##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139073_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8680163 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55379720403868 34.0 31.0 34.0 31.0 34.0 2 32.68383485425331 34.0 31.0 34.0 31.0 34.0 3 32.671730242853734 34.0 31.0 34.0 31.0 34.0 4 36.2014835435694 37.0 35.0 37.0 35.0 37.0 5 36.15415563048759 37.0 35.0 37.0 35.0 37.0 6 36.19759306363256 37.0 37.0 37.0 35.0 37.0 7 36.15615778182967 37.0 37.0 37.0 35.0 37.0 8 36.13199475631967 37.0 36.0 37.0 35.0 37.0 9 37.862277240646286 39.0 38.0 39.0 35.0 39.0 10-11 37.78994253909748 39.0 38.0 39.0 35.0 39.0 12-13 37.75966614912646 39.0 38.0 39.0 35.0 39.0 14-15 39.10216530496029 40.0 38.5 41.0 36.0 41.0 16-17 39.07125684160539 40.0 38.0 41.0 36.0 41.0 18-19 39.02919415222963 40.0 38.5 41.0 36.0 41.0 20-21 39.010190979252066 40.0 38.5 41.0 35.0 41.0 22-23 38.89229672871497 40.0 38.0 41.0 35.0 41.0 24-25 38.75482463324964 40.0 38.0 41.0 34.5 41.0 26-27 38.70383070235458 40.0 38.0 41.0 34.5 41.0 28-29 38.65012061653832 40.0 38.0 41.0 35.0 41.0 30-31 38.58745944123032 40.0 38.0 41.0 34.5 41.0 32-33 38.48121076904583 40.0 38.0 41.0 34.0 41.0 34-35 38.28618144142442 40.0 38.0 41.0 34.0 41.0 36-37 38.425810190614015 40.0 38.0 41.0 34.0 41.0 38-39 38.41260954438157 40.0 38.0 41.0 34.0 41.0 40-41 38.37493052722907 40.0 38.0 41.0 34.0 41.0 42-43 38.405981794073696 40.0 38.0 41.0 34.0 41.0 44-45 38.33752062349883 40.0 38.0 41.0 34.0 41.0 46-47 38.27530343664733 40.0 38.0 41.0 33.0 41.0 48-49 38.112859720563335 40.0 38.0 41.0 33.0 41.0 50-51 38.109826752738414 40.0 37.0 41.0 33.0 41.0 52-53 38.0092952618598 40.0 37.0 41.0 33.0 41.0 54-55 37.851751461604614 40.0 37.0 41.0 33.0 41.0 56-57 37.67489855519856 39.5 36.0 41.0 33.0 41.0 58-59 37.49899624493693 39.0 36.0 41.0 32.0 41.0 60-61 37.30886885726548 39.0 35.5 41.0 32.0 41.0 62-63 37.0839806236464 39.0 35.0 40.0 32.0 41.0 64-65 36.77744519559732 38.0 35.0 40.0 31.0 41.0 66-67 36.40818536012168 37.5 35.0 40.0 31.0 41.0 68-69 36.063713760007204 37.0 35.0 40.0 31.0 41.0 70-71 35.75468045204199 36.5 34.0 39.0 30.5 41.0 72-73 35.426449395368984 36.0 34.0 39.0 30.0 40.5 74-75 35.06058123570952 35.5 34.0 38.5 30.0 40.0 76-77 34.11566493321196 35.0 32.5 37.0 29.0 39.0 78-79 34.401785960167345 35.0 34.0 37.0 29.5 39.0 80-81 34.215906519821615 35.0 34.0 36.5 29.0 39.0 82-83 33.953728760628785 35.0 33.5 36.0 29.0 37.5 84-85 33.7239513239187 35.0 33.0 36.0 29.0 37.0 86-87 33.49924722966172 35.0 33.0 35.0 29.0 37.0 88-89 33.27519642661001 35.0 33.0 35.0 29.0 36.0 90-91 33.10110101209105 35.0 33.0 35.0 29.0 36.0 92-93 33.02519739059392 35.0 33.0 35.0 29.0 36.0 94-95 32.956543172821654 34.0 32.5 35.0 29.0 35.5 96-97 32.942297333499894 34.0 32.0 35.0 29.0 35.0 98-99 33.06989997613094 34.0 32.5 35.0 29.0 35.0 100-101 31.208469144541887 32.5 29.0 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 12.0 20 45.0 21 250.0 22 1230.0 23 4200.0 24 10596.0 25 21990.0 26 39563.0 27 61700.0 28 88612.0 29 118631.0 30 152067.0 31 191537.0 32 242173.0 33 317706.0 34 440313.0 35 638371.0 36 1068319.0 37 1942274.0 38 2237331.0 39 1045623.0 40 57619.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.19807026643051 20.99156674725656 15.250095562732586 24.560267423580342 2 13.918262367260517 21.508134380139655 41.06988006003566 23.50372319256417 3 17.24925179967839 26.23581218875869 30.87859420135246 25.636341810210457 4 12.260198639355782 18.4117261527533 38.406062658112134 30.92201254977879 5 13.215145062960806 37.80065395092856 35.49904944170397 13.485151544406659 6 30.34657997703038 37.90895122797838 18.394831616602502 13.349637178388743 7 26.607916604311832 32.677585127741295 22.926429590418888 17.788068677527985 8 24.53447297412191 36.919391596608456 20.79176632878511 17.754369100484528 9 25.567679497225974 16.795285617941232 21.162058956964167 36.47497592786863 10-11 24.240971781001356 26.807403562958914 28.751887209257447 20.199737446782283 12-13 25.025604502429346 24.376379158153913 28.94220628899574 21.655810050420996 14-15 22.149531407489484 25.76816994835223 26.559216823962462 25.52308182019582 16-17 21.730752858034727 28.898503836922636 27.23572791391892 22.135015391123712 18-19 21.787931862569863 28.051074616916754 28.996097193105708 21.164896327407675 20-21 22.52053449893749 27.10607431763366 28.973894299534386 21.399496883894468 22-23 22.253491121383313 27.03664181778138 28.825845667377813 21.88402139345749 24-25 22.05637697349776 27.22595656878687 28.829689478547227 21.887976979168144 26-27 22.003637398442606 27.28656487116673 28.82680928460193 21.882988445788744 28-29 21.908242145315754 27.35888777488198 28.829292026682314 21.90357805311996 30-31 22.14677827228142 27.220618473585755 28.75913409852241 21.873469155610415 32-33 21.980152502936377 27.349146281329695 28.715113567467586 21.955587648266338 34-35 22.142348808664263 27.401160939103875 28.650344765548784 21.806145486683075 36-37 22.098461893398895 27.342741676576495 28.595465092944757 21.963331337079854 38-39 22.06577909183437 27.434099181941107 28.607047215109304 21.893074511115216 40-41 22.24388347698642 27.288989136808578 28.487337376260246 21.97979000994476 42-43 22.124971543204015 27.432690310844553 28.307113830276414 22.135224315675014 44-45 22.2198255819186 27.496683536481097 28.12110266787065 22.16238821372965 46-47 22.301919415716792 27.50975247821193 27.87609922205637 22.312228884014907 48-49 22.27903544385326 27.650785797684684 27.748823081351176 22.32135567711088 50-51 22.26227633083485 27.76543016746257 27.657246416089126 22.31504708561345 52-53 22.42895178869042 27.65940791067441 27.566178922619628 22.345461378015543 54-55 22.335027640633452 27.570266013624394 27.611431780486196 22.483274565255954 56-57 22.357419565527813 27.68340144845985 27.617575587174397 22.34160339883794 58-59 22.31954391420484 27.718374995016543 27.627412988876927 22.334668101901688 60-61 22.429003680792356 27.697927074454327 27.576641548293875 22.296427696459446 62-63 22.351559221723228 27.773621718446474 27.598081899395417 22.276737160434884 64-65 22.311543603595663 27.736276216621224 27.548964977343466 22.403215202439643 66-67 22.34795183738854 27.769467498802403 27.42669611342793 22.45588455038113 68-69 22.287852500159506 27.75342454002137 27.489918992719588 22.46880396709954 70-71 22.2868710790477 27.573020135064922 27.51845508753852 22.621653698348858 72-73 22.370702847465076 27.559289422914368 27.423034652867152 22.646973076753408 74-75 22.256072100309574 27.621542067031207 27.46175633156603 22.66062950109319 76-77 22.41195863147507 27.573627211743297 27.411272759890537 22.603141396891093 78-79 22.35290292615614 27.553628180451668 27.384802625898253 22.70866626749394 80-81 22.37491571265306 27.594567660320934 27.3623171610867 22.668199465939306 82-83 22.388008216355807 27.558517207034523 27.44297697292575 22.610497603683925 84-85 22.447077486315198 27.55311374493752 27.430894909306367 22.56891385944091 86-87 22.348432493185644 27.549320487857322 27.489306743591612 22.612940275365425 88-89 22.33187193681368 27.50622340648487 27.519403364051765 22.642501292649683 90-91 22.387160858204464 27.48142921710903 27.50338213314063 22.628027791545875 92-93 22.390162291471754 27.390604992113193 27.64271341752448 22.57651929889057 94-95 22.23004229149211 27.39746132800862 27.692670052617284 22.679826327881987 96-97 22.1733457485515 27.472900048339998 27.735175494202107 22.61857870890639 98-99 22.366308180320132 28.033240896927975 27.73803408922208 21.86241683352981 100-101 21.04618682261293 31.548779747832256 25.455269903966453 21.949763525588363 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1787.0 1 1612.0 2 2137.0 3 3031.5 4 4045.5 5 6062.5 6 7753.0 7 9715.5 8 11644.0 9 12162.5 10 11328.0 11 10319.0 12 11291.0 13 15058.5 14 24364.5 15 37053.5 16 46775.5 17 51565.0 18 51833.0 19 48918.0 20 44444.5 21 40008.5 22 38025.0 23 40602.5 24 47498.0 25 58573.5 26 72990.0 27 88982.5 28 106978.0 29 126367.0 30 145226.5 31 163800.5 32 183712.0 33 203447.5 34 221359.0 35 239063.5 36 258682.0 37 276096.0 38 290774.5 39 304575.0 40 316124.0 41 327698.5 42 335824.5 43 341414.5 44 348373.5 45 354524.5 46 359187.5 47 360968.5 48 358676.0 49 354643.5 50 350951.0 51 343183.5 52 330697.0 53 316033.5 54 299976.0 55 282001.5 56 261098.5 57 237892.0 58 211847.0 59 183026.5 60 153050.0 61 125269.0 62 100272.5 63 77506.0 64 57797.5 65 43237.0 66 32812.5 67 24785.0 68 18708.5 69 13284.0 70 9182.0 71 6549.0 72 4490.0 73 2977.5 74 1978.0 75 1300.5 76 835.5 77 531.0 78 337.5 79 227.0 80 151.0 81 100.5 82 71.0 83 45.5 84 32.5 85 28.5 86 22.0 87 16.5 88 14.5 89 9.5 90 5.0 91 3.0 92 1.5 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.1520520985608219E-5 2 0.015218608221988459 3 1.1520520985608219E-5 4 1.152052098560822E-4 5 1.1520520985608219E-5 6 2.3041041971216438E-5 7 2.3041041971216438E-5 8 1.1520520985608219E-5 9 1.1520520985608219E-5 10-11 2.0736937774094795E-4 12-13 5.645055282948027E-4 14-15 2.304104197121644E-4 16-17 0.0018432833576973152 18-19 0.0 20-21 0.0 22-23 2.361964490801934E-4 24-25 0.008844784178911026 26-27 0.019085030989398327 28-29 0.34593835136262135 30-31 0.32239437808494137 32-33 0.3163712838076713 34-35 0.18619582105560686 36-37 0.045188326372337474 38-39 0.0364986746360131 40-41 0.015655054221268488 42-43 0.014597959413391556 44-45 0.018044544830555845 46-47 0.012398916409850726 48-49 0.007478157293920467 50-51 0.0040372812676322395 52-53 0.0015307689220306585 54-55 6.897534244376377E-5 56-57 2.2133730863571543E-4 58-59 0.001237476214463303 60-61 0.0011264583371016048 62-63 3.1183882454434013E-4 64-65 9.838109965277374E-5 66-67 0.0031621077403690785 68-69 0.005254018385847605 70-71 0.006673660120449741 72-73 0.01066442373584284 74-75 0.00793499123411963 76-77 0.005720520972116066 78-79 0.003470741402070446 80-81 0.004488908702552647 82-83 0.0016557345822607065 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0027219337109183374 92-93 0.015803206790792154 94-95 0.0013262604767586834 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 150.0 20-21 561.0 22-23 1123.0 24-25 3153.0 26-27 3762.0 28-29 6412.0 30-31 18414.0 32-33 23828.0 34-35 34147.0 36-37 48087.0 38-39 56112.0 40-41 59249.0 42-43 69986.0 44-45 83417.0 46-47 82415.0 48-49 73173.0 50-51 65686.0 52-53 60037.0 54-55 66467.0 56-57 67936.0 58-59 70186.0 60-61 72272.0 62-63 71170.0 64-65 79373.0 66-67 81830.0 68-69 81159.0 70-71 80597.0 72-73 78413.0 74-75 80255.0 76-77 80528.0 78-79 85601.0 80-81 87847.0 82-83 86615.0 84-85 89885.0 86-87 96290.0 88-89 103933.0 90-91 112606.0 92-93 123670.0 94-95 148555.0 96-97 225555.0 98-99 836575.0 100-101 5083133.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.5438810836915 #Duplication Level Percentage of deduplicated Percentage of total 1 90.87129267491176 78.64354347178892 2 6.472802385819236 11.203628799131495 3 1.4794377439209923 3.841088525418696 4 0.5534871711328211 1.9160371167947072 5 0.22917642125880575 0.9916908474304037 6 0.12903775898869307 0.6700457081534098 7 0.07124107906435422 0.43158356323735353 8 0.04791072638142402 0.3317104165269794 9 0.03144490335902595 0.2449227579292542 >10 0.11100981792729618 1.508578197105074 >50 0.0026656679071995694 0.15299923291956125 >100 4.93649328375317E-4 0.06417136356418426 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1520520985608219E-5 0.0 2 0.0 3.456156295682466E-5 0.0 1.1520520985608219E-5 0.0 3 0.0 3.456156295682466E-5 0.0 1.1520520985608219E-5 0.0 4 0.0 4.6082083942432876E-5 0.0 1.1520520985608219E-5 0.0 5 0.0 4.6082083942432876E-5 0.0 2.3041041971216438E-5 0.0 6 0.0 4.6082083942432876E-5 0.0 3.456156295682466E-5 0.0 7 0.0 4.6082083942432876E-5 0.0 4.6082083942432876E-5 0.0 8 0.0 8.064364689925754E-5 0.0 4.6082083942432876E-5 0.0 9 0.0 1.0368468887047397E-4 0.0 5.76026049280411E-5 1.1520520985608219E-5 10-11 0.0 1.0368468887047397E-4 0.0 6.912312591364932E-5 1.7280781478412327E-5 12-13 1.7280781478412327E-5 1.0368468887047397E-4 0.0 8.640390739206164E-5 2.3041041971216438E-5 14-15 2.3041041971216438E-5 1.3824625182729864E-4 0.0 1.0944494936327809E-4 2.3041041971216438E-5 16-17 2.880130246402055E-5 1.4400651232010275E-4 0.0 1.4976677281290686E-4 2.880130246402055E-5 18-19 4.0321823449628765E-5 1.7280781478412328E-4 0.0 1.7280781478412328E-4 5.184234443523699E-5 20-21 4.6082083942432876E-5 2.0736937774094795E-4 0.0 2.4769120119057676E-4 6.912312591364932E-5 22-23 4.6082083942432876E-5 2.304104197121644E-4 0.0 4.493003184387205E-4 8.640390739206164E-5 24-25 4.6082083942432876E-5 2.4769120119057676E-4 0.0 0.0011808534010248426 1.0368468887047397E-4 26-27 5.184234443523699E-5 2.6497198266898906E-4 0.0 0.0034907178586392907 1.0368468887047397E-4 28-29 6.336286542084521E-5 2.6497198266898906E-4 0.0 0.019008859626253562 1.0368468887047397E-4 30-31 6.912312591364932E-5 2.880130246402055E-4 0.0 0.027119306400121748 1.0368468887047397E-4 32-33 6.912312591364932E-5 2.880130246402055E-4 0.0 0.029584697891041907 1.0368468887047397E-4 34-35 8.064364689925754E-5 3.340951085826384E-4 0.0 0.03272980012011295 1.0944494936327809E-4 36-37 9.216416788486575E-5 3.8017719252507123E-4 0.0 0.03775850753033094 1.3824625182729864E-4 38-39 9.216416788486575E-5 3.8017719252507123E-4 0.0 0.047470306721198674 1.3824625182729864E-4 40-41 1.0368468887047397E-4 4.262592764675041E-4 0.0 0.06528679242544178 1.612872937985151E-4 42-43 1.0368468887047397E-4 4.4930031843872057E-4 0.0 0.0738811010807055 1.612872937985151E-4 44-45 1.0368468887047397E-4 4.8386188139554523E-4 0.0 0.08674376276113709 1.612872937985151E-4 46-47 1.0368468887047397E-4 4.953824023811534E-4 0.0 0.10322386803104965 1.612872937985151E-4 48-49 1.0368468887047397E-4 4.953824023811534E-4 0.0 0.11726738311250606 1.843283357697315E-4 50-51 1.0368468887047397E-4 5.990670912516275E-4 0.0 0.1337186870799546 1.9008859626253562E-4 52-53 1.0368468887047397E-4 6.221081332228439E-4 0.0 0.1515006112212409 2.0736937774094795E-4 54-55 1.0368468887047397E-4 6.221081332228439E-4 0.0 0.21355013724972677 2.1888989872655617E-4 56-57 1.0368468887047397E-4 6.221081332228439E-4 0.0 0.2556461209311392 2.1888989872655617E-4 58-59 1.0368468887047397E-4 6.336286542084521E-4 0.0 0.3060656810246536 2.1888989872655617E-4 60-61 1.0368468887047397E-4 6.451491751940602E-4 0.0 0.328311807047863 2.1888989872655617E-4 62-63 1.0368468887047397E-4 6.566696961796685E-4 0.0 0.33933118537059725 2.1888989872655617E-4 64-65 1.0368468887047397E-4 7.142723011077096E-4 0.0 0.3501431943155906 2.1888989872655617E-4 66-67 1.0368468887047397E-4 7.142723011077096E-4 0.0 0.356836617008229 2.1888989872655617E-4 68-69 1.2096547034888631E-4 7.31553082586122E-4 0.0 0.36327658823918396 2.1888989872655617E-4 70-71 1.2672573084169042E-4 7.37313343078926E-4 0.0 0.36866819206044865 2.2465015921936028E-4 72-73 1.2672573084169042E-4 7.37313343078926E-4 0.0 0.373155434984343 2.5345146168338084E-4 74-75 1.2672573084169042E-4 7.661146455429466E-4 0.0 0.3769572069095938 2.5345146168338084E-4 76-77 1.2672573084169042E-4 8.237172504709878E-4 0.0 0.3803269592978842 2.5345146168338084E-4 78-79 1.2672573084169042E-4 8.525185529350082E-4 0.0 0.38354118465286885 2.5345146168338084E-4 80-81 1.2672573084169042E-4 8.525185529350082E-4 0.0 0.38474507909586486 2.5345146168338084E-4 82-83 1.3248599133449453E-4 8.582788134278124E-4 0.0 0.38526926280071006 2.6497198266898906E-4 84-85 1.3824625182729864E-4 8.813198553990287E-4 0.0 0.38567248103520635 2.6497198266898906E-4 86-87 1.3824625182729864E-4 8.986006368774411E-4 0.0 0.38575888494259847 2.6497198266898906E-4 88-89 1.3824625182729864E-4 9.677237627910905E-4 0.0 0.3858337683290049 2.764925036545973E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10045 0.0 52.151283 1 GTATCAA 18895 0.0 38.635094 1 TCAACGC 24015 0.0 29.864756 4 ATCAACG 24275 0.0 29.421907 3 CAACGCA 24765 0.0 28.960146 5 TATCAAC 25295 0.0 28.507704 2 AACGCAG 25580 0.0 28.104258 6 ACGCAGA 29550 0.0 24.27108 7 CGCAGAG 29930 0.0 23.89207 8 GTACATG 25060 0.0 21.395084 1 TACATGG 25480 0.0 20.44311 2 GCAGAGT 35190 0.0 20.164137 9 ACATGGG 25830 0.0 19.47369 3 GAGTACT 20765 0.0 18.750807 12-13 AGAGTAC 31790 0.0 18.73912 10-11 GTGGTAT 4940 0.0 18.28945 1 CAGAGTA 34150 0.0 17.891245 10-11 TGGTATC 4780 0.0 17.393066 2 CATGGGG 19880 0.0 17.366247 4 AGTACTT 22695 0.0 17.193604 12-13 >>END_MODULE