E-4 76-77 6.781445825115902E-4 0.0010693818416528922 0.0 0.48962908273468236 2.608248394275347E-4 78-79 6.781445825115902E-4 0.0010867701642813946 0.0 0.49258075050087063 2.608248394275347E-4 80-81 6.868387438258414E-4 0.0010911172449385202 0.0 0.4937979330848658 2.738660813989114E-4 82-83 6.868387438258414E-4 0.0010954643255956457 0.0 0.494289153199121 2.8690732337028816E-4 84-85 6.955329051400926E-4 0.0010998114062527712 0.0 0.4946760433776052 2.8690732337028816E-4 86-87 6.998799857972181E-4 0.0011389351321669015 0.0 0.49483688536191883 2.999485653416649E-4 88-89 7.042270664543436E-4 0.0011824059387381572 0.0 0.49489774449111856 3.2603104928441835E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15695 0.0 48.062637 1 GTATCAA 28245 0.0 35.589405 1 TCAACGC 33880 0.0 29.136368 4 ATCAACG 33930 0.0 28.980473 3 CAACGCA 34980 0.0 28.232306 5 TATCAAC 36040 0.0 27.679132 2 AACGCAG 35860 0.0 27.575233 6 ACGCAGA 41220 0.0 23.979185 7 CGCAGAG 41420 0.0 23.832558 8 GCAGAGT 47690 0.0 20.529705 9 GTACATG 31755 0.0 20.066418 1 GAGTACT 28660 0.0 19.532944 12-13 TACATGG 31870 0.0 19.152016 2 AGAGTAC 42675 0.0 18.911198 10-11 ACATGGG 32130 0.0 18.489658 3 CAGAGTA 46270 0.0 18.449724 10-11 GTACTTT 32595 0.0 17.110155 14-15 AGTACTT 31615 0.0 16.986551 12-13 GTGGTAT 8225 0.0 16.41624 1 CATGGGG 22945 0.0 16.239975 4 >>END_MODULE