##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139076_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11385978 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.66220758550561 34.0 31.0 34.0 31.0 34.0 2 32.778054111820694 34.0 31.0 34.0 31.0 34.0 3 33.409805376402446 34.0 31.0 34.0 31.0 37.0 4 36.190695959539006 37.0 35.0 37.0 35.0 37.0 5 36.1642238374253 37.0 35.0 37.0 35.0 37.0 6 36.204600079149984 37.0 37.0 37.0 35.0 37.0 7 36.21479349424354 37.0 37.0 37.0 35.0 37.0 8 36.47917456014758 37.0 37.0 37.0 35.0 39.0 9 37.844692304868325 39.0 38.0 39.0 35.0 39.0 10-11 37.79415176280861 39.0 38.0 39.0 35.0 39.0 12-13 37.928352180199184 39.0 38.0 39.0 35.0 40.0 14-15 39.08152606653552 40.0 38.5 41.0 36.0 41.0 16-17 39.04059853268643 40.0 38.0 41.0 36.0 41.0 18-19 39.02062396396691 40.0 38.5 41.0 35.0 41.0 20-21 38.99743503599749 40.0 38.5 41.0 35.0 41.0 22-23 38.88292370158827 40.0 38.0 41.0 35.0 41.0 24-25 38.73468757168871 40.0 38.0 41.0 34.5 41.0 26-27 38.70275194389192 40.0 38.0 41.0 34.5 41.0 28-29 38.63730403393294 40.0 38.0 41.0 35.0 41.0 30-31 38.55441363077278 40.0 38.0 41.0 34.0 41.0 32-33 38.426612664907026 40.0 38.0 41.0 34.0 41.0 34-35 38.242652827593986 40.0 38.0 41.0 34.0 41.0 36-37 38.39204264422972 40.0 38.0 41.0 34.0 41.0 38-39 38.348669693248425 40.0 38.0 41.0 34.0 41.0 40-41 38.34067648705681 40.0 38.0 41.0 34.0 41.0 42-43 38.35637291718893 40.0 38.0 41.0 34.0 41.0 44-45 38.29650191398116 40.0 38.0 41.0 33.5 41.0 46-47 38.22695232977807 40.0 38.0 41.0 33.0 41.0 48-49 38.09461658574648 40.0 37.5 41.0 33.0 41.0 50-51 38.07666918621439 40.0 37.0 41.0 33.0 41.0 52-53 37.9761827040844 40.0 37.0 41.0 33.0 41.0 54-55 37.818395773781276 40.0 37.0 41.0 33.0 41.0 56-57 37.64240189272304 39.5 36.0 41.0 33.0 41.0 58-59 37.47721050010684 39.0 36.0 41.0 32.0 41.0 60-61 37.28033548805681 39.0 35.5 41.0 32.0 41.0 62-63 37.05475024508537 39.0 35.0 40.0 32.0 41.0 64-65 36.75138615138368 38.0 35.0 40.0 31.0 41.0 66-67 36.393223886418625 37.5 35.0 40.0 31.0 41.0 68-69 36.06348901567844 37.0 35.0 40.0 31.0 41.0 70-71 35.76159782802097 36.5 34.0 39.0 30.5 41.0 72-73 35.43085236376881 36.0 34.0 39.0 30.0 40.5 74-75 34.97932259778183 35.5 34.0 38.5 29.5 40.0 76-77 34.21810693589093 35.0 33.0 37.0 29.0 39.0 78-79 34.43669416381525 35.0 34.0 37.0 29.5 39.0 80-81 34.233106085295 35.0 34.0 36.5 29.5 39.0 82-83 33.972478302605026 35.0 33.5 36.0 29.0 37.5 84-85 33.740443307007354 35.0 33.0 36.0 29.0 37.0 86-87 33.50924124736899 35.0 33.0 35.0 29.0 37.0 88-89 33.285294054511596 35.0 33.0 35.0 29.0 36.0 90-91 33.12152569677677 35.0 33.0 35.0 29.0 36.0 92-93 33.0406123927428 35.0 33.0 35.0 29.0 36.0 94-95 32.97435968618581 34.0 32.5 35.0 29.0 35.5 96-97 32.97245967628664 34.0 32.0 35.0 29.0 35.0 98-99 33.04836863630911 34.0 32.0 35.0 29.0 35.0 100-101 30.876788009137904 32.5 28.0 34.5 23.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 4.0 19 14.0 20 79.0 21 375.0 22 1652.0 23 5482.0 24 14017.0 25 29011.0 26 51310.0 27 80042.0 28 113900.0 29 153965.0 30 198134.0 31 249227.0 32 316597.0 33 413645.0 34 575507.0 35 825983.0 36 1372411.0 37 2517176.0 38 2924049.0 39 1436088.0 40 107307.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.787785666317745 0.006815642320712157 26.606879899072283 30.59851879228926 2 14.210952838713938 24.799518507119096 37.92351100504963 23.066017649117335 3 15.480307385344188 25.073570813340524 33.92595746571943 25.520164335595858 4 12.695073444787477 24.153870799566622 37.014700902022554 26.136354853623338 5 17.21850058677457 36.561088230132974 32.18695212197042 14.033459061122045 6 27.706290212853112 37.86034466616558 20.067180901695366 14.366184219285937 7 25.898293813072122 33.28874631190972 22.38420709550189 18.428752779516273 8 24.21605980760369 32.320897890448926 21.963007654064292 21.500034647883094 9 23.744852768427823 20.605692529625262 23.75030684680056 31.899147855146353 10-11 24.58635322780417 26.231428595894812 28.551221340507087 20.63099683579393 12-13 24.869289270274013 24.428587243837775 28.588284596476992 22.11383888941122 14-15 22.258973264392633 26.8135062070739 26.756993428858035 24.17052709967543 16-17 21.22284057033666 29.167467920462165 27.708396286374743 21.90129522282643 18-19 21.36419837877754 28.058231459472598 29.687648208638418 20.889921953111443 20-21 22.11840857313613 27.197031035521128 29.627429791625215 21.057130599717528 22-23 21.982989087025608 27.060205252145074 29.3949345675669 21.56187109326242 24-25 21.63225634334706 27.40113190450147 29.604704241926616 21.361907510224857 26-27 21.592646489060456 27.573282460540383 29.45485457408768 21.379216476311477 28-29 21.434356799936385 27.409900618383233 29.545676283877604 21.610066297802778 30-31 21.638688191919258 27.354455213511812 29.56915355154031 21.43770304302862 32-33 21.456423948535416 27.595645672513896 29.43834632290801 21.509584056042677 34-35 21.65282722619052 27.48271519809171 29.391344532474157 21.473113043243604 36-37 21.629478994399225 27.587337714235883 29.318697803953132 21.464485487411764 38-39 21.64125812914027 27.73602347262688 29.22845720914048 21.394261189092372 40-41 21.84836085443989 27.447019985299566 29.01929424263364 21.685324917626907 42-43 21.805557314861503 27.58745175717301 28.962063055610965 21.644927872354522 44-45 21.861223932029418 27.914090882763233 28.533655676767893 21.69102950843946 46-47 22.003062689828397 27.64210337621677 28.196051280488888 22.158782653465945 48-49 21.91944814980207 27.923403919002677 28.13196422691456 22.0251837042807 50-51 21.910670266591563 28.136843930494575 27.858101264504764 22.094384538409095 52-53 22.080231054204464 27.899730937352047 27.868678976911742 22.151359031531744 54-55 21.951540357066524 27.939439538863404 27.968499641546945 22.140520462523128 56-57 22.050787382269572 28.237962142319915 27.648801965509897 22.062448509900616 58-59 22.05159387456109 28.117636059537016 27.836016366266087 21.994753699635808 60-61 22.110856138337674 28.244661219397422 27.74724041809697 21.897242224167936 62-63 21.980414674441278 28.46033181093508 27.615123042303168 21.944130472320477 64-65 22.044002557632467 28.196698906350466 27.64708228448301 22.112216251534058 66-67 21.96422796635588 28.200235272907882 27.682227619056583 22.153309141679657 68-69 21.998622254411956 28.226674649554056 27.67501944449389 22.099683651540094 70-71 22.03695542699384 27.85208622395726 27.70310766070052 22.40785068834838 72-73 22.05077579324088 27.893951805876828 27.723495931263887 22.331776469618404 74-75 21.95302880997406 28.08799429881211 27.680749650144577 22.278227241069253 76-77 22.21321206016434 27.866932985868125 27.490964488148762 22.42889046581877 78-79 21.98485284113333 27.886406139009818 27.683389542126886 22.445351477729975 80-81 22.097153958636483 28.017781380374373 27.5633439576115 22.321720703377643 82-83 22.144882092255276 27.77763415285713 27.681242933086963 22.39624082180063 84-85 22.17023889167338 27.860613979608946 27.719595268253332 22.249551860464344 86-87 22.070413724794047 27.9291956773055 27.653013812591126 22.347376785309322 88-89 22.126444098744404 27.701315166908174 27.722769756076183 22.449470978271233 90-91 22.08587796526318 27.765954889642302 27.81037882702371 22.337788318070814 92-93 22.104713024266296 27.752737283194545 27.858908161576213 22.283641530962946 94-95 22.028503299158526 27.611840893754643 27.911103888749984 22.448551918336847 96-97 21.836315580531522 27.78726702660092 28.066922923737863 22.309494469129692 98-99 22.179933153070294 28.708397541907843 27.927358269474823 21.184311035547047 100-101 20.57865613722256 31.63372788148427 25.389584780727976 22.3980312005652 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2993.0 1 2661.0 2 3659.0 3 5254.5 4 7127.0 5 11103.5 6 14228.0 7 17073.0 8 19579.0 9 19774.0 10 18014.5 11 16050.0 12 17363.0 13 22938.5 14 38772.5 15 64044.0 16 86249.5 17 98002.5 18 98216.0 19 90761.0 20 80256.5 21 69582.5 22 62669.0 23 63449.5 24 71897.5 25 86868.5 26 106855.0 27 129003.5 28 153470.5 29 179208.5 30 204424.0 31 230242.5 32 256585.0 33 282342.0 34 308045.0 35 331278.0 36 355268.5 37 376978.0 38 391387.0 39 403206.5 40 415100.0 41 427579.5 42 435426.0 43 443191.0 44 454300.0 45 464087.0 46 473810.0 47 479505.5 48 477443.0 49 470364.0 50 461684.5 51 447042.5 52 424315.5 53 400624.5 54 376548.5 55 348803.0 56 320269.0 57 290735.0 58 258474.0 59 223054.5 60 185129.0 61 150620.0 62 119725.0 63 91715.5 64 68536.5 65 51811.5 66 39570.5 67 30002.5 68 23048.0 69 16799.0 70 11864.5 71 8745.5 72 6226.0 73 4300.0 74 2983.0 75 2020.5 76 1316.5 77 831.0 78 531.0 79 346.5 80 217.5 81 138.5 82 99.0 83 69.0 84 46.5 85 35.0 86 28.0 87 21.0 88 16.5 89 12.0 90 8.0 91 6.0 92 4.5 93 3.0 94 1.5 95 1.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0035482239645992643 2 0.012172867363699456 3 7.904459327077568E-5 4 8.782732585641742E-5 5 3.513093034256697E-5 6 3.513093034256697E-5 7 3.513093034256697E-5 8 8.782732585641743E-6 9 2.634819775692523E-5 10-11 2.2395968093386444E-4 12-13 4.698761933318332E-4 14-15 5.050071236744002E-4 16-17 0.0015501523013657674 18-19 1.7565465171283486E-5 20-21 7.026464696208824E-5 22-23 6.719712575494104E-4 24-25 0.011848215789177496 26-27 0.060243195808581965 28-29 0.3386189310050405 30-31 0.3197604769320752 32-33 0.3088485132153119 34-35 0.15749579339863035 36-37 0.04318936151949938 38-39 0.03431416139431729 40-41 0.016417474789079047 42-43 0.014615038163563963 44-45 0.017828905208088826 46-47 0.011561081357034327 48-49 0.00669721986723209 50-51 0.003998383150841928 52-53 0.0012610504339140285 54-55 9.66896509247374E-5 56-57 3.171426327034555E-4 58-59 0.001275796645108002 60-61 0.0010497988242153663 62-63 3.1166715435873804E-4 64-65 2.5911584795203983E-4 66-67 0.0042729254792540985 68-69 0.005303945484809505 70-71 0.007336465033080454 72-73 0.010347350761177656 74-75 0.007271504558381692 76-77 0.005296356510356695 78-79 0.0036669770711213515 80-81 0.004347022163938682 82-83 0.0014286695888629083 84-85 0.0 86-87 2.3319272200850755E-5 88-89 2.131834290625626E-4 90-91 0.0045843594426961095 92-93 0.013708482038849704 94-95 0.00114190081436978 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 266.0 20-21 905.0 22-23 1865.0 24-25 5115.0 26-27 6332.0 28-29 12813.0 30-31 27045.0 32-33 36221.0 34-35 53698.0 36-37 71031.0 38-39 81828.0 40-41 88634.0 42-43 107977.0 44-45 126470.0 46-47 122387.0 48-49 103595.0 50-51 90924.0 52-53 83677.0 54-55 92573.0 56-57 96846.0 58-59 100088.0 60-61 103110.0 62-63 103992.0 64-65 113301.0 66-67 120772.0 68-69 113143.0 70-71 110485.0 72-73 107734.0 74-75 109227.0 76-77 111143.0 78-79 116023.0 80-81 117948.0 82-83 117717.0 84-85 122713.0 86-87 130560.0 88-89 140677.0 90-91 152692.0 92-93 166840.0 94-95 204706.0 96-97 356965.0 98-99 1272733.0 100-101 6183207.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.03175072954743 #Duplication Level Percentage of deduplicated Percentage of total 1 88.69937053956176 73.64864024508655 2 7.521742431425704 12.490868852359982 3 2.0327045417250376 5.063370504459967 4 0.7868908627598415 2.6134770387213475 5 0.37591898811846663 1.5606605857978113 6 0.19534691624828535 0.9731997873428044 7 0.10986878282414876 0.6385818171889452 8 0.07194949521190494 0.47792740412413254 9 0.04678195255227911 0.3495948680666119 >10 0.15630083361407382 1.9614551945249636 >50 0.0025786913434695056 0.14036983029020242 >100 5.273016534772244E-4 0.07354791752509483 >500 1.8662961643137606E-5 0.00830595451159065 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.782732585641743E-6 2 0.0 6.14791280994922E-5 0.0 0.0 8.782732585641743E-6 3 0.0 6.14791280994922E-5 0.0 0.0 8.782732585641743E-6 4 0.0 6.14791280994922E-5 0.0 0.0 8.782732585641743E-6 5 0.0 8.782732585641742E-5 0.0 0.0 8.782732585641743E-6 6 0.0 8.782732585641742E-5 0.0 8.782732585641743E-6 5.2696395513850456E-5 7 0.0 8.782732585641742E-5 0.0 8.782732585641743E-6 5.2696395513850456E-5 8 0.0 1.0539279102770091E-4 0.0 1.7565465171283486E-5 7.026186068513395E-5 9 0.0 1.4930645395590963E-4 0.0 3.513093034256697E-5 7.026186068513395E-5 10-11 8.782732585641743E-6 1.4930645395590963E-4 0.0 4.830502922102959E-5 7.904459327077568E-5 12-13 8.782732585641743E-6 1.5369782024873049E-4 0.0 6.14791280994922E-5 7.904459327077568E-5 14-15 8.782732585641743E-6 2.6787334386207316E-4 0.0 7.026186068513395E-5 1.3174098878462615E-4 16-17 8.782732585641743E-6 3.337438382543862E-4 0.0 1.1417552361334265E-4 1.5808918654155137E-4 18-19 8.782732585641743E-6 3.337438382543862E-4 0.0 3.8644023376823664E-4 1.5808918654155137E-4 20-21 8.782732585641743E-6 3.337438382543862E-4 0.0 9.090128226139204E-4 1.5808918654155137E-4 22-23 8.782732585641743E-6 3.337438382543862E-4 0.0 0.0014096285799954998 1.8004601800565573E-4 24-25 8.782732585641743E-6 3.6009203601131145E-4 0.0 0.0022483795419242863 2.0200284946976009E-4 26-27 8.782732585641743E-6 3.7765750118259493E-4 0.0 0.006367481124590263 2.2395968093386444E-4 28-29 8.782732585641743E-6 3.864402337682367E-4 0.0 0.023853901702602973 2.327424135195062E-4 30-31 8.782732585641743E-6 4.43527995574908E-4 0.0 0.03165735960494566 2.3713377981232707E-4 32-33 8.782732585641743E-6 4.479193618677289E-4 0.0 0.03456005272450026 2.634819775692523E-4 34-35 8.782732585641743E-6 5.357466877241463E-4 0.0 0.03795018750255797 2.72264710154894E-4 36-37 8.782732585641743E-6 6.455308450446682E-4 0.0 0.043926837027087176 2.72264710154894E-4 38-39 8.782732585641743E-6 6.938358742656977E-4 0.0 0.05542343398169222 2.8983017532617755E-4 40-41 8.782732585641743E-6 7.992286652933986E-4 0.0 0.07234775967422385 2.9861290791181926E-4 42-43 8.782732585641743E-6 9.002300900282786E-4 0.0 0.08186385043076669 3.0739564049746097E-4 44-45 8.782732585641743E-6 9.83666049591875E-4 0.0 0.09523116942611343 3.205697393759236E-4 46-47 8.782732585641743E-6 9.83666049591875E-4 0.0 0.11177783761746246 3.2935247196156536E-4 48-49 8.782732585641743E-6 9.92448782177517E-4 0.0 0.12637473917479902 3.381352045472071E-4 50-51 8.782732585641743E-6 0.0010758847417411135 0.0 0.14323758573923118 3.42526570840028E-4 52-53 8.782732585641743E-6 0.0011066243057908595 0.0 0.16738570898345317 3.820488674754158E-4 54-55 8.782732585641743E-6 0.0011154070383765013 0.0 0.2290624485661223 4.2157116411080365E-4 56-57 8.782732585641743E-6 0.0011373638698406055 0.0 0.27310785248311564 4.3474526298926627E-4 58-59 8.782732585641743E-6 0.0011505379687190682 0.0 0.32191788882781963 4.479193618677289E-4 60-61 8.782732585641743E-6 0.001190060265354456 0.0 0.3421489133388454 4.5670209445337065E-4 62-63 8.782732585641743E-6 0.001194451631647277 0.0 0.35462039361045666 4.6548482703901237E-4 64-65 8.782732585641743E-6 0.0013349753530175448 0.0 0.3651860209109837 4.6548482703901237E-4 66-67 8.782732585641743E-6 0.001370106283360112 0.0 0.3719706818333919 4.6548482703901237E-4 68-69 8.782732585641743E-6 0.0014140199462883206 0.0 0.3785796881040873 4.6548482703901237E-4 70-71 8.782732585641743E-6 0.0014403681440452458 0.0 0.3845782944600806 4.8305029221029584E-4 72-73 8.782732585641743E-6 0.0014535422429237084 0.0 0.38924192546305636 6.235740135805638E-4 74-75 8.782732585641743E-6 0.0014754990743878127 0.0 0.39306241413781057 6.235740135805638E-4 76-77 8.782732585641743E-6 0.0015194127373160215 0.0 0.39659307263723853 6.455308450446681E-4 78-79 8.782732585641743E-6 0.0015457609350729468 0.0 0.3998251182287547 6.587049439231307E-4 80-81 8.782732585641743E-6 0.0015545436676585884 0.0 0.4011952245121148 6.80661775387235E-4 82-83 8.782732585641743E-6 0.001567717766537051 0.0 0.401752928031303 7.114013394369811E-4 84-85 8.782732585641743E-6 0.001572109132829872 0.0 0.40208667186955743 7.201840720226229E-4 86-87 8.782732585641743E-6 0.0015940659642939762 0.0 0.40227989198644154 7.245754383154437E-4 88-89 8.782732585641743E-6 0.0016599364586862893 0.0 0.40236332794600516 7.333581709010855E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17975 0.0 51.59545 1 GTATCAA 33190 0.0 37.454975 1 ATCAACG 41265 0.0 29.65476 3 TCAACGC 43200 0.0 28.404251 4 TATCAAC 43995 0.0 27.922224 2 CAACGCA 44060 0.0 27.849833 5 AACGCAG 44400 0.0 27.674648 6 ACGCAGA 45045 0.0 27.287668 7 CGCAGAG 51845 0.0 23.708612 8 GCAGAGT 59035 0.0 20.736446 9 GTACATG 38740 0.0 19.832754 1 GAGTACT 35355 0.0 19.627647 12-13 GTGGTAT 8750 0.0 19.523544 1 TGGTATC 8385 0.0 19.42405 2 TACATGG 38870 0.0 19.205696 2 AGAGTAC 54310 0.0 19.1797 10-11 ACATGGG 38265 0.0 19.157192 3 CAGAGTA 57665 0.0 18.419569 10-11 AGTACTT 37855 0.0 18.137865 12-13 CTTATAC 11410 0.0 18.017826 1 >>END_MODULE