##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139063_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 28619607 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.004788116063228 28.0 18.0 32.0 18.0 33.0 2 29.5734699990814 32.0 27.0 33.0 25.0 33.0 3 31.56155372783421 33.0 32.0 33.0 27.0 33.0 4 31.177051313108528 33.0 31.0 33.0 28.0 33.0 5 32.3818418261299 33.0 33.0 33.0 32.0 34.0 6 35.89946231616668 38.0 36.0 38.0 31.0 38.0 7 36.721629650609806 38.0 37.0 38.0 34.0 38.0 8 36.91417988374194 38.0 38.0 38.0 35.0 38.0 9 36.987735191472055 38.0 38.0 38.0 35.0 38.0 10-11 37.08422591197706 38.0 38.0 38.0 36.0 38.0 12-13 37.11658699576133 38.0 38.0 38.0 36.0 38.0 14-15 37.12122007824915 38.0 38.0 38.0 36.0 38.0 16-17 37.092484865358216 38.0 38.0 38.0 36.0 38.0 18-19 37.11938797761968 38.0 38.0 38.0 36.0 38.0 20-21 37.139568368786136 38.0 38.0 38.0 36.0 38.0 22-23 37.13758720398497 38.0 38.0 38.0 36.0 38.0 24-25 37.13565643549627 38.0 38.0 38.0 36.0 38.0 26-27 37.10522862112309 38.0 38.0 38.0 36.0 38.0 28-29 37.07959303425141 38.0 38.0 38.0 36.0 38.0 30-31 37.07741315687795 38.0 38.0 38.0 36.0 38.0 32-33 37.063435309962074 38.0 38.0 38.0 36.0 38.0 34-35 37.034356300190815 38.0 38.0 38.0 36.0 38.0 36-37 37.01627507230839 38.0 38.0 38.0 36.0 38.0 38-39 36.97595185107036 38.0 38.0 38.0 36.0 38.0 40-41 36.97778386134628 38.0 38.0 38.0 36.0 38.0 42-43 36.95143680952724 38.0 38.0 38.0 36.0 38.0 44-45 36.89731917228013 38.0 38.0 38.0 35.0 38.0 46-47 36.870012785779195 38.0 38.0 38.0 35.0 38.0 48-49 36.83424070146842 38.0 38.0 38.0 35.0 38.0 50-51 36.782820878929755 38.0 38.0 38.0 35.0 38.0 52-53 36.748593529018464 38.0 38.0 38.0 35.0 38.0 54-55 36.706191355256486 38.0 38.0 38.0 35.0 38.0 56-57 36.696384773089584 38.0 38.0 38.0 35.0 38.0 58-59 36.668025055929675 38.0 38.0 38.0 34.0 38.0 60-61 36.66808200451993 38.0 38.0 38.0 34.0 38.0 62-63 36.642484700328524 38.0 38.0 38.0 34.0 38.0 64-65 36.62440974687001 38.0 38.0 38.0 34.0 38.0 66-67 36.604267578156055 38.0 38.0 38.0 34.0 38.0 68-69 36.59612157624025 38.0 38.0 38.0 34.0 38.0 70-71 36.565824365283184 38.0 38.0 38.0 34.0 38.0 72-73 36.537081111857574 38.0 38.0 38.0 34.0 38.0 74-75 36.54966116049836 38.0 38.0 38.0 34.0 38.0 76-77 36.517142588425756 38.0 38.0 38.0 34.0 38.0 78-79 36.4844413214761 38.0 38.0 38.0 34.0 38.0 80-81 36.47179869683012 38.0 38.0 38.0 34.0 38.0 82-83 36.40545774963883 38.0 38.0 38.0 34.0 38.0 84-85 36.397479727707044 38.0 37.5 38.0 34.0 38.0 86-87 36.373245743706704 38.0 37.0 38.0 34.0 38.0 88-89 36.33853908051485 38.0 37.0 38.0 34.0 38.0 90-91 36.30844160078611 38.0 37.0 38.0 34.0 38.0 92-93 36.305348091416505 38.0 37.0 38.0 33.5 38.0 94-95 36.24292575607748 38.0 37.0 38.0 33.0 38.0 96-97 36.20494361286613 38.0 37.0 38.0 33.0 38.0 98-99 36.23060168131768 38.0 37.0 38.0 33.0 38.0 100 34.27850002068845 38.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 39.0 18 125.0 19 311.0 20 599.0 21 1418.0 22 3981.0 23 10295.0 24 23878.0 25 46141.0 26 79831.0 27 127289.0 28 191454.0 29 271155.0 30 364814.0 31 474327.0 32 620192.0 33 837187.0 34 1226971.0 35 2099715.0 36 5500762.0 37 1.6739123E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.22688110287468 25.06189899812391 14.645001938705867 24.066217960295543 2 12.85399735543044 22.72486965316249 41.62189573888296 22.799237252524108 3 17.81588056048429 26.834012780119586 30.896724053548326 24.4533826058478 4 12.581448096055267 18.929106888155385 39.4871529857136 29.002292030075743 5 13.034789231888775 38.328203022363134 35.47372604537758 13.163281700370504 6 28.685232737436138 39.27873529984182 18.93452352042779 13.101508442294246 7 25.418420315834528 33.30748392177433 23.40966457016688 17.864431192224266 8 23.43814853921649 37.71256886930697 21.47927118635836 17.370011405118177 9 24.58422996514243 17.566935842270652 21.889434051278204 35.95940014130872 10-11 23.287687004227557 27.59282823135901 29.34270725660209 19.776777507811342 12-13 24.277880545319857 24.844984768658772 29.527445991833503 21.34968869418787 14-15 21.36371054990378 26.429639652284532 27.14336887994304 25.063280917868646 16-17 20.925706631820624 29.799355735387984 27.770961355269485 21.50397627752191 18-19 20.90017693115073 28.74803102642185 29.758736728984438 20.593055313442985 20-21 21.582095724922812 27.73563984818675 29.720630016818482 20.961634410071955 22-23 21.301151805918593 27.936574306267936 29.544653633042415 21.217620254771056 24-25 21.20092088615723 27.997118037287994 29.673685080487555 21.128275996067224 26-27 21.15885269222801 28.092478470312223 29.63263646513017 21.116032372329602 28-29 20.9243071784723 28.0301153061761 29.8336149470679 21.2119625682837 30-31 21.32620630507582 27.803037559036557 29.549108749721736 21.321647386165886 32-33 21.264056484847433 27.868352760314373 29.749129742366172 21.11846101247202 34-35 21.22905467413317 28.12609643206071 29.702631953197777 20.94221694060834 36-37 21.11740212370428 27.978100128681326 29.605993663827206 21.29850408378719 38-39 21.06723238695551 27.912118645492868 29.78023112045718 21.240417847094445 40-41 21.26780307358064 27.90384747488661 29.697950602176785 21.130398849355966 42-43 21.374710369723623 27.86571445982706 29.570630861341403 21.18894430910791 44-45 21.25651437237798 28.110991657826595 29.35029365759278 21.282200312202644 46-47 21.46920481730602 27.931043801579857 29.030288635244467 21.56946274586966 48-49 21.41237437992399 27.99406262216142 29.005476583524505 21.58808641439009 50-51 21.24158530862983 28.09917193903707 29.105641150334154 21.553601601998945 52-53 21.352225582277313 28.132666358625542 29.166147668206243 21.348960390890902 54-55 21.339512840790203 28.109631869098255 28.983557912591856 21.567297377519683 56-57 21.599833847822556 28.364998177373955 28.634060737475387 21.401107237328105 58-59 21.250200187485184 28.681951577562643 28.96455103789526 21.103297197056918 60-61 21.522091057586064 28.866310358229324 28.55239153844728 21.059207045737327 62-63 21.282803498127063 29.13025876984912 28.4437141162953 21.143223615728516 64-65 21.243440724629064 29.016083697047456 28.527155646133238 21.213319932190235 66-67 21.3381498476165 28.93292523585758 28.43491095990196 21.294013956623957 68-69 21.335531003176794 28.712340822353326 28.59584464851454 21.356283525955337 70-71 21.379706367951076 28.408667631326306 28.706577343845918 21.505048656876696 72-73 21.502707398228495 28.276773399001858 28.75998849033451 21.460530712435137 74-75 21.463626586850946 28.32517434076149 28.6731103679025 21.538088704485066 76-77 21.488926739038497 28.301596763701447 28.606461217177724 21.60301528008233 78-79 21.428420675652827 28.23583158744703 28.679879038695816 21.65586869820433 80-81 21.456060532039583 28.283427220460837 28.67735856698639 21.583153680513192 82-83 21.525615955317203 28.299612536583062 28.66863604750536 21.50613546059437 84-85 21.63612201078923 28.24854256476262 28.62196887669975 21.4933665477484 86-87 21.48026937657155 28.302096286418227 28.641674799494233 21.575959537515992 88-89 21.543998342135115 28.27961546398749 28.61141134231655 21.564974851560844 90-91 21.589563009862314 28.34086080047817 28.565934075180664 21.503642114478858 92-93 21.60043067313471 28.315509217165314 28.575283012229058 21.508777097470922 94-95 21.47029076835566 28.407140387468072 28.569876978329 21.552691865847265 96-97 21.563250511475612 28.56010687069347 28.583033427944365 21.293609189886553 98-99 22.567595527980664 30.386043670276376 28.912244777235248 18.134116024507716 100 21.470637447085863 31.363200962305438 22.88788678659614 24.278274804012554 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6182.0 1 6023.0 2 7176.0 3 9179.0 4 11878.5 5 16016.0 6 19778.0 7 26547.5 8 33413.5 9 36039.0 10 36222.0 11 36353.0 12 40714.5 13 52081.0 14 76719.0 15 106242.0 16 124516.0 17 129397.5 18 124405.0 19 114917.0 20 106441.0 21 103362.5 22 111427.0 23 133304.0 24 168164.0 25 216085.5 26 276281.0 27 343344.0 28 412082.5 29 489945.0 30 566166.5 31 636530.0 32 712366.0 33 781550.0 34 851534.0 35 919948.5 36 978967.0 37 1034274.5 38 1071833.5 39 1092916.5 40 1117980.5 41 1143449.0 42 1157680.0 43 1169253.5 44 1207654.0 45 1270321.0 46 1268591.0 47 1221802.5 48 1170966.0 49 1106425.0 50 1055219.5 51 998868.0 52 932451.0 53 867953.5 54 805115.5 55 733028.0 56 654047.0 57 574796.0 58 496498.5 59 419963.5 60 344667.5 61 274788.5 62 211695.0 63 158075.0 64 116756.0 65 85892.0 66 62178.5 67 46036.5 68 34679.0 69 25081.0 70 17802.0 71 12634.5 72 8819.5 73 5878.0 74 3858.0 75 2557.5 76 1642.5 77 980.0 78 568.0 79 350.5 80 229.5 81 145.5 82 106.0 83 71.0 84 42.5 85 28.5 86 21.5 87 18.5 88 10.0 89 4.0 90 2.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0033578378626932226 3 0.0 4 0.0 5 0.0028267334348791025 6 5.939983732131612E-5 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 5.241469155150824E-6 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 1.4017758818291718E-5 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 1.2713175202864591E-5 48-49 4.2277887171556633E-4 50-51 0.0016403985409078903 52-53 0.004220452781676311 54-55 0.0059570178936866145 56-57 0.006655499194127935 58-59 0.008293842386570008 60-61 0.007839959928415135 62-63 0.005720317359746086 64-65 0.0034471849317055307 66-67 0.001200509978202923 68-69 4.7995039801516215E-4 70-71 2.3150500525795766E-4 72-73 5.830658275064915E-4 74-75 1.0170474234568074E-5 76-77 2.830616871001651E-4 78-79 2.793355100673656E-4 80-81 1.0230074586221145E-4 82-83 8.425818806853081E-6 84-85 1.4448912629018963E-4 86-87 1.3506456954696578E-4 88-89 2.3804967373885557E-5 90-91 4.371118542352609E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 307.0 20-21 977.0 22-23 1866.0 24-25 2748.0 26-27 6376.0 28-29 15910.0 30-31 43485.0 32-33 55989.0 34-35 79870.0 36-37 127054.0 38-39 151904.0 40-41 153629.0 42-43 178897.0 44-45 214311.0 46-47 216359.0 48-49 196964.0 50-51 178283.0 52-53 173934.0 54-55 185474.0 56-57 193897.0 58-59 193170.0 60-61 195991.0 62-63 196507.0 64-65 223062.0 66-67 251165.0 68-69 252835.0 70-71 292679.0 72-73 205834.0 74-75 201842.0 76-77 210097.0 78-79 215063.0 80-81 214487.0 82-83 206157.0 84-85 207059.0 86-87 215784.0 88-89 224290.0 90-91 228200.0 92-93 227563.0 94-95 278867.0 96-97 868979.0 98-99 2021449.0 100-101 1.9310293E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 77.45803094918003 #Duplication Level Percentage of deduplicated Percentage of total 1 86.14565677331065 66.72672948484536 2 8.355434327425598 12.943909814551462 3 2.6375020299965937 6.12887141604004 4 1.1246276528981272 3.4844577417794738 5 0.6111739900658714 2.3670166918928053 6 0.3552490649925431 1.6510135842515803 7 0.22035551407333429 1.1947812960240363 8 0.1415052511077515 0.8768574495820568 9 0.09172643622311565 0.639445422224527 >10 0.31198970376206625 3.5966361819467254 >50 0.0038593180968067168 0.20342577182389682 >100 8.294505347582052E-4 0.1064781825714637 >500 5.0435860210424566E-5 0.025964192005671318 >1k 4.005165258571262E-5 0.0544127704609834 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0482324233173432E-5 0.0 1.7470540388622387E-5 0.0 3 0.0 1.7470540388622387E-5 0.0 2.4458756544071342E-5 0.0 4 0.0 8.036448578766298E-5 0.0 5.590572924359164E-5 3.4941080777244776E-6 5 0.0 9.434091809856089E-5 0.0 6.28939453990406E-5 3.4941080777244776E-6 6 8.036448578766298E-5 9.434091809856089E-5 0.0 7.337626963221403E-5 3.4941080777244776E-6 7 8.036448578766298E-5 9.783502617628537E-5 0.0 1.083173504094588E-4 3.4941080777244776E-6 8 8.385859386538746E-5 1.1181145848718328E-4 0.0 1.2928199887580566E-4 3.4941080777244776E-6 9 8.385859386538746E-5 1.7819951196394835E-4 0.0 1.6422307965305045E-4 3.4941080777244776E-6 10-11 8.735270194311194E-5 1.799465660028106E-4 0.0 1.8344067408053506E-4 3.4941080777244776E-6 12-13 9.434091809856089E-5 1.851877281193973E-4 0.0 2.0091121446915745E-4 3.4941080777244776E-6 14-15 9.434091809856089E-5 2.620581058293358E-4 0.0 2.393464033241267E-4 1.572348634976015E-5 16-17 1.991641604302952E-4 2.742874841013715E-4 0.0 2.568169437127491E-4 2.0964648466346864E-5 18-19 2.026582685080197E-4 2.917580244899939E-4 0.0 3.1796383507292747E-4 2.4458756544071342E-5 20-21 2.026582685080197E-4 3.197108891117897E-4 0.0 3.8085778047196805E-4 2.4458756544071342E-5 22-23 2.078994306246064E-4 3.598931320056212E-4 0.0 4.385105637544219E-4 3.6688134816107014E-5 24-25 2.1838175485777985E-4 4.053165370160394E-4 0.0 4.97910401075738E-4 5.2411621165867166E-5 26-27 2.2362291697436656E-4 4.2628118548238627E-4 0.0 5.520690762804675E-4 5.9399837321316115E-5 28-29 2.2362291697436656E-4 4.2977529356011076E-4 0.0 7.285215342055535E-4 5.9399837321316115E-5 30-31 2.3410524120754E-4 4.6821048241508E-4 0.0 0.0012473965837476383 6.28939453990406E-5 32-33 2.3759934928526446E-4 4.717045904928045E-4 0.0 0.0022746643585986348 7.16292155933518E-5 34-35 2.4633461947957567E-4 5.206221035809471E-4 0.0 0.0036967663462324973 8.211153982652522E-5 36-37 2.480816735184379E-4 5.870101570577122E-4 0.0 0.005929501407898438 8.385859386538746E-5 38-39 2.480816735184379E-4 6.167100757183703E-4 0.0 0.009344992053874115 8.385859386538746E-5 40-41 2.550698896738869E-4 6.568923186122018E-4 0.0 0.013057481886456373 8.385859386538746E-5 42-43 2.550698896738869E-4 6.743628590008241E-4 0.0 0.01645026082992684 8.385859386538746E-5 44-45 2.568169437127491E-4 7.617155609439361E-4 0.0 0.020536620226825616 9.259386405969865E-5 46-47 2.585639977516113E-4 8.368388846150123E-4 0.0 0.024851843702815346 9.958208021514762E-5 48-49 2.620581058293358E-4 8.578035330813593E-4 0.0 0.029402919474051478 1.0482324233173432E-4 50-51 2.8127570025682046E-4 9.591326673353691E-4 0.0 0.03385965432718905 1.0482324233173432E-4 52-53 2.900109704511316E-4 9.643738294519558E-4 0.0 0.037963484264476446 1.222937827203567E-4 54-55 2.935050785288561E-4 9.888325859960271E-4 0.0 0.0423887721449145 1.484995933032903E-4 56-57 3.0049329468430505E-4 0.001009797234462374 0.0 0.0467791189445753 1.5024664734215252E-4 58-59 3.0049329468430505E-4 0.0010272677748509964 0.0 0.051462970822764964 1.5024664734215252E-4 60-61 3.1796383507292747E-4 0.0010587147475505168 0.0 0.05611712278229397 1.5374075541987702E-4 62-63 3.4941080777244776E-4 0.0010866676121723126 0.0 0.06047252850117753 1.6771718773077492E-4 64-65 3.5290491585017225E-4 0.001207214340853807 0.0 0.0649013104896933 1.6771718773077492E-4 66-67 3.6338724008334563E-4 0.0012299260433590161 0.0 0.06936852766706406 1.7121129580849938E-4 68-69 3.668813481610701E-4 0.0012631200700973988 0.0 0.07375887446672486 1.7470540388622388E-4 70-71 3.7212251027765684E-4 0.0012840847185637454 0.0 0.07782426921515728 1.834406740805351E-4 72-73 4.053165370160394E-4 0.001294567042796919 0.0 0.08058286754252077 2.026582685080197E-4 74-75 4.053165370160394E-4 0.0013260140154964391 0.0 0.08291343763036299 2.026582685080197E-4 76-77 4.070635910549016E-4 0.0013784256366623064 3.4941080777244776E-6 0.0852125607455057 2.0440532254688195E-4 78-79 4.2278707740466177E-4 0.001397643231089791 3.4941080777244776E-6 0.08683207983953098 2.0615237658574417E-4 80-81 4.2628118548238627E-4 0.0014168608255172757 3.4941080777244776E-6 0.08747324867179343 2.0964648466346867E-4 82-83 4.31522347598973E-4 0.0014203549335950001 3.4941080777244776E-6 0.08801658247787958 2.166347008189176E-4 84-85 4.367635097155597E-4 0.0014325843118670359 3.4941080777244776E-6 0.08834328158314683 2.1838175485777982E-4 86-87 4.367635097155597E-4 0.001450054852255658 3.4941080777244776E-6 0.0885109987708776 2.2362291697436656E-4 88 4.472458339487331E-4 0.0015269252299655966 3.4941080777244776E-6 0.08851623993299419 2.2362291697436656E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 33320 0.0 44.602417 1 GTATCAA 62360 0.0 36.480385 1 CTTATAC 26170 0.0 35.739803 1 ATCAACG 75720 0.0 31.181276 3 TCAACGC 76330 0.0 30.937737 4 CAACGCA 77705 0.0 30.3681 5 TATCAAC 80200 0.0 29.692995 2 AACGCAG 81250 0.0 29.148445 6 TATACAC 41700 0.0 26.294415 3 CGCAGAG 94605 0.0 24.983522 8 ACGCAGA 94740 0.0 24.961569 7 TTATACA 40985 0.0 24.461376 2 GCAGAGT 111580 0.0 21.132488 9 ACATCTC 47090 0.0 20.657284 8 ACACATC 48555 0.0 19.750002 6 TACACAT 56130 0.0 19.250488 5 AGAGTAC 102115 0.0 18.94445 10-11 GAGTACT 69855 0.0 18.484795 12-13 ATCTCCG 31890 0.0 18.042515 7 TATGCCG 30795 0.0 17.965027 42-43 >>END_MODULE