##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139068_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12934512 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.57906490789912 34.0 31.0 34.0 31.0 34.0 2 32.711763922751786 34.0 31.0 34.0 31.0 34.0 3 33.418217092380445 34.0 31.0 34.0 31.0 37.0 4 36.16794286479459 37.0 35.0 37.0 35.0 37.0 5 36.11031935337027 37.0 35.0 37.0 35.0 37.0 6 36.14247186132728 37.0 36.0 37.0 35.0 37.0 7 36.146321020847175 37.0 36.0 37.0 35.0 37.0 8 36.41692852424583 37.0 37.0 37.0 35.0 39.0 9 37.758711267962795 39.0 38.0 39.0 35.0 39.0 10-11 37.70546465146887 39.0 37.0 39.0 35.0 39.0 12-13 37.82192200215981 39.0 37.5 39.0 35.0 40.0 14-15 38.979795256287986 40.0 38.0 41.0 35.0 41.0 16-17 38.94298787615644 40.0 38.0 41.0 35.0 41.0 18-19 38.94484967813243 40.0 38.0 41.0 35.0 41.0 20-21 38.90865701743013 40.0 38.0 41.0 35.0 41.0 22-23 38.80767991145236 40.0 38.0 41.0 35.0 41.0 24-25 38.67096982241844 40.0 38.0 41.0 34.0 41.0 26-27 38.61814344917696 40.0 38.0 41.0 34.0 41.0 28-29 38.55768804250826 40.0 38.0 41.0 34.0 41.0 30-31 38.47153754943716 40.0 38.0 41.0 34.0 41.0 32-33 38.3617198615934 40.0 38.0 41.0 34.0 41.0 34-35 38.27362624982449 40.0 38.0 41.0 34.0 41.0 36-37 38.423197109818204 40.0 38.0 41.0 34.0 41.0 38-39 38.46954597286274 40.0 38.0 41.0 34.0 41.0 40-41 38.405864148334445 40.0 38.0 41.0 34.0 41.0 42-43 38.37869379189719 40.0 38.0 41.0 34.0 41.0 44-45 38.34761692506058 40.0 38.0 41.0 34.0 41.0 46-47 38.25912950112632 40.0 38.0 41.0 33.0 41.0 48-49 38.18905435059025 40.0 38.0 41.0 33.0 41.0 50-51 38.11518452370041 40.0 37.0 41.0 33.0 41.0 52-53 38.047479232873044 40.0 37.0 41.0 33.0 41.0 54-55 37.919148139208964 40.0 37.0 41.0 33.0 41.0 56-57 37.76494837808579 40.0 36.5 41.0 33.0 41.0 58-59 37.649017885183795 39.5 36.0 41.0 33.0 41.0 60-61 37.49526777038655 39.0 36.0 41.0 32.5 41.0 62-63 37.27274435834978 39.0 35.5 41.0 32.0 41.0 64-65 36.96018960840978 38.5 35.0 40.0 31.5 41.0 66-67 36.67785714764777 38.0 35.0 40.0 31.0 41.0 68-69 36.40212796897613 37.5 35.0 40.0 31.0 41.0 70-71 36.09890057425722 37.0 35.0 39.5 31.0 41.0 72-73 35.78424830688212 36.5 34.5 39.0 31.0 41.0 74-75 35.35892527811258 36.0 34.0 39.0 30.0 40.0 76-77 34.57649499330605 35.0 33.5 37.0 29.5 39.0 78-79 34.82164658168533 35.0 34.0 37.0 30.0 39.0 80-81 34.64443141357629 35.0 34.0 37.0 30.0 39.0 82-83 34.39626227975178 35.0 34.0 36.5 30.0 39.0 84-85 34.133213938430984 35.0 34.0 36.0 30.0 37.0 86-87 33.90244927662198 35.0 34.0 36.0 30.0 37.0 88-89 33.69710751863999 35.0 33.5 35.0 30.0 37.0 90-91 33.5302564254408 35.0 33.0 35.0 29.5 36.0 92-93 33.40529223212073 35.0 33.0 35.0 29.0 36.0 94-95 33.355502834261756 35.0 33.0 35.0 29.0 36.0 96-97 33.373209926382245 35.0 33.0 35.0 30.0 35.5 98-99 33.37692850734021 35.0 33.0 35.0 30.0 35.0 100-101 31.67057003963961 33.0 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 0.0 18 4.0 19 18.0 20 71.0 21 461.0 22 2063.0 23 6519.0 24 16566.0 25 34485.0 26 59956.0 27 93749.0 28 132483.0 29 176448.0 30 226031.0 31 283002.0 32 353777.0 33 454271.0 34 616468.0 35 863784.0 36 1388639.0 37 2619750.0 38 3593474.0 39 1878835.0 40 133657.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.048785941481704 0.00674977367382604 27.400176607480248 30.544287677364217 2 13.773486307373773 25.427103908564476 38.247497567315605 22.551912216746146 3 15.198254097255468 25.02756965241518 34.52611895988036 25.248057290448994 4 12.258243681709832 25.032332104991667 37.71983821268247 24.989586000616026 5 16.69732882075489 36.85937281592069 32.854521299296024 13.588777064028394 6 27.008595299150056 38.59362456040088 20.51355319783228 13.884226942616776 7 25.105168250646027 33.560632206302024 23.06925843046881 18.26494111258314 8 23.564520307651414 32.84546015623786 22.46277767482322 21.12724186128751 9 23.088431349688754 20.909222059316058 24.438687578994113 31.56365901200108 10-11 23.931804295365918 26.697971177903106 29.209585315990605 20.16063921074037 12-13 24.263527045780325 24.783211121467296 29.08576694966999 21.86749488308239 14-15 21.653304931794676 27.305791742176865 27.163834302040268 23.87706902398819 16-17 20.756435215972402 29.710426249959266 28.141847490722782 21.391291043345547 18-19 20.879652891400376 28.683372722787897 29.934243358716845 20.502731027094878 20-21 21.673389115393064 27.942244901761843 29.7871498180729 20.597216164772195 22-23 21.38539286576863 27.837266799929466 29.59469105631304 21.182649277988872 24-25 21.275681862007655 28.046971439807077 29.78707308860859 20.890273609576678 26-27 21.18671349385908 28.264856487331897 29.65827566776519 20.890154351043833 28-29 21.059675425448646 28.053807595503272 29.707588811231073 21.178928167817006 30-31 21.268402461944817 28.050043885523536 29.6962779553896 20.985275697142054 32-33 20.969589980767893 28.1742377402878 29.782940257385075 21.073232021559228 34-35 21.029497131412324 28.00056097727769 29.675120306440668 21.294821584869318 36-37 21.125849197908426 28.164906788346073 29.781675645560412 20.927568368185085 38-39 21.08520001027767 28.297020468173184 29.66421489540498 20.953564626144157 40-41 21.369904000985773 28.115951159324737 29.377885874631392 21.136258965058097 42-43 21.40583194615381 28.106341755864477 29.326012431191156 21.161813866790553 44-45 21.32990009189957 28.55250186655872 28.95680591049492 21.160792131046787 46-47 21.489052263077188 28.18581332585929 28.644962163259617 21.680172247803906 48-49 21.425176062685217 28.344393754139546 28.786404056780924 21.444026126394313 50-51 21.30502153335336 28.569533363840772 28.531725427574955 21.593719675230908 52-53 21.487659848477225 28.411639383847632 28.584001569558616 21.51669919811653 54-55 21.484710089335803 28.488450520164893 28.52028397402952 21.506555416469787 56-57 21.625550507311264 28.822677340336018 28.101717065329574 21.450055087023152 58-59 21.479600429475994 28.8017175589392 28.478566849223437 21.240115162361377 60-61 21.653479965280923 28.904137920395556 28.165272433116577 21.277109681206944 62-63 21.475587357520975 29.04983511067856 28.099127261687933 21.375450270112527 64-65 21.463640446517473 28.85435124860291 28.157534548397134 21.524473756482486 66-67 21.50034827559105 28.817856032126482 28.12024189445707 21.5615537978254 68-69 21.607887042014564 28.74789920793836 28.205443261539916 21.43877048850716 70-71 21.582463333067682 28.342131109556572 28.28936566723634 21.786039890139406 72-73 21.60355217561011 28.467129221783754 28.2983863322969 21.630932270309238 74-75 21.503420464707997 28.60300499292147 28.239725287961598 21.653849254408936 76-77 21.633353835004456 28.432256280424717 28.10833464448672 21.826055240084106 78-79 21.47515496334791 28.49964543000333 28.251509153927184 21.773690452721574 80-81 21.53589992411166 28.55242804835067 28.178579654548063 21.733092372989613 82-83 21.647078785528283 28.334316107738456 28.336789533254713 21.681815573478545 84-85 21.73509984277663 28.36080295501169 28.303503281779157 21.60059392043252 86-87 21.57483106747642 28.40889343801515 28.23344309939853 21.782832395109896 88-89 21.627958054798032 28.300666805121782 28.283123776141885 21.7882513639383 90-91 21.702620526108625 28.3067710745399 28.31794993159492 21.67265846775656 92-93 21.65113784162062 28.312031044697942 28.33120909261965 21.70562202106179 94-95 21.577381291201224 28.248649408192122 28.366764864912632 21.80720443569403 96-97 21.414546346369555 28.392751585075317 28.552556413840673 21.640145654714456 98-99 21.85454214552209 29.3095958570728 28.37782075859981 20.4580412388053 100-101 21.935583569983052 31.552904474660153 25.46258859487398 21.048923360482817 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2334.0 1 2104.0 2 3257.0 3 4927.0 4 6949.0 5 11009.0 6 14020.0 7 16356.0 8 18187.5 9 18331.0 10 17057.5 11 15639.5 12 17453.5 13 23668.0 14 39574.5 15 63956.0 16 85151.5 17 96545.5 18 97399.5 19 91160.0 20 82552.0 21 74924.5 22 71884.0 23 76857.5 24 89055.5 25 108781.0 26 137220.5 27 169474.5 28 201493.5 29 233025.5 30 263104.0 31 291948.0 32 323944.5 33 355607.0 34 389515.5 35 420955.5 36 450571.5 37 476957.5 38 490347.5 39 499200.5 40 510204.5 41 520445.0 42 524085.5 43 528032.5 44 533980.5 45 535513.5 46 536972.0 47 536286.0 48 535275.5 49 523863.0 50 500434.5 51 475692.0 52 446832.5 53 414703.5 54 381875.0 55 348107.0 56 311647.0 57 276142.5 58 240063.0 59 205481.5 60 170732.5 61 136514.5 62 106116.0 63 79836.5 64 58224.0 65 42741.0 66 31807.5 67 23735.0 68 17925.0 69 12534.0 70 8477.0 71 6100.5 72 4417.0 73 3093.5 74 2075.0 75 1336.5 76 889.0 77 591.0 78 383.5 79 246.5 80 162.0 81 106.5 82 81.0 83 59.0 84 43.0 85 32.0 86 21.5 87 16.5 88 11.0 89 7.0 90 5.0 91 2.5 92 2.5 93 2.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.005759784366043342 2 0.017750959603269143 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 2.319376254782554E-5 9 3.092501673043405E-5 10-11 4.716065051391193E-4 12-13 0.0016351602596217005 14-15 1.159688127391277E-5 16-17 3.865627091304256E-6 18-19 7.731254182608512E-6 20-21 4.63892430149204E-5 22-23 6.959113622337333E-4 24-25 0.01173262666364315 26-27 0.06430059609875156 28-29 0.32378224427493685 30-31 0.31188118044216184 32-33 0.30995849488985405 34-35 0.13731152018590825 36-37 0.028383246350248557 38-39 0.024813158648906573 40-41 0.010333521650691426 42-43 0.00735457849891374 44-45 0.0028041978721100973 46-47 0.001978048635852013 48-49 0.0020683139372593036 50-51 0.001567337647932561 52-53 1.7187978761191942E-4 54-55 3.805804672487884E-5 56-57 2.1348203979868816E-4 58-59 4.744138885959743E-4 60-61 0.00234005781119359 62-63 0.001990372147190134 64-65 0.002363483143891925 66-67 0.007782391016238401 68-69 0.011164376039708162 70-71 0.015235596551074109 72-73 0.013683511885680249 74-75 0.010163010732535295 76-77 0.0047771379337076285 78-79 0.0022916980367963724 80-81 0.001909995165904818 82-83 1.830331531907848E-4 84-85 2.0041854406650126E-5 86-87 2.0312625525678054E-5 88-89 8.140311352483365E-4 90-91 0.004013969661088034 92-93 0.013592583026653119 94-95 2.9816094868959076E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 265.0 20-21 1105.0 22-23 2192.0 24-25 4878.0 26-27 7953.0 28-29 14376.0 30-31 27335.0 32-33 36717.0 34-35 54496.0 36-37 72977.0 38-39 85697.0 40-41 91368.0 42-43 111016.0 44-45 131521.0 46-47 127974.0 48-49 112353.0 50-51 100721.0 52-53 100728.0 54-55 110260.0 56-57 117868.0 58-59 117960.0 60-61 119241.0 62-63 121052.0 64-65 126893.0 66-67 137068.0 68-69 127074.0 70-71 119875.0 72-73 117007.0 74-75 119276.0 76-77 122135.0 78-79 127134.0 80-81 128836.0 82-83 127561.0 84-85 131789.0 86-87 138445.0 88-89 148373.0 90-91 157999.0 92-93 165945.0 94-95 193613.0 96-97 343362.0 98-99 1298324.0 100-101 7433750.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.12016282672214 #Duplication Level Percentage of deduplicated Percentage of total 1 87.31133144771024 70.8270942365616 2 8.200084228151196 13.30384335560922 3 2.3759287170714956 5.782071731805742 4 0.9575046688799258 3.1069173858754495 5 0.469859211649243 1.9057527877310945 6 0.2390586513918152 1.1635486035624392 7 0.13761535510173475 0.7814366009316938 8 0.08752377331568936 0.5679954194062271 9 0.0572076955756088 0.41766278220314434 >10 0.16136566629796942 1.9238533179554933 >50 0.0020056689978226803 0.10954970802919432 >100 4.8072321249992376E-4 0.0770865974846435 >500 1.7096329079245184E-5 0.013854701416489461 >1k 1.7096315696336545E-5 0.01933277142755269 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.319376254782554E-5 0.0 0.0 0.0 3 0.0 2.319376254782554E-5 0.0 0.0 0.0 4 0.0 2.319376254782554E-5 0.0 7.731254182608514E-6 0.0 5 0.0 2.319376254782554E-5 0.0 7.731254182608514E-6 0.0 6 0.0 2.319376254782554E-5 0.0 7.731254182608514E-6 0.0 7 0.0 2.319376254782554E-5 0.0 2.319376254782554E-5 0.0 8 0.0 4.638752509565108E-5 0.0 2.319376254782554E-5 0.0 9 7.731254182608514E-6 1.2370006692173622E-4 0.0 2.319376254782554E-5 0.0 10-11 7.731254182608514E-6 1.2370006692173622E-4 0.0 2.70593896391298E-5 0.0 12-13 7.731254182608514E-6 1.2370006692173622E-4 0.0 3.8656270913042566E-5 0.0 14-15 1.1596881273912771E-5 2.3193762547825538E-4 0.0 4.638752509565108E-5 0.0 16-17 3.0925016730434054E-5 2.551313880260809E-4 0.0 5.411877927825959E-5 0.0 18-19 4.638752509565108E-5 2.551313880260809E-4 0.0 8.117816891738938E-5 0.0 20-21 4.638752509565108E-5 2.5899701511738517E-4 0.0 1.0823755855651918E-4 0.0 22-23 5.0253152186955334E-5 3.247126756695575E-4 0.0 1.2756569401304045E-4 0.0 24-25 8.504379600869364E-5 3.749658278565129E-4 0.0 1.8941572747390855E-4 0.0 26-27 8.504379600869364E-5 4.097564716782512E-4 0.0 2.4353450675216817E-4 0.0 28-29 9.66406772826064E-5 4.1748772586085967E-4 0.0 5.527846740565087E-4 0.0 30-31 1.0823755855651918E-4 4.7547213223042355E-4 0.0 0.0014418789050564878 0.0 32-33 1.1596881273912769E-4 4.793377593217278E-4 0.0 0.003092501673043405 0.0 34-35 1.1983443983043195E-4 5.373221656912916E-4 0.0 0.005079433997973793 0.0 36-37 1.3143132110434472E-4 5.953065720608555E-4 0.0 0.0079013417746259 0.0 38-39 1.3143132110434472E-4 6.223659616999853E-4 0.0 0.012563288046738834 0.0 40-41 1.3916257528695324E-4 7.112753847999831E-4 0.0 0.01763499079053002 0.0 42-43 1.3916257528695324E-4 8.465723329956322E-4 0.0 0.02251341217975599 0.0 44-45 1.50759456560866E-4 9.818692811912812E-4 0.0 0.028103108953781944 0.0 46-47 1.5462508365217026E-4 9.818692811912812E-4 0.0 0.03441181236679049 0.0 48-49 1.5462508365217026E-4 9.818692811912812E-4 0.0 0.04034554995194252 0.0 50-51 1.584907107434745E-4 0.001086241212656496 0.0 0.04637979384146847 0.0 52-53 1.6235633783477876E-4 0.0010978380939304089 0.0 0.05225554702025094 0.0 54-55 1.6235633783477876E-4 0.0011017037210217131 0.0 0.05798054074247254 0.0 56-57 1.6622196492608303E-4 0.001113300602295626 0.0 0.06383696578579849 0.0 58-59 1.700875920173873E-4 0.0011210318564782345 0.0 0.06876564032721141 0.0 60-61 1.700875920173873E-4 0.0011519568732086683 0.0 0.07409247445902868 0.0 62-63 1.700875920173873E-4 0.0011712850086651897 0.0 0.07938065231993291 0.0 64-65 1.700875920173873E-4 0.0013645663632304026 0.0 0.08466883018083712 0.0 66-67 1.700875920173873E-4 0.0013761632445043154 0.0 0.0902778550903196 0.0 68-69 1.778188461999958E-4 0.0013877601257782281 0.0 0.09605310196472816 0.0 70-71 1.778188461999958E-4 0.0013993570070521407 0.0 0.10119052036907152 0.0 72-73 1.778188461999958E-4 0.001403222634143445 0.0 0.10578288535354098 0.0 74-75 1.778188461999958E-4 0.0014264163966912706 0.0 0.10979927190140609 0.0 76-77 1.778188461999958E-4 0.001461207040513009 0.0 0.11344842387559731 0.0 78-79 2.0101260874782134E-4 0.001476669548878226 0.0 0.11644428487135812 0.0 80-81 2.048782358391256E-4 0.001476669548878226 0.0 0.11772380743857982 0.0 82-83 2.0874386293042983E-4 0.0014805351759695302 0.0 0.11822633896044937 0.0 84-85 2.0874386293042983E-4 0.0014844008030608345 0.0 0.1186206329237624 0.0 86-87 2.0874386293042983E-4 0.0015153258197912686 0.0 0.11875979549904936 0.0 88-89 2.0874386293042983E-4 0.0015617133448869195 0.0 0.1187907205157798 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18960 0.0 46.70019 1 GTATCAA 33565 0.0 34.73394 1 CTTATAC 11490 0.0 33.162426 1 ATCAACG 39125 0.0 29.145168 3 TCAACGC 41215 0.0 27.698082 4 CAACGCA 41965 0.0 27.183313 5 TATCAAC 42385 0.0 27.126598 2 AACGCAG 42340 0.0 26.9526 6 ACGCAGA 43100 0.0 26.478153 7 TATACAC 17035 0.0 25.006351 3 CGCAGAG 49590 0.0 22.995897 8 TTATACA 18140 0.0 21.537563 2 ACATCTC 18055 0.0 20.890364 8 ACACATC 18450 0.0 20.716267 6 GCAGAGT 56765 0.0 20.029928 9 GAGTACT 33505 0.0 19.26011 12-13 GTACATG 38175 0.0 18.947933 1 TACATGG 37595 0.0 18.8245 2 ACATGGG 36435 0.0 18.762001 3 AGAGTAC 51285 0.0 18.67346 10-11 >>END_MODULE