##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139065_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8816065 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45567574649234 34.0 31.0 34.0 31.0 34.0 2 32.58549171313959 34.0 31.0 34.0 31.0 34.0 3 32.64335358235222 34.0 31.0 34.0 31.0 34.0 4 36.178369261115925 37.0 35.0 37.0 35.0 37.0 5 36.094958124741595 37.0 35.0 37.0 35.0 37.0 6 36.13172906506474 37.0 36.0 37.0 35.0 37.0 7 36.081049311682705 37.0 35.0 37.0 35.0 37.0 8 36.0555367956112 37.0 35.0 37.0 35.0 37.0 9 37.76400854576276 39.0 38.0 39.0 35.0 39.0 10-11 37.6926577220109 39.0 37.0 39.0 35.0 39.0 12-13 37.63417828702488 39.0 37.0 39.0 35.0 39.0 14-15 38.963048933963165 40.0 38.0 41.0 35.0 41.0 16-17 38.93597892030061 40.0 38.0 41.0 35.0 41.0 18-19 38.935928897983395 40.0 38.0 41.0 35.0 41.0 20-21 38.90452971473124 40.0 38.0 41.0 35.0 41.0 22-23 38.80104528452951 40.0 38.0 41.0 35.0 41.0 24-25 38.67368862846526 40.0 38.0 41.0 34.0 41.0 26-27 38.59815543139558 40.0 38.0 41.0 34.0 41.0 28-29 38.53914783241506 40.0 38.0 41.0 34.0 41.0 30-31 38.4673901360284 40.0 38.0 41.0 34.0 41.0 32-33 38.35752727484194 40.0 38.0 41.0 34.0 41.0 34-35 38.24505323088665 40.0 38.0 41.0 34.0 41.0 36-37 38.388954980087306 40.0 38.0 41.0 34.0 41.0 38-39 38.45872163764505 40.0 38.0 41.0 34.0 41.0 40-41 38.38828189004944 40.0 38.0 41.0 34.0 41.0 42-43 38.35033447197739 40.0 38.0 41.0 34.0 41.0 44-45 38.31540786177504 40.0 38.0 41.0 33.5 41.0 46-47 38.220721300080946 40.0 38.0 41.0 33.0 41.0 48-49 38.14108806030601 40.0 37.5 41.0 33.0 41.0 50-51 38.0699978723542 40.0 37.0 41.0 33.0 41.0 52-53 37.993564653746645 40.0 37.0 41.0 33.0 41.0 54-55 37.8642336838231 40.0 37.0 41.0 33.0 41.0 56-57 37.70329786605256 40.0 36.0 41.0 33.0 41.0 58-59 37.567806450857574 39.0 36.0 41.0 33.0 41.0 60-61 37.41217859288843 39.0 36.0 41.0 32.0 41.0 62-63 37.18427849670532 39.0 35.0 40.5 32.0 41.0 64-65 36.8484305104074 38.0 35.0 40.0 31.5 41.0 66-67 36.54375085877906 38.0 35.0 40.0 31.0 41.0 68-69 36.257193033364004 37.0 35.0 40.0 31.0 41.0 70-71 35.94511668258393 37.0 35.0 39.0 31.0 41.0 72-73 35.63477212890302 36.0 34.0 39.0 31.0 41.0 74-75 35.311528619862244 36.0 34.0 39.0 30.0 40.0 76-77 34.33762032273022 35.0 33.0 37.0 29.0 39.0 78-79 34.662326018140874 35.0 34.0 37.0 30.0 39.0 80-81 34.51662140269269 35.0 34.0 37.0 30.0 39.0 82-83 34.287859833386996 35.0 34.0 36.0 30.0 38.5 84-85 34.037865183975356 35.0 34.0 36.0 30.0 37.0 86-87 33.82031406394411 35.0 34.0 35.5 30.0 37.0 88-89 33.62573720214064 35.0 33.0 35.0 29.5 36.5 90-91 33.465024362676914 35.0 33.0 35.0 29.0 36.0 92-93 33.34042495227891 35.0 33.0 35.0 29.0 36.0 94-95 33.28597735136337 35.0 33.0 35.0 29.0 36.0 96-97 33.30911164870345 35.0 33.0 35.0 29.5 35.0 98-99 33.357074705779496 35.0 33.0 35.0 30.0 35.0 100-101 31.900274636581827 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 1.0 15 0.0 16 0.0 17 1.0 18 3.0 19 12.0 20 47.0 21 305.0 22 1328.0 23 4471.0 24 11426.0 25 23694.0 26 41548.0 27 64764.0 28 93046.0 29 123361.0 30 157835.0 31 197485.0 32 246337.0 33 318328.0 34 433933.0 35 615688.0 36 1001171.0 37 1868243.0 38 2385629.0 39 1167521.0 40 59887.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.994830004011995 21.33871351389243 15.391193413929418 24.275263068166158 2 13.80534132116431 21.676446101995513 41.372253058007004 23.145959518833177 3 17.136653530794135 26.441340816341807 31.251924044998773 25.17008160786528 4 12.061382962143414 18.588140600644596 38.73911050081091 30.61136593640108 5 12.897188438237894 38.02641565206956 35.80371097704519 13.272684932647358 6 29.836340742197677 38.455212594377464 18.504545283885854 13.203901379539001 7 26.15332106330468 33.021103980439335 23.181642778828007 17.64393217742797 8 24.26542907748525 37.267942103421426 20.94333469637531 17.523294122718017 9 25.3029441139556 16.845327252010957 21.436581967124788 36.41514666690865 10-11 23.949657612326636 27.06540812587979 28.991819447075386 19.99311481471819 12-13 24.783927801514512 24.617807854178334 29.22182020955501 21.376444134752145 14-15 21.821992527843353 26.031536187498673 26.95981908022998 25.186652204427993 16-17 21.33751849606372 29.231834157302604 27.58373492028473 21.846912426348943 18-19 21.3646677968005 28.27225071502989 29.51952486738698 20.84355662078263 20-21 22.142045935346406 27.33362735149304 29.508312478688786 21.01601423447177 22-23 21.87673018047337 27.318021386810287 29.338375867305917 21.46687256541043 24-25 21.701165025297158 27.475441870440655 29.38597441857958 21.43741868568261 26-27 21.6221189209075 27.592508484699156 29.351779203658896 21.433593390734448 28-29 21.544213267313623 27.65223135055767 29.32088800676213 21.482667375366578 30-31 21.813372189266147 27.506451238629833 29.244540818637336 21.43563575346668 32-33 21.55485761150485 27.60355507429369 29.24845871218174 21.593128602019718 34-35 21.679910058541655 27.653551311043117 29.215702375038106 21.45083625537712 36-37 21.728364615491262 27.65517661625695 29.117180319609894 21.499278448641896 38-39 21.604283247025446 27.711955832178365 29.127664029474797 21.556096891321396 40-41 21.849193667952743 27.59803676080073 29.002611413149847 21.550158158096675 42-43 21.789158023014682 27.735528040779773 28.75456521010456 21.72074872610099 44-45 21.835471128076613 27.887794058275194 28.532317011761947 21.744417801886247 46-47 21.954367739326468 27.863593563539133 28.215322665189497 21.9667160319449 48-49 21.91702136793758 28.033197780720194 28.101705699857664 21.94807515148456 50-51 21.904936680486916 28.07322375226126 28.041602227910033 21.980237339341787 52-53 22.05555697876714 28.00975000274915 27.947468625710243 21.98722439277347 54-55 22.03103532169348 27.98542260632246 27.94206759775647 22.04147447422759 56-57 22.06291166977688 28.101862526740245 27.844913563414085 21.990312240068782 58-59 21.928508862230505 28.183213397531926 27.94902016277203 21.939257577465543 60-61 22.07801212122757 28.15016659439133 27.852676837469065 21.919144446912036 62-63 22.064925544292404 28.219892104925403 27.819263044023007 21.895919306759186 64-65 22.03099172439522 28.177157236100946 27.787900845038067 22.003950194465766 66-67 22.095816952880845 28.150466982872864 27.645932517209857 22.107783547036433 68-69 22.01689162644321 28.078322279894678 27.804041405413184 22.100744688248927 70-71 21.979834579125658 27.95018782928557 27.82853468441107 22.241442907177703 72-73 22.11345867272572 27.96593942006324 27.75087943590076 22.169722471310283 74-75 21.993972187384013 28.040716530878314 27.73122603116651 22.234085250571162 76-77 22.080926035109893 27.9638244802464 27.687644318156103 22.267605166487606 78-79 22.00992429324066 27.970483296311404 27.722649837699 22.296942572748936 80-81 22.06125118051592 27.935229666333093 27.761013811858536 22.24250534129245 82-83 22.073444459146803 27.926505146488502 27.82634994624361 22.17370044812109 84-85 22.18226020181537 27.865450003575802 27.76111377322077 22.191176021388053 86-87 22.04797760765259 27.886168195828443 27.82655592819994 22.239298268319025 88-89 22.11013873515998 27.787171351065084 27.829888257189197 22.27280165658575 90-91 22.14837699229747 27.826242646600598 27.82590023429372 22.19948012680821 92-93 22.175998353550312 27.716618774168687 27.89467983207451 22.21270304020649 94-95 21.966713042059325 27.773825220159736 27.97420597825171 22.285255759529228 96-97 21.972201064667463 27.826673449955706 27.958011183416854 22.24311430195998 98-99 22.24543126541934 28.415694787982787 27.983506129026324 21.355367817571548 100-101 22.489994584647423 31.231897696722875 25.227340244472945 21.050767474156757 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2272.0 1 1924.5 2 2463.0 3 3558.5 4 4754.5 5 7091.0 6 9093.5 7 11320.5 8 13359.0 9 13770.5 10 12813.0 11 11721.5 12 12715.0 13 17054.5 14 28095.5 15 43032.5 16 54428.0 17 60199.0 18 60741.0 19 57558.0 20 52979.5 21 48848.5 22 46870.0 23 49789.5 24 57546.5 25 69736.0 26 85333.5 27 102730.5 28 122532.5 29 143145.5 30 162733.0 31 182406.0 32 203219.5 33 223483.0 34 242252.5 35 259149.5 36 277593.0 37 295502.5 38 309137.0 39 319343.0 40 327367.5 41 335326.0 42 340649.0 43 344834.5 44 350210.5 45 354847.0 46 358980.5 47 361473.0 48 360596.5 49 356010.0 50 347979.0 51 337284.5 52 321042.5 53 301649.5 54 284039.5 55 264855.5 56 242668.0 57 219234.0 58 194657.0 59 168028.0 60 140522.0 61 115428.5 62 91787.0 63 70666.0 64 53840.5 65 40291.0 66 30310.0 67 22876.0 68 16829.5 69 12102.5 70 8481.0 71 6026.5 72 4120.0 73 2699.5 74 1832.5 75 1212.0 76 803.0 77 503.5 78 332.0 79 218.0 80 147.5 81 105.0 82 76.0 83 52.5 84 37.5 85 29.5 86 20.5 87 13.0 88 10.0 89 7.5 90 7.0 91 7.0 92 5.5 93 3.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 4.537171629292661E-5 2 0.022583771784804217 3 3.4028787219694955E-5 4 3.4028787219694955E-5 5 4.537171629292661E-5 6 4.537171629292661E-5 7 3.4028787219694955E-5 8 0.0 9 0.0 10-11 3.970025175631078E-4 12-13 0.0016560676446918212 14-15 2.835732268307913E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008147080446065137 26-27 0.026698808157030764 28-29 0.32836339336555553 30-31 0.31426686975993245 32-33 0.31589804544317823 34-35 0.167751386557103 36-37 0.027261446979959334 38-39 0.025681237274184462 40-41 0.010061452209526893 42-43 0.007336144975350085 44-45 0.0022471576560276958 46-47 0.001804993736313127 48-49 0.0016544032516148696 50-51 0.0019313737221556225 52-53 2.027304473855513E-4 54-55 6.19533891198821E-5 56-57 2.938480166790635E-4 58-59 3.4082715468402544E-4 60-61 0.0021921091843703383 62-63 0.001190170606131373 64-65 0.0013903909045045093 66-67 0.006580536938977211 68-69 0.00997502855866615 70-71 0.013954615935795337 72-73 0.013476778763366707 74-75 0.010714017545181788 76-77 0.005122411759169464 78-79 0.001966224752971949 80-81 0.0019621559828695255 82-83 3.0236527395301703E-4 84-85 4.374071466641472E-5 86-87 0.0 88-89 7.342968006688394E-4 90-91 0.0024729166172083343 92-93 0.014721487329734937 94-95 3.701407314437623E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 172.0 20-21 612.0 22-23 1378.0 24-25 3483.0 26-27 5036.0 28-29 8196.0 30-31 18531.0 32-33 24168.0 34-35 34922.0 36-37 48806.0 38-39 58544.0 40-41 62023.0 42-43 73628.0 44-45 88424.0 46-47 87383.0 48-49 76798.0 50-51 68407.0 52-53 67242.0 54-55 72048.0 56-57 75496.0 58-59 75505.0 60-61 74860.0 62-63 75121.0 64-65 80421.0 66-67 85196.0 68-69 83484.0 70-71 81856.0 72-73 79488.0 74-75 80938.0 76-77 82348.0 78-79 86215.0 80-81 88433.0 82-83 86354.0 84-85 88639.0 86-87 94174.0 88-89 100255.0 90-91 107089.0 92-93 110867.0 94-95 126042.0 96-97 188462.0 98-99 758380.0 100-101 5306641.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.50336666510194 #Duplication Level Percentage of deduplicated Percentage of total 1 89.7995445341405 76.78163382661765 2 7.175150696192609 12.26999081707836 3 1.7414092702093487 4.466890660341525 4 0.5972717170383083 2.042749704824859 5 0.27032690822910516 1.1556930376878267 6 0.15294377965153735 0.7846324842415172 7 0.08005935601895321 0.47917411308623437 8 0.045003145963341484 0.3078336392309351 9 0.03356191992298929 0.25826914306441284 >10 0.10267725274416785 1.3121449353313637 >50 0.0018533906930491718 0.10337266622914458 >100 1.9802919615374257E-4 0.03761497226619445 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.1342929073231652E-5 0.0 4 0.0 1.1342929073231652E-5 0.0 1.1342929073231652E-5 0.0 5 0.0 1.1342929073231652E-5 0.0 1.1342929073231652E-5 0.0 6 0.0 1.1342929073231652E-5 0.0 1.1342929073231652E-5 0.0 7 0.0 1.1342929073231652E-5 0.0 1.1342929073231652E-5 0.0 8 0.0 2.2685858146463304E-5 0.0 1.1342929073231652E-5 0.0 9 0.0 4.537171629292661E-5 0.0 1.1342929073231652E-5 2.2685858146463304E-5 10-11 0.0 4.537171629292661E-5 0.0 2.2685858146463304E-5 2.2685858146463304E-5 12-13 0.0 4.537171629292661E-5 0.0 2.2685858146463304E-5 2.2685858146463304E-5 14-15 0.0 7.372903897600574E-5 0.0 2.835732268307913E-5 3.4028787219694955E-5 16-17 0.0 7.940050351262156E-5 0.0 3.4028787219694955E-5 3.4028787219694955E-5 18-19 0.0 1.1342929073231652E-4 0.0 3.970025175631078E-5 3.4028787219694955E-5 20-21 0.0 1.4745807795201146E-4 0.0 4.537171629292661E-5 3.4028787219694955E-5 22-23 0.0 1.4745807795201146E-4 0.0 6.238610990277408E-5 3.4028787219694955E-5 24-25 0.0 1.4745807795201146E-4 0.0 7.372903897600574E-5 3.4028787219694955E-5 26-27 0.0 1.6447247156185893E-4 0.0 9.641489712246905E-5 3.4028787219694955E-5 28-29 0.0 1.758154006350906E-4 0.0 3.7431665941664447E-4 3.4028787219694955E-5 30-31 0.0 2.211871169280172E-4 0.0 0.0011342929073231652 3.4028787219694955E-5 32-33 0.0 2.3820151053786467E-4 0.0 0.0026769312612826696 4.537171629292661E-5 34-35 0.0 2.835732268307913E-4 0.0 0.004707315565391135 5.671464536615826E-5 36-37 0.0 3.6297373034341286E-4 0.0 0.00786632131228615 5.671464536615826E-5 38-39 0.0 3.8565958848987614E-4 0.0 0.0125793083422139 5.671464536615826E-5 40-41 0.0 4.1968837570957113E-4 0.0 0.017711983747851226 5.671464536615826E-5 42-43 0.0 4.3103130478280274E-4 0.0 0.02341180560715013 5.671464536615826E-5 44-45 0.0 4.6506009200249774E-4 0.0 0.029463258267719214 5.671464536615826E-5 46-47 0.0 4.87745950148961E-4 0.0 0.0364108023250736 5.671464536615826E-5 48-49 0.0 4.934174146855768E-4 0.0 0.0437213201127714 5.671464536615826E-5 50-51 0.0 5.501320600517351E-4 0.0 0.05046469144680762 5.671464536615826E-5 52-53 0.0 5.671464536615826E-4 0.0 0.057054933238355206 5.671464536615826E-5 54-55 0.0 5.671464536615826E-4 0.0 0.0637132326043422 5.671464536615826E-5 56-57 0.0 5.671464536615826E-4 0.0 0.06963991304510572 5.671464536615826E-5 58-59 0.0 5.728179181981985E-4 0.0 0.07538510662069756 5.671464536615826E-5 60-61 0.0 5.784893827348142E-4 0.0 0.0813117870614611 5.671464536615826E-5 62-63 0.0 5.784893827348142E-4 0.0 0.08740293997378648 5.671464536615826E-5 64-65 0.0 6.465469571742042E-4 0.0 0.09314813354937833 5.671464536615826E-5 66-67 0.0 6.578898862474358E-4 0.0 0.09914287156458125 5.671464536615826E-5 68-69 0.0 6.635613507840516E-4 0.0 0.10504119468266171 5.671464536615826E-5 70-71 0.0 6.692328153206674E-4 0.0 0.1105595296767889 6.238610990277408E-5 72-73 0.0 6.692328153206674E-4 0.0 0.11512505862876465 7.940050351262156E-5 74-75 0.0 6.805757443938991E-4 0.0 0.11899299744273664 7.940050351262156E-5 76-77 0.0 7.089330670769782E-4 0.0 0.1226681064624637 7.940050351262156E-5 78-79 0.0 7.14604531613594E-4 0.0 0.12581009781574887 8.507196804923738E-5 80-81 0.0 7.14604531613594E-4 0.0 0.1271825922336099 9.074343258585321E-5 82-83 0.0 7.14604531613594E-4 0.0 0.12785182504893056 9.074343258585321E-5 84-85 0.0 7.14604531613594E-4 0.0 0.1282941992827866 9.074343258585321E-5 86-87 0.0 7.14604531613594E-4 0.0 0.12842464296712877 9.074343258585321E-5 88-89 0.0 7.259474606868257E-4 0.0 0.12845867175434844 9.074343258585321E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11795 0.0 50.07561 1 GTATCAA 21175 0.0 37.157795 1 TCAACGC 26830 0.0 28.831198 4 ATCAACG 26875 0.0 28.81445 3 CAACGCA 27375 0.0 28.257368 5 TATCAAC 27820 0.0 27.947332 2 AACGCAG 28195 0.0 27.52586 6 ACGCAGA 32670 0.0 23.730356 7 CGCAGAG 33720 0.0 23.01655 8 GTACATG 25890 0.0 21.209694 1 TACATGG 26180 0.0 20.343565 2 GCAGAGT 38070 0.0 20.175173 9 ACATGGG 26505 0.0 19.54705 3 GAGTACT 23895 0.0 19.35153 12-13 AGAGTAC 34815 0.0 18.75161 10-11 GTGGTAT 5740 0.0 18.749222 1 CAGAGTA 37395 0.0 17.973343 10-11 CATGGGG 19615 0.0 17.428812 4 GTACTTT 26545 0.0 17.33986 14-15 AGTACTT 26165 0.0 17.211199 12-13 >>END_MODULE