##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139070_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10780114 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57143922596737 34.0 31.0 34.0 31.0 34.0 2 32.70964481451681 34.0 31.0 34.0 31.0 34.0 3 32.69689541316539 34.0 31.0 34.0 31.0 34.0 4 36.21865371739111 37.0 35.0 37.0 35.0 37.0 5 36.1771633398311 37.0 35.0 37.0 35.0 37.0 6 36.21800966112232 37.0 37.0 37.0 35.0 37.0 7 36.17818262404275 37.0 37.0 37.0 35.0 37.0 8 36.15528963793889 37.0 37.0 37.0 35.0 37.0 9 37.885679594854004 39.0 38.0 39.0 35.0 39.0 10-11 37.817995013781854 39.0 38.0 39.0 35.0 39.0 12-13 37.787689675637935 39.0 38.0 39.0 35.0 39.0 14-15 39.134588465391 40.0 39.0 41.0 36.0 41.0 16-17 39.107894499074874 40.0 38.0 41.0 36.0 41.0 18-19 39.072863283263985 40.0 38.5 41.0 36.0 41.0 20-21 39.059773143018816 40.0 39.0 41.0 36.0 41.0 22-23 38.94485037468152 40.0 38.0 41.0 35.0 41.0 24-25 38.808246710295315 40.0 38.0 41.0 35.0 41.0 26-27 38.757077557735855 40.0 38.0 41.0 34.5 41.0 28-29 38.70095164333322 40.0 38.0 41.0 35.0 41.0 30-31 38.62759907223744 40.0 38.0 41.0 35.0 41.0 32-33 38.51335093360783 40.0 38.0 41.0 34.0 41.0 34-35 38.31819894280933 40.0 38.0 41.0 34.0 41.0 36-37 38.449178849634606 40.0 38.0 41.0 34.0 41.0 38-39 38.42656440482568 40.0 38.0 41.0 34.0 41.0 40-41 38.407597269988365 40.0 38.0 41.0 34.0 41.0 42-43 38.446632527320986 40.0 38.0 41.0 34.0 41.0 44-45 38.38988215478859 40.0 38.0 41.0 34.0 41.0 46-47 38.33891531581469 40.0 38.0 41.0 34.0 41.0 48-49 38.18937935432116 40.0 38.0 41.0 33.0 41.0 50-51 38.19172764159907 40.0 38.0 41.0 33.0 41.0 52-53 38.1106510394703 40.0 37.0 41.0 33.0 41.0 54-55 37.965603958499926 40.0 37.0 41.0 33.0 41.0 56-57 37.80392951382845 40.0 37.0 41.0 33.0 41.0 58-59 37.64988652565013 39.5 36.0 41.0 33.0 41.0 60-61 37.468844306387766 39.0 36.0 41.0 32.0 41.0 62-63 37.26748406676569 39.0 35.5 41.0 32.0 41.0 64-65 36.989531332454035 38.5 35.0 40.0 31.5 41.0 66-67 36.64701785844164 38.0 35.0 40.0 31.0 41.0 68-69 36.32818168133318 37.5 35.0 40.0 31.0 41.0 70-71 36.03616035035289 37.0 35.0 39.5 31.0 41.0 72-73 35.7158740815927 36.5 34.0 39.0 30.5 41.0 74-75 35.35154470299301 36.0 34.0 39.0 30.0 40.0 76-77 34.384498620921896 35.0 33.0 37.0 29.0 39.0 78-79 34.66539791642874 35.0 34.0 37.0 30.0 39.0 80-81 34.464444346339576 35.0 34.0 37.0 30.0 39.0 82-83 34.181389462510054 35.0 34.0 36.5 29.5 39.0 84-85 33.924195667546755 35.0 33.5 36.0 29.0 37.0 86-87 33.67459554450056 35.0 33.0 36.0 29.0 37.0 88-89 33.428431424799115 35.0 33.0 35.0 29.0 36.5 90-91 33.23540394161614 35.0 33.0 35.0 29.0 36.0 92-93 33.13727601488542 35.0 33.0 35.0 29.0 36.0 94-95 33.053869810946715 34.5 33.0 35.0 29.0 36.0 96-97 33.028418248311056 34.0 33.0 35.0 29.0 35.0 98-99 33.14254131069195 34.0 33.0 35.0 29.0 35.0 100-101 31.282806393278165 32.5 29.0 34.5 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 5 1.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 1.0 18 1.0 19 6.0 20 57.0 21 330.0 22 1519.0 23 5061.0 24 12692.0 25 26128.0 26 46504.0 27 72326.0 28 105087.0 29 141450.0 30 182707.0 31 229617.0 32 292241.0 33 382060.0 34 526349.0 35 758171.0 36 1251477.0 37 2325961.0 38 2917982.0 39 1421261.0 40 81124.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.048624916756424 21.85813300067133 15.925503921063521 24.167738161508726 2 13.291532077297841 21.89581001523037 41.9954921220686 22.81716578540319 3 16.585283769341522 27.112707837609463 31.826945010120955 24.47506338292806 4 11.635770084942603 19.431947913670214 39.4308291859549 29.501452815432284 5 12.503544722313157 38.37955842940764 36.18419142437402 12.932705423905189 6 28.628953820605375 39.30297192672691 18.952420805314528 13.115653447353187 7 25.311047353779564 33.49873670131968 23.495611501588435 17.69460444331232 8 23.85037151280325 37.36459905383181 21.422011067973035 17.363018365391902 9 24.851502020433365 17.212583949722976 21.684652099657953 36.2512619301857 10-11 23.390347311088345 27.520218958906245 29.396796227866055 19.692637502139355 12-13 24.36067211738274 24.92392545620028 29.50036463183873 21.215037794578254 14-15 21.485631005170088 26.46006720169023 27.21135063300979 24.842951160129893 16-17 20.886857084759654 29.747547532978125 27.81930332352945 21.546292058732767 18-19 20.926309313612084 28.627841969018135 29.8344062038676 20.611442513502176 20-21 21.738955187341794 27.67155739319202 29.775452933262425 20.814034486203763 22-23 21.378069441423484 27.85175363485981 29.58393213304809 21.186244790668617 24-25 21.241078469562684 28.016734184504315 29.764951618467645 20.977235727465356 26-27 21.29704068171863 28.114519482466903 29.670419560762134 20.918020275052328 28-29 21.11383280641979 28.031163478604377 29.80322233023455 21.05178138474128 30-31 21.482036633458204 28.000887814687438 29.600684912272325 20.916390639582037 32-33 21.33793226270644 27.871087254307813 29.628981107945286 21.161999375040462 34-35 21.186118143438186 28.20122627095842 29.75217217402712 20.86048341157628 36-37 21.38963345101883 28.03357522545432 29.518500735516746 21.058290588010106 38-39 21.22516754344625 28.02163223900207 29.576755676824636 21.176444540727044 40-41 21.39915398634995 27.953852626346887 29.502950711651167 21.144042675652 42-43 21.4748072150011 28.005048474260736 29.284982707463907 21.235161603274257 44-45 21.400061917478308 28.296229665770145 28.99064374194718 21.313064674804366 46-47 21.629672966123405 28.08365222660958 28.590593305820693 21.696081501446322 48-49 21.587076472126643 28.22115831505779 28.546647146494248 21.645118066321324 50-51 21.386278836147007 28.301691480992396 28.617767436530862 21.694262246329732 52-53 21.57492261949996 28.289087114466412 28.606813806475234 21.5291764595584 54-55 21.580245529147014 28.281136132370115 28.433844969621347 21.704773368861527 56-57 21.80741828738216 28.50275056065258 28.11598102058477 21.5738501313805 58-59 21.440144289714237 28.7989751423154 28.469371845625524 21.29150872234484 60-61 21.7858053748142 28.88986851559493 28.011732586915116 21.312593522675755 62-63 21.56722312780262 29.055520913327236 27.969652710498615 21.407603248371522 64-65 21.519410596854478 28.91836762205287 28.084638021028134 21.477583760064515 66-67 21.65607511697502 28.76931947726038 27.998554776057972 21.57605062970663 68-69 21.64980210260667 28.573230103361908 28.125156855688 21.651810938343417 70-71 21.63765427882367 28.331558918879157 28.22684547860369 21.80394132369348 72-73 21.698019877263636 28.341422210056415 28.215472966340815 21.74508494633913 74-75 21.587320423659705 28.45460483986494 28.152518342861498 21.805556393613863 76-77 21.65157794092369 28.437800199988388 28.067949296821936 21.84267256226598 78-79 21.631613107733568 28.436414639137208 28.078485350083405 21.853486903045816 80-81 21.643387259340326 28.36057863867388 28.165305099451608 21.830729002534188 82-83 21.6679472291318 28.316890677388308 28.27183709842087 21.743324995059016 84-85 21.833694884210484 28.291914076686673 28.140734603896817 21.73365643520603 86-87 21.626495729930483 28.290392917891932 28.21596967552774 21.867141676649844 88-89 21.717094979192208 28.25489903881523 28.216898526584146 21.811107455408422 90-91 21.70686417408741 28.281100681064338 28.286812275229607 21.725222869618648 92-93 21.76200899128474 28.167714358251892 28.315526811938625 21.754749838524738 94-95 21.53145523006036 28.259912716548925 28.374613521404505 21.834018531986207 96-97 21.441058132361615 28.310823751357095 28.478398894719376 21.769719221561914 98-99 21.660058515404877 28.806324113945468 28.49273830340663 21.040879067243022 100-101 20.194694632862088 32.415883624836454 26.394293718491397 20.995128023810064 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2098.0 1 1949.5 2 2792.0 3 4045.0 4 5618.0 5 8653.0 6 11140.5 7 13534.0 8 15621.0 9 16015.5 10 14850.5 11 13612.0 12 15220.5 13 21080.5 14 35545.5 15 55555.0 16 70967.5 17 78718.5 18 79251.0 19 74491.0 20 67773.0 21 61573.5 22 58742.0 23 62582.0 24 73208.5 25 90247.5 26 112960.0 27 137906.5 28 163706.0 29 191446.5 30 217826.0 31 243400.5 32 270315.0 33 296496.0 34 321612.5 35 344526.5 36 368118.0 37 387837.5 38 397947.5 39 405123.5 40 416624.0 41 427138.5 42 430724.0 43 433803.5 44 437889.5 45 445109.0 46 455624.5 47 459060.0 48 445055.5 49 425778.0 50 409574.0 51 387406.0 52 359722.0 53 332662.0 54 309874.0 55 284184.0 56 256496.5 57 229615.0 58 202105.5 59 173579.0 60 143999.0 61 116112.0 62 89921.0 63 68121.0 64 51012.0 65 38045.0 66 29024.0 67 21999.0 68 16436.5 69 11685.0 70 8085.0 71 5804.0 72 4172.0 73 2921.5 74 1936.5 75 1248.0 76 836.5 77 504.0 78 324.0 79 230.0 80 163.0 81 109.0 82 78.5 83 52.0 84 35.5 85 29.0 86 20.5 87 14.0 88 6.5 89 2.0 90 1.0 91 1.0 92 0.5 93 0.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.78290192478484E-5 2 0.01530596058631662 3 2.78290192478484E-5 4 1.0203973724211079E-4 5 2.78290192478484E-5 6 2.78290192478484E-5 7 2.78290192478484E-5 8 9.276339749282799E-6 9 9.276339749282799E-6 10-11 8.34870577435452E-5 12-13 5.797712343301749E-4 14-15 2.597375129799184E-4 16-17 0.0018877351389790498 18-19 0.0 20-21 0.0 22-23 2.829606216227374E-4 24-25 0.009195902747436015 26-27 0.01987045816607136 28-29 0.34807859648705625 30-31 0.32464726036648905 32-33 0.3180557687912553 34-35 0.18673891101026358 36-37 0.04581001009256184 38-39 0.03792638873486684 40-41 0.015910159178055532 42-43 0.014852157178968352 44-45 0.01815009116789346 46-47 0.012681305245160443 48-49 0.007793085362247272 50-51 0.004423398137853639 52-53 0.0018610296146342965 54-55 2.1177301663855212E-4 56-57 4.068672064268744E-4 58-59 0.001483151780672541 60-61 0.001528304827080857 62-63 4.760377505259825E-4 64-65 1.9031385980244046E-4 66-67 0.00294258025446257 68-69 0.00507868523992754 70-71 0.006917657978730391 72-73 0.010743461942654573 74-75 0.007988850916086563 76-77 0.006002227769467701 78-79 0.0038594193926004654 80-81 0.004407642841133071 82-83 0.001438419338530588 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0024044986005385457 92-93 0.014855781307804367 94-95 0.0012571901978676258 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 190.0 20-21 729.0 22-23 1539.0 24-25 4199.0 26-27 5811.0 28-29 9470.0 30-31 21140.0 32-33 28113.0 34-35 41137.0 36-37 55548.0 38-39 67079.0 40-41 71808.0 42-43 87153.0 44-45 104617.0 46-47 102408.0 48-49 88048.0 50-51 77744.0 52-53 76681.0 54-55 83397.0 56-57 87964.0 58-59 90984.0 60-61 93091.0 62-63 97696.0 64-65 106837.0 66-67 116310.0 68-69 100539.0 70-71 94303.0 72-73 92314.0 74-75 94686.0 76-77 95835.0 78-79 101209.0 80-81 104664.0 82-83 104026.0 84-85 108448.0 86-87 116602.0 88-89 125628.0 90-91 136891.0 92-93 147787.0 94-95 177472.0 96-97 272361.0 98-99 1014960.0 100-101 6372696.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.41881326341833 #Duplication Level Percentage of deduplicated Percentage of total 1 88.74107220926784 74.02674931420437 2 7.619458993783752 12.712124539414402 3 2.0013355149414322 5.008471007950395 4 0.7560482077831024 2.5227457705280285 5 0.3414316985777368 1.4240913552933978 6 0.1778512960854104 0.8901686434083464 7 0.1108730455601559 0.6474228518470382 8 0.06775543974388652 0.452166270046085 9 0.04211137840896279 0.3161593090586172 >10 0.1394149261574024 1.7485800757868974 >50 0.002244826314753175 0.11932118426748527 >100 3.0753365789461094E-4 0.05243161954079392 >500 5.6959229004745554E-5 0.0312010498403191 >1k 3.797048860981862E-5 0.048367008813867234 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.78290192478484E-5 0.0 0.0 0.0 3 0.0 2.78290192478484E-5 0.0 0.0 0.0 4 0.0 1.020397372421108E-4 0.0 1.85526794985656E-5 0.0 5 0.0 1.020397372421108E-4 0.0 1.85526794985656E-5 0.0 6 8.34870577435452E-5 1.020397372421108E-4 0.0 1.85526794985656E-5 9.2763397492828E-6 7 8.34870577435452E-5 1.020397372421108E-4 0.0 1.85526794985656E-5 9.2763397492828E-6 8 8.34870577435452E-5 1.113160769913936E-4 0.0 1.85526794985656E-5 9.2763397492828E-6 9 8.34870577435452E-5 2.4118483348135278E-4 0.0 4.6381698746413996E-5 2.78290192478484E-5 10-11 8.81252276181866E-5 2.4118483348135278E-4 0.0 4.6381698746413996E-5 2.78290192478484E-5 12-13 9.276339749282799E-5 2.504611732306356E-4 0.0 4.6381698746413996E-5 2.78290192478484E-5 14-15 9.276339749282799E-5 3.339482309741808E-4 0.0 7.421071799426239E-5 4.17435288717726E-5 16-17 1.5769777573780759E-4 3.432245707234636E-4 0.0 8.34870577435452E-5 4.6381698746413996E-5 18-19 1.5769777573780759E-4 3.756917598459534E-4 0.0 9.2763397492828E-5 4.6381698746413996E-5 20-21 1.5769777573780759E-4 4.081589489684432E-4 0.0 1.020397372421108E-4 4.6381698746413996E-5 22-23 1.5769777573780759E-4 4.777314970880642E-4 0.0 1.020397372421108E-4 6.02962083703382E-5 24-25 1.5769777573780759E-4 5.241131958344783E-4 0.0 1.15954246866035E-4 8.34870577435452E-5 26-27 1.5769777573780759E-4 5.473040452076852E-4 0.0 1.6233594561244902E-4 8.34870577435452E-5 28-29 1.669741154870904E-4 5.473040452076852E-4 0.0 3.803299297205948E-4 8.34870577435452E-5 30-31 1.669741154870904E-4 6.447056125751546E-4 0.0 0.001057502731418239 8.34870577435452E-5 32-33 1.669741154870904E-4 6.539819523244374E-4 0.0 0.0023840193155656797 8.34870577435452E-5 34-35 1.948031347349388E-4 7.699361991904724E-4 0.0 0.004322774323165785 8.34870577435452E-5 36-37 2.040794744842216E-4 8.858904460565073E-4 0.0 0.007096399908201342 8.34870577435452E-5 38-39 2.040794744842216E-4 8.905286159311488E-4 0.0 0.010913613715031214 9.276339749282799E-5 40-41 2.040794744842216E-4 0.0010111210326718251 0.0 0.015333789605564467 1.020397372421108E-4 42-43 2.1335581423350438E-4 0.001034311882045032 0.0 0.0197400509864738 1.020397372421108E-4 44-45 2.272703238574286E-4 0.0011363516192871431 0.0 0.025375427384163096 1.020397372421108E-4 46-47 2.3190849373207E-4 0.0012152005071560468 0.0 0.031173139727464848 1.0667790711675219E-4 48-49 2.3654666360671138E-4 0.0012152005071560468 0.0 0.037045062788760866 1.113160769913936E-4 50-51 2.55099343105277E-4 0.0013357929238967232 0.0 0.04256912310945877 1.113160769913936E-4 52-53 2.597375129799184E-4 0.0013357929238967232 0.0 0.048065354410908825 1.2059241674067639E-4 54-55 2.78290192478484E-4 0.0013404310937713646 0.0 0.05376102701696847 1.298687564899592E-4 56-57 3.061192117263324E-4 0.0013543456033952887 0.0 0.060027194517609 1.298687564899592E-4 58-59 3.1539555147561517E-4 0.0013543456033952887 0.0 0.06554197849855763 1.298687564899592E-4 60-61 3.525009104727464E-4 0.0013868127925177787 0.0 0.07101501895063447 1.298687564899592E-4 62-63 3.803299297205948E-4 0.0014239181515149097 0.0 0.07613092032236393 1.298687564899592E-4 64-65 3.803299297205948E-4 0.0016372739657484143 0.0 0.0814601775083269 1.298687564899592E-4 66-67 3.849680995952362E-4 0.0016558266452469798 0.0 0.087318186059999 1.345069263646006E-4 68-69 3.9424443934451896E-4 0.001669741154870904 0.0 0.09293964794806438 1.39145096239242E-4 70-71 3.988826092191604E-4 0.0016975701741187522 0.0 0.09838949755076801 1.484214359885248E-4 72-73 4.17435288717726E-4 0.0017207610234919594 0.0 0.10230875109484 1.5769777573780759E-4 74-75 4.17435288717726E-4 0.0017764190619876561 0.0 0.10580129301044497 1.5769777573780759E-4 76-77 4.17435288717726E-4 0.00185526794985656 0.0 0.10870942552184512 1.5769777573780759E-4 78-79 4.17435288717726E-4 0.001901649648602974 0.0 0.1115294328056271 1.5769777573780759E-4 80-81 4.359879682162916E-4 0.0019109259883522568 0.0 0.11274463331278314 1.669741154870904E-4 82-83 4.4062613809093295E-4 0.0019248404979761808 0.0 0.113199173960498 1.762504552363732E-4 84-85 4.452643079655744E-4 0.0019619458569733123 0.0 0.11364443826846359 1.762504552363732E-4 86-87 4.452643079655744E-4 0.002003689385845085 0.0 0.11376966885507889 1.762504552363732E-4 88-89 4.452643079655744E-4 0.00208717644358863 0.0 0.11381141238395068 1.762504552363732E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14820 0.0 48.802223 1 GTATCAA 27325 0.0 36.45032 1 CTTATAC 9580 0.0 35.954563 1 ATCAACG 33560 0.0 29.141653 3 TCAACGC 33735 0.0 29.078484 4 CAACGCA 34570 0.0 28.388391 5 TATCAAC 35210 0.0 28.118898 2 AACGCAG 35585 0.0 27.662088 6 TATACAC 15225 0.0 25.906126 3 ACGCAGA 40365 0.0 24.344336 7 CGCAGAG 41040 0.0 23.912931 8 TTATACA 15700 0.0 23.695364 2 ACATCTC 16495 0.0 21.263268 8 GCAGAGT 46555 0.0 20.888853 9 ACACATC 16980 0.0 20.481087 6 GTACATG 29780 0.0 19.82796 1 TACATGG 29430 0.0 19.60253 2 TACACAT 19525 0.0 19.505726 5 GAGTACT 29795 0.0 19.188251 12-13 AGAGTAC 42880 0.0 19.143763 10-11 >>END_MODULE