##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139072_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11071280 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.714661990302837 30.0 18.0 32.0 18.0 33.0 2 28.77707184715769 31.0 27.0 33.0 18.0 33.0 3 30.921588380024712 32.0 31.0 33.0 27.0 33.0 4 31.65766505769884 33.0 31.0 33.0 29.0 33.0 5 32.50787018303213 33.0 33.0 33.0 32.0 34.0 6 36.402347786344485 38.0 37.0 38.0 34.0 38.0 7 36.60050771003895 38.0 37.0 38.0 34.0 38.0 8 36.83399372068993 38.0 38.0 38.0 35.0 38.0 9 37.054046596238194 38.0 38.0 38.0 36.0 38.0 10-11 37.15184879255154 38.0 38.0 38.0 36.0 38.0 12-13 37.207290439768485 38.0 38.0 38.0 36.0 38.0 14-15 37.19984035269634 38.0 38.0 38.0 36.0 38.0 16-17 37.156328807509155 38.0 38.0 38.0 36.0 38.0 18-19 37.18633848118736 38.0 38.0 38.0 36.0 38.0 20-21 37.21116243928765 38.0 38.0 38.0 36.0 38.0 22-23 37.21954012733423 38.0 38.0 38.0 36.0 38.0 24-25 37.217689021099815 38.0 38.0 38.0 36.0 38.0 26-27 37.18895489240424 38.0 38.0 38.0 36.0 38.0 28-29 37.16522840783574 38.0 38.0 38.0 36.0 38.0 30-31 37.16678645196954 38.0 38.0 38.0 36.0 38.0 32-33 37.1511813076444 38.0 38.0 38.0 36.0 38.0 34-35 37.11997017894487 38.0 38.0 38.0 36.0 38.0 36-37 37.09917566189759 38.0 38.0 38.0 36.0 38.0 38-39 37.045272510337114 38.0 38.0 38.0 36.0 38.0 40-41 37.07329709265836 38.0 38.0 38.0 36.0 38.0 42-43 37.05784805259849 38.0 38.0 38.0 36.0 38.0 44-45 37.00829415038187 38.0 38.0 38.0 36.0 38.0 46-47 36.98191355333182 38.0 38.0 38.0 36.0 38.0 48-49 36.94931910795262 38.0 38.0 38.0 36.0 38.0 50-51 36.91150998769445 38.0 38.0 38.0 36.0 38.0 52-53 36.88693104581865 38.0 38.0 38.0 36.0 38.0 54-55 36.85597908945408 38.0 38.0 38.0 35.0 38.0 56-57 36.856424920827536 38.0 38.0 38.0 35.0 38.0 58-59 36.8356638848445 38.0 38.0 38.0 35.0 38.0 60-61 36.84133976002872 38.0 38.0 38.0 35.0 38.0 62-63 36.828304941536274 38.0 38.0 38.0 35.0 38.0 64-65 36.81615332936555 38.0 38.0 38.0 35.0 38.0 66-67 36.803293517750674 38.0 38.0 38.0 35.0 38.0 68-69 36.80723866440829 38.0 38.0 38.0 35.0 38.0 70-71 36.78402311306277 38.0 38.0 38.0 35.0 38.0 72-73 36.76558936462537 38.0 38.0 38.0 35.0 38.0 74-75 36.77949544248188 38.0 38.0 38.0 35.0 38.0 76-77 36.76099649204927 38.0 38.0 38.0 35.0 38.0 78-79 36.737893700570595 38.0 38.0 38.0 35.0 38.0 80-81 36.730211724233484 38.0 38.0 38.0 35.0 38.0 82-83 36.67329220610864 38.0 38.0 38.0 34.5 38.0 84-85 36.67125138060969 38.0 38.0 38.0 34.0 38.0 86-87 36.66065680327765 38.0 38.0 38.0 34.0 38.0 88-89 36.63598984672684 38.0 38.0 38.0 34.0 38.0 90-91 36.616901223346886 38.0 38.0 38.0 34.0 38.0 92-93 36.61832405884279 38.0 38.0 38.0 34.0 38.0 94-95 36.561019295687714 38.0 38.0 38.0 34.0 38.0 96-97 36.5264331225907 38.0 38.0 38.0 34.0 38.0 98-99 36.555667570795606 38.0 38.0 38.0 34.0 38.0 100 34.900205561237115 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 12.0 18 43.0 19 85.0 20 198.0 21 420.0 22 1237.0 23 3461.0 24 7863.0 25 15522.0 26 27084.0 27 43105.0 28 64402.0 29 92098.0 30 123913.0 31 161654.0 32 209846.0 33 280580.0 34 408122.0 35 704673.0 36 1949962.0 37 6977000.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.398389346128 18.355619223793454 14.515972859506759 27.730018570571787 2 13.2067049158146 19.381755196179686 44.65489866155682 22.756641226448888 3 16.8938370269743 26.776099963147892 30.854264366902473 25.475798642975338 4 11.71929532989862 18.869308697819946 38.94351872592871 30.467877246352725 5 13.217589176047303 37.19914470916155 35.99350149500662 13.589764619784525 6 29.13669344167381 38.597261199482986 18.829827111072174 13.43621824777103 7 26.023061470760382 33.0156404679495 22.865928781495906 18.09536927979421 8 23.968240347999508 36.863379844065 21.208396861067556 17.95998294686793 9 25.120853234675668 17.077889819424673 21.325926180170676 36.475330765728984 10-11 23.746400596859623 26.96643929157243 29.005101487813512 20.282058623754434 12-13 24.84468372220737 24.22331925486484 29.13325740113158 21.798739621796216 14-15 21.947787428373232 25.62570452558331 26.813923051354493 25.61258499468896 16-17 21.48828319760678 29.011225440960757 27.251424406211388 22.249066955221075 18-19 21.42909401622938 27.87158305092094 29.397305460615215 21.302017472234468 20-21 22.276092173980434 26.918130228530895 29.219896438540427 21.585881158948244 22-23 21.93584407981527 27.153009286682067 29.13405130155772 21.777095331944945 24-25 21.839771682357497 27.346914919554855 29.278654499192896 21.534658898894754 26-27 21.904947758738178 27.457132667440476 29.218155236017935 21.41976433780341 28-29 21.59802263098637 27.32041898576467 29.407778902243702 21.67377948100525 30-31 22.17701154364116 27.28786057624355 29.08430397237396 21.450823907741327 32-33 21.886329021528667 27.077526170885026 29.247696221320428 21.788448586265886 34-35 21.567711220469498 27.48697355949204 29.555664450753827 21.389650769284632 36-37 21.967139170560664 27.326342061715884 29.133824365600645 21.572694402122806 38-39 21.599994907721225 27.10399266711856 29.495925764833252 21.80008666032696 40-41 21.850343491601933 27.03499766518854 29.380219842179923 21.7344390010296 42-43 22.051453900733875 27.016433424711252 29.178514162186413 21.753598512368463 44-45 21.86537670743734 27.474167734387706 28.915660006618072 21.744795551556884 46-47 22.10891435704665 27.081834613478513 28.500185015126405 22.30906601434843 48-49 22.072324110506727 27.199333509392236 28.481648709291917 22.24669367080912 50-51 21.720237065080873 27.345130095435476 28.65847677139938 22.27615606808428 52-53 21.899879692372398 27.347299511116752 28.76750720946436 21.98531358704649 54-55 21.94043086225145 27.27210826965891 28.490551348637922 22.296909519451717 56-57 22.310090949564582 27.55829843698756 28.048015192547872 22.08359542089999 58-59 21.81313898706972 27.975421667971084 28.611845515236073 21.599593829723123 60-61 22.183643285186243 28.233790181143263 27.939371919307117 21.643194614363377 62-63 21.806052322262417 28.607102567926418 27.80739669925082 21.779448410560345 64-65 21.742025220097144 28.60386373512987 27.870134171531134 21.783976873241848 66-67 21.87264640829059 28.435705185101995 27.763052595345915 21.9285958112615 68-69 21.90034309521461 28.24892727632482 27.95861157746911 21.892118050991456 70-71 21.90519008762583 27.821976382880216 28.072421618274525 22.20041191121943 72-73 22.11202208396251 27.534650903332707 28.217447947985118 22.13587906471966 74-75 21.962863103092708 27.670699133620317 28.142673020736343 22.22376474255063 76-77 22.038283907231424 27.613793571028467 28.02558179453528 22.322340727204832 78-79 22.076537649551746 27.640925480540773 28.024686852480073 22.257850017427405 80-81 22.071578088189973 27.608197743104775 28.043099987275355 22.277124181429897 82-83 22.161095159626647 27.534453988767766 28.15841606297881 22.146034788626782 84-85 22.39055389282016 27.562744342176547 27.97551633226721 22.07118543273608 86-87 22.083138073405177 27.62976428351161 28.049225180600047 22.237872462483168 88-89 22.127178879265553 27.595266584164683 28.01122687389524 22.266327662674517 90-91 22.261895872220904 27.59653543296215 28.011651342906323 22.12991735191062 92-93 22.30206936472567 27.648901421838467 27.92886407255847 22.12016514087739 94-95 22.069951029871337 27.6976634504767 28.010202477450676 22.22218304220129 96-97 22.158461172308307 27.898477859142563 28.016343474909966 21.926717493639167 98-99 23.29886073814091 29.735372098945195 28.210550552671904 18.755216610241987 100 22.186782881222065 30.543685623737794 22.148406712494843 25.121124782545294 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 995.0 1 1148.5 2 2394.5 3 3745.0 4 5333.0 5 8499.0 6 10849.5 7 12442.0 8 14131.5 9 14756.0 10 14274.0 11 14183.5 12 16183.0 13 21197.0 14 30914.0 15 42524.5 16 51784.5 17 57202.0 18 56458.5 19 50350.0 20 43269.5 21 38159.5 22 37136.5 23 41518.5 24 50743.0 25 64924.0 26 85077.0 27 107584.5 28 129525.0 29 154398.0 30 178238.5 31 200784.5 32 227442.0 33 252761.0 34 278969.0 35 306159.0 36 333287.0 37 361105.0 38 378980.0 39 390473.5 40 408047.5 41 424285.5 42 438419.0 43 472518.0 44 502037.5 45 504875.5 46 493814.5 47 479758.5 48 469171.0 49 456048.5 50 444294.0 51 431141.5 52 413128.5 53 396586.0 54 376136.0 55 344380.0 56 308758.5 57 272028.0 58 235304.5 59 199850.0 60 163193.5 61 129671.0 62 100394.0 63 74324.0 64 53829.5 65 39099.5 66 28343.0 67 20918.0 68 15686.5 69 11522.5 70 8184.5 71 5803.0 72 4202.5 73 2778.5 74 1732.0 75 1062.0 76 620.0 77 365.0 78 230.5 79 145.5 80 99.5 81 65.5 82 44.5 83 30.0 84 20.5 85 15.0 86 13.5 87 11.0 88 7.5 89 3.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0032335917798122712 3 0.0 4 0.0 5 0.0038477935703911384 6 9.032379273218634E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 1.3549352160308708E-5 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 1.3592615186539613E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 4.606513462627725E-6 42-43 0.0 44-45 0.0 46-47 1.4128682723569215E-5 48-49 4.037305654199071E-4 50-51 0.0013835546765488536 52-53 0.003732198822042829 54-55 0.005371174634613219 56-57 0.0062730701697212895 58-59 0.007791391892711547 60-61 0.007361530164379341 62-63 0.005296448538338045 64-65 0.003207905248481562 66-67 0.0011220356010675863 68-69 4.125397011448957E-4 70-71 2.4000444112565837E-4 72-73 5.180527370285541E-4 74-75 2.6666690844466366E-5 76-77 3.067093972046505E-4 78-79 2.498157337424808E-4 80-81 1.0416546739319339E-4 82-83 2.7674323469337317E-5 84-85 1.1730589254311018E-4 86-87 1.466033167421608E-4 88-89 2.8468583779056463E-5 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 105.0 20-21 366.0 22-23 770.0 24-25 1023.0 26-27 2610.0 28-29 7245.0 30-31 18473.0 32-33 23080.0 34-35 31773.0 36-37 51183.0 38-39 64687.0 40-41 64881.0 42-43 74806.0 44-45 89933.0 46-47 91649.0 48-49 85214.0 50-51 76283.0 52-53 72609.0 54-55 76795.0 56-57 78800.0 58-59 79297.0 60-61 81265.0 62-63 80352.0 64-65 88955.0 66-67 104352.0 68-69 107850.0 70-71 135876.0 72-73 86087.0 74-75 81804.0 76-77 84619.0 78-79 86734.0 80-81 86946.0 82-83 83364.0 84-85 82994.0 86-87 85028.0 88-89 89409.0 90-91 90130.0 92-93 90903.0 94-95 108759.0 96-97 335744.0 98-99 771486.0 100-101 7317041.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.90197917202173 #Duplication Level Percentage of deduplicated Percentage of total 1 86.39802082528149 68.16974839660259 2 8.4293532857982 13.30185314779325 3 2.6129655796187974 6.18504467220876 4 1.1067552126328177 3.4930070694272417 5 0.5410637738918269 2.1345501309174195 6 0.3054000525234602 1.4458001150004238 7 0.1857674604439301 1.026019420635044 8 0.11383119454642923 0.7185205232982969 9 0.07607673966346251 0.5402344795561653 >10 0.22709438479230193 2.5975836691871863 >50 0.002538560490786505 0.1325639266074525 >100 9.9757521609323E-4 0.13174111752094353 >500 9.023701377478754E-5 0.05510772621804946 >1k 4.511808675090429E-5 0.06822560502720662 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.032379273218633E-6 0.0 0.0 0.0 3 0.0 9.032379273218633E-6 0.0 0.0 0.0 4 0.0 9.032379273218633E-6 0.0 0.0 0.0 5 0.0 9.032379273218633E-6 0.0 0.0 0.0 6 2.348418611036845E-4 9.032379273218633E-6 0.0 0.0 0.0 7 2.348418611036845E-4 9.032379273218633E-6 0.0 3.6129517092874534E-5 0.0 8 2.4387424037690313E-4 9.032379273218633E-6 0.0 3.6129517092874534E-5 1.8064758546437267E-5 9 2.4387424037690313E-4 1.8064758546437267E-5 0.0 3.6129517092874534E-5 3.6129517092874534E-5 10-11 2.619389989233404E-4 1.8064758546437267E-5 0.0 3.6129517092874534E-5 3.6129517092874534E-5 12-13 2.7097137819655904E-4 1.8064758546437267E-5 0.0 3.6129517092874534E-5 3.6129517092874534E-5 14-15 2.800037574697777E-4 6.322665491253044E-5 0.0 3.6129517092874534E-5 5.41942756393118E-5 16-17 4.787161014805876E-4 6.322665491253044E-5 0.0 4.9678086002702485E-5 7.225903418574907E-5 18-19 4.787161014805876E-4 6.322665491253044E-5 0.0 7.225903418574907E-5 8.129141345896771E-5 20-21 4.787161014805876E-4 6.322665491253044E-5 0.0 9.935617200540497E-5 8.129141345896771E-5 22-23 4.922646703904156E-4 7.677522382235839E-5 0.0 1.0838855127862361E-4 9.935617200540497E-5 24-25 4.967808600270249E-4 9.483998236879565E-5 0.0 1.4000187873488884E-4 1.4000187873488884E-4 26-27 4.967808600270249E-4 1.0387236164201429E-4 0.0 1.7161520619115404E-4 1.4451806837149813E-4 28-29 5.058132393002435E-4 1.0838855127862361E-4 0.0 3.116170849260429E-4 1.4451806837149813E-4 30-31 5.058132393002435E-4 1.1742093055184224E-4 0.0 7.677522382235839E-4 1.4903425800810746E-4 32-33 5.058132393002435E-4 1.2645330982506087E-4 0.0 0.0017703463375508524 1.6258282691793542E-4 34-35 5.193618082100714E-4 1.4000187873488884E-4 0.0 0.0030981060907139917 1.7161520619115404E-4 36-37 5.238779978466808E-4 1.5355044764471678E-4 0.0 0.005189101892464105 1.7161520619115404E-4 38-39 5.238779978466808E-4 1.6258282691793542E-4 0.0 0.00859882506810414 1.8064758546437268E-4 40-41 5.329103771198994E-4 1.8064758546437268E-4 0.0 0.012595652896503384 1.8064758546437268E-4 42-43 5.329103771198994E-4 1.9871234401080994E-4 0.0 0.01647054360471418 1.8064758546437268E-4 44-45 5.329103771198994E-4 2.4839043001351245E-4 0.0 0.02063898663930458 1.8064758546437268E-4 46-47 5.329103771198994E-4 2.800037574697777E-4 0.0 0.025471309550476547 1.896799647375913E-4 48-49 5.419427563931181E-4 2.800037574697777E-4 0.0 0.03021330866891633 2.0774472328402858E-4 50-51 5.464589460297273E-4 3.025847056528242E-4 0.0 0.03500046968372221 2.0774472328402858E-4 52-53 5.509751356663367E-4 3.116170849260429E-4 0.0 0.03948052980323865 2.1677710255724723E-4 54-55 5.509751356663367E-4 3.161332745626522E-4 0.0 0.04419543178385878 2.3032567146707517E-4 56-57 5.55491325302946E-4 3.161332745626522E-4 0.0 0.048978076609028046 2.348418611036845E-4 58-59 5.600075149395554E-4 3.206494641992615E-4 0.0 0.05368846240001156 2.348418611036845E-4 60-61 6.27750359488695E-4 3.2516565383587084E-4 0.0 0.058457558656271 2.348418611036845E-4 62-63 7.045255833110534E-4 3.341980331090895E-4 0.0 0.06271180929395698 2.5290661965012175E-4 64-65 7.090417729476628E-4 3.522627916555267E-4 0.0 0.0670789646725582 2.5290661965012175E-4 66-67 7.451712900405374E-4 3.6129517092874536E-4 0.0 0.0719293523422766 2.5742280928673104E-4 68-69 7.587198589503653E-4 3.6129517092874536E-4 0.0 0.07649522006488861 2.619389989233404E-4 70-71 7.677522382235839E-4 3.6129517092874536E-4 0.0 0.08072688975439155 2.619389989233404E-4 72-73 8.400112724093329E-4 3.6129517092874536E-4 0.0 0.08387467393110823 3.432304123823081E-4 74-75 8.400112724093329E-4 3.6581136056535466E-4 0.0 0.08641728869651928 3.432304123823081E-4 76-77 8.490436516825516E-4 3.929084983850106E-4 0.0 0.08878828825573917 3.4774660201891737E-4 78-79 8.490436516825516E-4 4.064570672948385E-4 0.0 0.09034185749073279 3.522627916555267E-4 80-81 8.490436516825516E-4 4.064570672948385E-4 0.0 0.09081605740257676 3.70327550201964E-4 82-83 8.490436516825516E-4 4.064570672948385E-4 0.0 0.09126316017660108 4.0194087765822923E-4 84-85 8.490436516825516E-4 4.064570672948385E-4 0.0 0.09150703441697798 4.064570672948385E-4 86-87 8.490436516825516E-4 4.1548944656805717E-4 0.0 0.09161090677862 4.064570672948385E-4 88 8.490436516825516E-4 4.516189636609317E-4 0.0 0.0916154229682566 4.1548944656805717E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 11390 0.0 48.893078 1 GGTATCA 14450 0.0 47.663074 1 GTATCAA 28770 0.0 41.004658 1 TATACAC 16370 0.0 36.633083 3 ATCAACG 34645 0.0 34.06279 3 TCAACGC 35175 0.0 33.561718 4 CAACGCA 35435 0.0 33.279224 5 TATCAAC 36710 0.0 32.520554 2 TTATACA 17720 0.0 32.34526 2 AACGCAG 36895 0.0 32.054108 6 ACGCAGA 41145 0.0 28.711794 7 CGCAGAG 41885 0.0 28.163654 8 ACACATC 20970 0.0 26.820524 6 ACATCTC 21235 0.0 26.626795 8 TACACAT 23005 0.0 26.17917 5 GCAGAGT 48385 0.0 24.424406 9 CACATCT 22890 0.0 24.421127 7 ATACACA 26960 0.0 23.720003 4 CATCTCC 24230 0.0 22.964565 9 TATGCCG 14630 0.0 22.35663 42-43 >>END_MODULE