##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139071_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10509270 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.564560335779746 34.0 31.0 34.0 31.0 34.0 2 32.70315559501278 34.0 31.0 34.0 31.0 34.0 3 32.69001985865812 34.0 31.0 34.0 31.0 34.0 4 36.21668403228769 37.0 35.0 37.0 35.0 37.0 5 36.17402521773634 37.0 35.0 37.0 35.0 37.0 6 36.216285622122186 37.0 37.0 37.0 35.0 37.0 7 36.174846302359725 37.0 37.0 37.0 35.0 37.0 8 36.15141004084965 37.0 37.0 37.0 35.0 37.0 9 37.87872535390184 39.0 38.0 39.0 35.0 39.0 10-11 37.80979582787387 39.0 38.0 39.0 35.0 39.0 12-13 37.78150751669716 39.0 38.0 39.0 35.0 39.0 14-15 39.1243679627605 40.0 39.0 41.0 36.0 41.0 16-17 39.09623646552044 40.0 38.0 41.0 36.0 41.0 18-19 39.057005196364734 40.0 38.5 41.0 36.0 41.0 20-21 39.0414577390466 40.0 39.0 41.0 35.5 41.0 22-23 38.926891188387714 40.0 38.0 41.0 35.0 41.0 24-25 38.78949060499268 40.0 38.0 41.0 35.0 41.0 26-27 38.73972186077315 40.0 38.0 41.0 34.5 41.0 28-29 38.683747194955146 40.0 38.0 41.0 35.0 41.0 30-31 38.610291574177126 40.0 38.0 41.0 34.5 41.0 32-33 38.49596973985983 40.0 38.0 41.0 34.0 41.0 34-35 38.30463523786618 40.0 38.0 41.0 34.0 41.0 36-37 38.438669199344375 40.0 38.0 41.0 34.0 41.0 38-39 38.417230763529474 40.0 38.0 41.0 34.0 41.0 40-41 38.38932978759735 40.0 38.0 41.0 34.0 41.0 42-43 38.424927450903674 40.0 38.0 41.0 34.0 41.0 44-45 38.36480134093499 40.0 38.0 41.0 34.0 41.0 46-47 38.30889609513916 40.0 38.0 41.0 33.5 41.0 48-49 38.155189541543606 40.0 38.0 41.0 33.0 41.0 50-51 38.1561586493588 40.0 37.5 41.0 33.0 41.0 52-53 38.068395792366324 40.0 37.0 41.0 33.0 41.0 54-55 37.919513558892305 40.0 37.0 41.0 33.0 41.0 56-57 37.7560054991423 40.0 36.5 41.0 33.0 41.0 58-59 37.596367871000474 39.0 36.0 41.0 33.0 41.0 60-61 37.413597901959506 39.0 36.0 41.0 32.0 41.0 62-63 37.20575777693924 39.0 35.0 40.5 32.0 41.0 64-65 36.917701278584374 38.5 35.0 40.0 31.5 41.0 66-67 36.56435850496406 38.0 35.0 40.0 31.0 41.0 68-69 36.23450254783846 37.0 35.0 40.0 31.0 41.0 70-71 35.93436024882891 37.0 34.5 39.5 31.0 41.0 72-73 35.61126004364637 36.0 34.0 39.0 30.0 40.5 74-75 35.246697542023284 36.0 34.0 39.0 30.0 40.0 76-77 34.288804482623554 35.0 33.0 37.0 29.0 39.0 78-79 34.57022832116227 35.0 34.0 37.0 30.0 39.0 80-81 34.37298910173749 35.0 34.0 37.0 29.5 39.0 82-83 34.093496809996694 35.0 34.0 36.0 29.0 38.5 84-85 33.842262784905216 35.0 33.0 36.0 29.0 37.0 86-87 33.5949350045466 35.0 33.0 35.5 29.0 37.0 88-89 33.35259521082142 35.0 33.0 35.0 29.0 36.5 90-91 33.16364992451784 35.0 33.0 35.0 29.0 36.0 92-93 33.07041234636438 35.0 33.0 35.0 29.0 36.0 94-95 32.98973363728747 34.0 32.5 35.0 29.0 36.0 96-97 32.96939269872367 34.0 32.0 35.0 29.0 35.0 98-99 33.09199641468996 34.0 32.5 35.0 29.0 35.0 100-101 31.239774779331977 32.5 29.0 34.5 24.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 3.0 19 5.0 20 50.0 21 333.0 22 1403.0 23 4633.0 24 12055.0 25 25246.0 26 45071.0 27 71381.0 28 103386.0 29 139498.0 30 181556.0 31 230002.0 32 291423.0 33 381240.0 34 528288.0 35 761957.0 36 1257114.0 37 2310740.0 38 2791314.0 39 1299891.0 40 72678.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.277039059519744 21.6828401670944 15.872074451610288 24.16804632177557 2 13.400185941728044 21.854757792769476 41.738341026341615 23.00671523916086 3 16.759719443854753 26.87408610437129 31.498860672421653 24.8673337793523 4 11.781294612437545 19.156703787259637 39.30808265205327 29.75391894824955 5 12.675258383813375 38.20122027516852 36.007480634476096 13.116040706542007 6 29.048195454888443 39.069548985757244 18.79258205304289 13.089673506311428 7 25.660937977703302 33.26890766617545 23.369265740557214 17.700888615564033 8 23.98131364024333 37.32255427827052 21.199388730140154 17.496743351346 9 25.0105192844032 17.13813614075954 21.6267923461858 36.22455222865147 10-11 23.57471608126055 27.392664391022127 29.205352005379638 19.82726752233769 12-13 24.523586703275843 24.81868038543353 29.418857087667433 21.238875823623196 14-15 21.65607868351292 26.288592106699237 27.12297681630862 24.932352393479224 16-17 21.08571828498058 29.53350155943858 27.75160277019742 21.629177385383418 18-19 21.095101857227178 28.492348040572562 29.789065252778286 20.62348484942197 20-21 21.841551587415438 27.548095060083767 29.74426045371692 20.86609289878388 22-23 21.556476477040416 27.58526443570915 29.58173876582902 21.276520321421412 24-25 21.3956735173814 27.76797008451 29.651096375825432 21.185260022283163 26-27 21.4131268858135 27.871572344522683 29.60776126811812 21.1075395015457 28-29 21.254089705108115 27.8564091443796 29.659213829113227 21.23028732139906 30-31 21.55592760115181 27.811905880119408 29.514325477889123 21.11784104083966 32-33 21.389276561507867 27.803219775429298 29.48650776249106 21.320995900571777 34-35 21.38028984803195 28.008056715946907 29.57678719562239 21.03486624039876 36-37 21.48018608307712 27.90287040095602 29.398972142592594 21.21797137337427 38-39 21.365114376915074 27.93328637766532 29.405442842117345 21.29615640330226 40-41 21.534678989408516 27.81078950555857 29.302889213818133 21.35164229121478 42-43 21.536861075058265 27.939171823426484 29.073214786484964 21.45075231503029 44-45 21.546418631455484 28.099759546914388 28.886925092344466 21.466896729285658 46-47 21.71488842689728 28.027077196190735 28.51083802253932 21.747196354372665 48-49 21.692977745417117 28.193406633246905 28.3575245203745 21.75609110096148 50-51 21.593245036030666 28.249935250697828 28.38132734698834 21.77549236628317 52-53 21.729654006089298 28.2518095008004 28.333350636446873 21.685185856663427 54-55 21.70617657022659 28.205055278828656 28.254054618033148 21.83471353291161 56-57 21.82862715136983 28.333915856808407 28.090777882058916 21.746679109762848 58-59 21.624965248600002 28.511617510231858 28.277631298476795 21.585785942691345 60-61 21.855098280507292 28.542741897894558 28.041998715403544 21.560161106194613 62-63 21.720477292152427 28.67573235254442 27.991567035297845 21.61222332000531 64-65 21.686186738917552 28.56207968607553 28.047256608501986 21.70447696650493 66-67 21.784396616146207 28.48573108572926 27.940035262622096 21.789837035502437 68-69 21.739005614522885 28.411602104355758 28.063765343114955 21.7856269380064 70-71 21.728451659060756 28.181619398890025 28.136870254988988 21.953058687060228 72-73 21.812565448787836 28.213389542204254 28.08768970044887 21.88635530855904 74-75 21.693583506287613 28.32406296123543 28.051017539256375 21.931335993220582 76-77 21.771352342880114 28.23306147895283 28.017801020787235 21.977785157379813 78-79 21.72179935684318 28.244178411747743 28.012084955989963 22.021937275419113 80-81 21.731253019285475 28.254467605380384 28.051147574474143 21.963131800859994 82-83 21.746972510720337 28.23378703816472 28.13055296517191 21.88868748594303 84-85 21.93578677418478 28.156982512130252 28.032118429886953 21.875112283798014 86-87 21.763296116452356 28.141031802673204 28.145072316694637 21.950599764179803 88-89 21.78745891003887 28.130687767565405 28.112133197533517 21.969720124862214 90-91 21.81407929133389 28.121042931238822 28.154915064311993 21.9099627131153 92-93 21.84302351720439 27.986526518068803 28.242946538979268 21.927503425747535 94-95 21.651821588930364 28.093032256346834 28.277309710216592 21.977836444506206 96-97 21.587949257452767 28.153222959080153 28.35272577967859 21.90610200378849 98-99 21.795173127334177 28.669790034570568 28.328965536773932 21.20607130132132 100-101 20.33376011607607 32.26410453471848 26.225937569359097 21.17619777984636 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2159.0 1 1971.5 2 2781.5 3 3995.5 4 5293.0 5 7925.5 6 10289.0 7 12934.0 8 15279.5 9 15731.5 10 14552.0 11 13381.0 12 14935.5 13 20351.5 14 33719.5 15 52054.0 16 66637.5 17 74240.5 18 74707.5 19 70421.0 20 64145.5 21 58042.0 22 55112.0 23 58777.5 24 68380.5 25 83684.5 26 103573.0 27 124596.0 28 148109.5 29 173990.5 30 199983.0 31 227102.0 32 253202.5 33 278432.0 34 302770.0 35 322531.0 36 344322.5 37 366636.0 38 382580.5 39 394050.5 40 404732.5 41 415112.5 42 418989.0 43 421854.0 44 425309.5 45 428694.5 46 434479.0 47 436137.5 48 427992.5 49 414465.5 50 400343.5 51 381898.0 52 359226.5 53 336119.5 54 314218.0 55 288989.5 56 262766.5 57 235886.5 58 206100.0 59 176190.5 60 146432.5 61 118278.0 62 92682.0 63 70339.5 64 52031.5 65 38671.5 66 29512.5 67 22681.0 68 17228.0 69 12164.0 70 8236.5 71 5865.0 72 4054.0 73 2655.5 74 1762.0 75 1136.5 76 687.5 77 412.5 78 268.0 79 179.5 80 121.5 81 88.0 82 67.5 83 42.5 84 24.5 85 15.0 86 12.5 87 12.0 88 9.0 89 4.5 90 2.5 91 3.0 92 2.5 93 2.5 94 2.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.515408777203364E-6 2 0.01595734051937004 3 9.515408777203364E-6 4 8.563867899483029E-5 5 9.515408777203364E-6 6 9.515408777203364E-6 7 9.515408777203364E-6 8 0.0 9 0.0 10-11 1.2370031410364373E-4 12-13 6.185015705182186E-4 14-15 2.7594685453889755E-4 16-17 0.001898324051052071 18-19 9.515408777203364E-6 20-21 4.757847450850009E-6 22-23 1.712965588805275E-4 24-25 0.009718429216282453 26-27 0.019991661491798825 28-29 0.3484030241805533 30-31 0.3246784678816019 32-33 0.3184597720790206 34-35 0.1853238622895839 36-37 0.043942202943131864 38-39 0.03582073441645717 40-41 0.01467465163637206 42-43 0.013461255098425875 44-45 0.016840292769156686 46-47 0.01158281628845263 48-49 0.006792255761006048 50-51 0.0037462324475304102 52-53 0.0014166190795167212 54-55 5.667638546454748E-5 56-57 1.506300074089187E-4 58-59 0.0010057963730668476 60-61 0.001072775561559693 62-63 3.199141776899317E-4 64-65 9.688751547845342E-5 66-67 0.0032532649342541273 68-69 0.005664414667710312 70-71 0.006834432537899845 72-73 0.010388775363190408 74-75 0.007454899558409167 76-77 0.005882840173371367 78-79 0.0038154858818627143 80-81 0.004855220430814427 82-83 0.0017779247528906833 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002334443957041475 92-93 0.014797396014865143 94-95 0.001298717743503895 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 194.0 20-21 671.0 22-23 1519.0 24-25 3899.0 26-27 5556.0 28-29 8649.0 30-31 19316.0 32-33 25561.0 34-35 37702.0 36-37 51764.0 38-39 62105.0 40-41 66655.0 42-43 80758.0 44-45 96694.0 46-47 96279.0 48-49 83260.0 50-51 74134.0 52-53 71660.0 54-55 76371.0 56-57 81123.0 58-59 83154.0 60-61 83669.0 62-63 86831.0 64-65 94630.0 66-67 101419.0 68-69 94268.0 70-71 90657.0 72-73 88682.0 74-75 90847.0 76-77 91449.0 78-79 97355.0 80-81 100474.0 82-83 100973.0 84-85 104564.0 86-87 112751.0 88-89 122206.0 90-91 133812.0 92-93 145930.0 94-95 175591.0 96-97 272558.0 98-99 1012335.0 100-101 6281245.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.55161046977221 #Duplication Level Percentage of deduplicated Percentage of total 1 88.96032136794403 74.32778118200213 2 7.487934929218151 12.51258044858073 3 1.9232440160501332 4.820704046020231 4 0.7399894237225222 2.473092323304616 5 0.3317163246412081 1.3857716571443361 6 0.18463930231287787 0.925614663855365 7 0.10180080470038066 0.5953934825884892 8 0.06998965578977873 0.46781987659688234 9 0.0469360096465502 0.352942127549463 >10 0.15074808476998927 1.9268467515056131 >50 0.0020928426188225957 0.11421977055838398 >100 5.675688468425323E-4 0.08535161107540078 >500 1.9669738662640037E-5 0.011882059218321948 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.9030817554406727E-5 1.9030817554406727E-5 2 0.0 9.515408777203364E-6 0.0 1.9030817554406727E-5 1.9030817554406727E-5 3 0.0 9.515408777203364E-6 0.0 2.8546226331610094E-5 1.9030817554406727E-5 4 0.0 3.8061635108813455E-5 0.0 3.8061635108813455E-5 1.9030817554406727E-5 5 0.0 3.8061635108813455E-5 0.0 3.8061635108813455E-5 1.9030817554406727E-5 6 9.515408777203364E-6 3.8061635108813455E-5 1.9030817554406727E-5 3.8061635108813455E-5 1.9030817554406727E-5 7 9.515408777203364E-6 3.8061635108813455E-5 1.9030817554406727E-5 3.8061635108813455E-5 1.9030817554406727E-5 8 9.515408777203364E-6 4.757704388601682E-5 2.8546226331610094E-5 3.8061635108813455E-5 1.9030817554406727E-5 9 9.515408777203364E-6 8.563867899483027E-5 2.8546226331610094E-5 5.709245266322019E-5 1.9030817554406727E-5 10-11 9.515408777203364E-6 8.563867899483027E-5 2.8546226331610094E-5 1.3797342726944877E-4 1.9030817554406727E-5 12-13 9.515408777203364E-6 8.563867899483027E-5 2.8546226331610094E-5 1.7127735798966055E-4 1.9030817554406727E-5 14-15 1.9030817554406727E-5 1.3797342726944877E-4 3.8061635108813455E-5 1.7127735798966055E-4 1.9030817554406727E-5 16-17 2.8546226331610094E-5 1.4273113165805046E-4 3.8061635108813455E-5 2.188544018756774E-4 1.9030817554406727E-5 18-19 2.8546226331610094E-5 1.570042448238555E-4 3.8061635108813455E-5 2.5215833259588914E-4 1.9030817554406727E-5 20-21 2.8546226331610094E-5 1.7127735798966055E-4 3.8061635108813455E-5 2.949776720933043E-4 1.9030817554406727E-5 22-23 6.660786144042355E-5 1.7603506237826223E-4 4.757704388601682E-5 3.2352389842491436E-4 4.2819339497415137E-5 24-25 7.612327021762691E-5 1.9030817554406727E-4 4.757704388601682E-5 3.5207012475652446E-4 7.612327021762691E-5 26-27 8.563867899483027E-5 1.9982358432127064E-4 5.23347482746185E-5 3.663432379223295E-4 7.612327021762691E-5 28-29 8.563867899483027E-5 1.9982358432127064E-4 5.709245266322019E-5 5.661668222436001E-4 7.612327021762691E-5 30-31 9.515408777203364E-5 2.569160369844908E-4 5.709245266322019E-5 0.0011323336444872003 7.612327021762691E-5 32-33 1.04669496549237E-4 2.569160369844908E-4 5.709245266322019E-5 0.0023407905591920275 7.612327021762691E-5 34-35 1.2370031410364373E-4 3.0449308087050764E-4 6.660786144042355E-5 0.003868013667933168 8.563867899483027E-5 36-37 1.4273113165805046E-4 3.5682782914512614E-4 7.612327021762691E-5 0.006275412088565619 8.563867899483027E-5 38-39 1.4273113165805046E-4 3.615855335337278E-4 7.612327021762691E-5 0.010419372611037685 8.563867899483027E-5 40-41 1.6176194921245718E-4 3.7585864669953287E-4 7.612327021762691E-5 0.01482024917049424 8.563867899483027E-5 42-43 1.6176194921245718E-4 3.8537405547673623E-4 7.612327021762691E-5 0.01860738186382118 8.563867899483027E-5 44-45 1.7127735798966055E-4 4.2819339497415137E-4 7.612327021762691E-5 0.023269932164650828 8.563867899483027E-5 46-47 1.807927667668639E-4 4.662550300829649E-4 7.612327021762691E-5 0.028760323029097166 9.039638338343195E-5 48-49 1.9030817554406727E-4 4.7577043886016824E-4 7.612327021762691E-5 0.034169832918937285 9.515408777203364E-5 50-51 1.9030817554406727E-4 5.851976397980069E-4 7.612327021762691E-5 0.03928436513668409 9.515408777203364E-5 52-53 1.9982358432127064E-4 5.899553441866085E-4 7.612327021762691E-5 0.04489845631523408 9.991179216063532E-5 54-55 1.9982358432127064E-4 5.899553441866085E-4 8.563867899483027E-5 0.05047924356306385 1.0942720093783868E-4 56-57 1.9982358432127064E-4 5.994707529638119E-4 9.515408777203364E-5 0.05621703505571747 1.1418490532644038E-4 58-59 1.9982358432127064E-4 5.994707529638119E-4 9.515408777203364E-5 0.06184064164304466 1.1418490532644038E-4 60-61 2.09338993098474E-4 6.28016979295422E-4 9.515408777203364E-5 0.06693614304323706 1.1418490532644038E-4 62-63 2.09338993098474E-4 6.42290092461227E-4 9.515408777203364E-5 0.07199358280832066 1.2370031410364373E-4 64-65 2.09338993098474E-4 7.422018846218624E-4 1.04669496549237E-4 0.07756961235176182 1.2370031410364373E-4 66-67 2.09338993098474E-4 7.46959589010464E-4 1.04669496549237E-4 0.08304097239865377 1.284580184922454E-4 68-69 2.188544018756774E-4 7.517172933990657E-4 1.04669496549237E-4 0.08862175964648353 1.332157228808471E-4 70-71 2.188544018756774E-4 7.564749977876674E-4 1.04669496549237E-4 0.09324624831220438 1.4273113165805046E-4 72-73 2.188544018756774E-4 7.707481109534725E-4 1.04669496549237E-4 0.09746157440050546 1.7127735798966055E-4 74-75 2.188544018756774E-4 7.897789285078792E-4 1.04669496549237E-4 0.10111073366656295 1.7127735798966055E-4 76-77 2.188544018756774E-4 8.183251548394893E-4 1.04669496549237E-4 0.10444112673858413 1.7127735798966055E-4 78-79 2.188544018756774E-4 8.278405636166926E-4 1.04669496549237E-4 0.10740041886829438 1.7127735798966055E-4 80-81 2.188544018756774E-4 8.278405636166926E-4 1.04669496549237E-4 0.10883248788926347 1.807927667668639E-4 82-83 2.2836981065288076E-4 8.278405636166926E-4 1.04669496549237E-4 0.10923213505790602 2.188544018756774E-4 84-85 2.2836981065288076E-4 8.278405636166926E-4 1.04669496549237E-4 0.10958420518266254 2.188544018756774E-4 86-87 2.2836981065288076E-4 8.278405636166926E-4 1.04669496549237E-4 0.1097269363143206 2.2361210626427907E-4 88-89 2.2836981065288076E-4 8.37355972393896E-4 1.04669496549237E-4 0.10976975565381801 2.2836981065288076E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14085 0.0 47.88905 1 GTATCAA 25820 0.0 36.58327 1 TCAACGC 31700 0.0 29.483725 4 ATCAACG 31765 0.0 29.302526 3 CAACGCA 32410 0.0 28.824667 5 TATCAAC 33165 0.0 28.352592 2 AACGCAG 33315 0.0 28.106068 6 CTTATAC 7765 0.0 24.450048 1 ACGCAGA 38455 0.0 24.304962 7 CGCAGAG 38845 0.0 24.049963 8 GCAGAGT 45080 0.0 20.581776 9 GTACATG 29160 0.0 20.498014 1 TACATGG 29065 0.0 19.728321 2 GAGTACT 28080 0.0 19.620586 12-13 TATACAC 13285 0.0 19.137444 3 AGAGTAC 40885 0.0 19.08387 10-11 ACATGGG 29795 0.0 18.855654 3 CAGAGTA 44040 0.0 18.070274 10-11 GTGGTAT 7620 0.0 17.860636 1 AGTACTT 30650 0.0 17.724874 12-13 >>END_MODULE