##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139060_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10668104 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.47399669144583 34.0 31.0 34.0 31.0 34.0 2 32.61436390196421 34.0 31.0 34.0 31.0 34.0 3 32.673899035854916 34.0 31.0 34.0 31.0 34.0 4 36.195448975750516 37.0 35.0 37.0 35.0 37.0 5 36.11276014931988 37.0 35.0 37.0 35.0 37.0 6 36.14779833417447 37.0 36.0 37.0 35.0 37.0 7 36.099372484557705 37.0 36.0 37.0 35.0 37.0 8 36.07408214243131 37.0 36.0 37.0 35.0 37.0 9 37.78913432040033 39.0 38.0 39.0 35.0 39.0 10-11 37.71709110634842 39.0 37.5 39.0 35.0 39.0 12-13 37.661228087015274 39.0 37.0 39.0 35.0 39.0 14-15 39.00334234649381 40.0 38.0 41.0 35.5 41.0 16-17 38.972060030535886 40.0 38.0 41.0 35.0 41.0 18-19 38.97012505689858 40.0 38.0 41.0 35.0 41.0 20-21 38.94556152067254 40.0 38.0 41.0 35.0 41.0 22-23 38.843062916865144 40.0 38.0 41.0 35.0 41.0 24-25 38.71419686676184 40.0 38.0 41.0 34.0 41.0 26-27 38.640686602646426 40.0 38.0 41.0 34.5 41.0 28-29 38.58584857797503 40.0 38.0 41.0 34.0 41.0 30-31 38.50970710772745 40.0 38.0 41.0 34.0 41.0 32-33 38.401521133737106 40.0 38.0 41.0 34.0 41.0 34-35 38.289973798521615 40.0 38.0 41.0 34.0 41.0 36-37 38.42262283992318 40.0 38.0 41.0 34.0 41.0 38-39 38.47822141035111 40.0 38.0 41.0 34.0 41.0 40-41 38.419705694122854 40.0 38.0 41.0 34.0 41.0 42-43 38.38778383645829 40.0 38.0 41.0 34.0 41.0 44-45 38.35968183881907 40.0 38.0 41.0 34.0 41.0 46-47 38.26764923378959 40.0 38.0 41.0 33.0 41.0 48-49 38.19796207058164 40.0 38.0 41.0 33.0 41.0 50-51 38.123598991515976 40.0 37.5 41.0 33.0 41.0 52-53 38.05314245226441 40.0 37.0 41.0 33.0 41.0 54-55 37.93792511034698 40.0 37.0 41.0 33.0 41.0 56-57 37.78164990812422 40.0 37.0 41.0 33.0 41.0 58-59 37.64964597762058 39.5 36.0 41.0 33.0 41.0 60-61 37.50213133408053 39.0 36.0 41.0 32.5 41.0 62-63 37.28973352670149 39.0 35.5 41.0 32.0 41.0 64-65 36.974310954698076 38.5 35.0 40.0 31.5 41.0 66-67 36.68364864071975 38.0 35.0 40.0 31.0 41.0 68-69 36.410358698813454 37.5 35.0 40.0 31.0 41.0 70-71 36.10425184951912 37.0 35.0 39.5 31.0 41.0 72-73 35.79504601557801 36.5 34.5 39.0 31.0 41.0 74-75 35.469646185213094 36.0 34.0 39.0 30.0 40.0 76-77 34.49370655076335 35.0 33.5 37.0 29.5 39.0 78-79 34.80878730716914 35.0 34.0 37.0 30.0 39.0 80-81 34.64716412810134 35.0 34.0 37.0 30.0 39.0 82-83 34.403282032174 35.0 34.0 36.5 30.0 39.0 84-85 34.1391303430693 35.0 34.0 36.0 30.0 37.5 86-87 33.90579359691857 35.0 34.0 36.0 30.0 37.0 88-89 33.69469191379035 35.0 33.5 35.0 30.0 37.0 90-91 33.522336240197134 35.0 33.0 35.0 29.0 36.0 92-93 33.39020490928428 35.0 33.0 35.0 29.0 36.0 94-95 33.32851255623497 35.0 33.0 35.0 29.0 36.0 96-97 33.34696386708171 35.0 33.0 35.0 29.5 35.5 98-99 33.391687243967 35.0 33.0 35.0 30.0 35.0 100-101 31.916281644567917 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 11.0 20 61.0 21 342.0 22 1653.0 23 5584.0 24 14158.0 25 28699.0 26 50226.0 27 78204.0 28 111018.0 29 147851.0 30 188049.0 31 234360.0 32 292966.0 33 376113.0 34 511359.0 35 720716.0 36 1166737.0 37 2208888.0 38 2994230.0 39 1464653.0 40 72226.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.12245362437412 21.798222064576798 15.8308542923841 24.248470018664985 2 13.475917067125359 21.673392597531933 41.98033769229659 22.87035264304612 3 16.82151767549323 26.72087748675866 31.517381157888973 24.940223679859137 4 11.788111551968372 19.08169436668409 38.97464816615961 30.155545915187925 5 12.622392882559074 38.19396586309995 36.10663150640451 13.077009747936467 6 29.218500307083623 38.83518570872575 18.738418748073695 13.207895236116935 7 25.730289093544645 33.16451545654223 23.215446718554674 17.88974873135845 8 23.835519413758995 37.58843183381039 21.19460965134948 17.381439101081128 9 24.860603158724363 17.185968565735767 21.597492862836734 36.35593541270314 10-11 23.56708523374862 27.347452859999045 29.189591400050784 19.895870506201547 12-13 24.482606327111768 24.76204233507077 29.351335848944828 21.40401548887264 14-15 21.536122358035197 26.323853109016014 27.0081688382807 25.131855694668086 16-17 21.050221295180474 29.59738675213515 27.693449557672107 21.658942395012275 18-19 21.04142404311019 28.546487735777603 29.638382790418994 20.773705430693216 20-21 21.79113496313855 27.55355375257676 29.63247101664166 21.022840267643033 22-23 21.438731882176185 27.75511484051403 29.482011597582236 21.324141679727557 24-25 21.379711487717795 27.98578046274217 29.532261811849253 21.10224623769078 26-27 21.431097829223667 28.13618861802319 29.382447750539303 21.05026580221384 28-29 21.111417900988442 28.195347889362026 29.470821049443625 21.222413160205907 30-31 21.707930622220424 27.89405972298773 29.42071154671515 20.977298108076695 32-33 21.101807836426435 28.19002591637765 29.424629211411368 21.28353703578455 34-35 21.306687368023177 28.19855443640765 29.554035156487952 20.94072303908122 36-37 21.260304273679857 28.226201703485316 29.351553656060087 21.161940366774736 38-39 21.18407668919085 27.958621704516943 29.520023540978386 21.337278065313818 40-41 21.436022900441042 27.873293310660642 29.420805200388457 21.269878588509858 42-43 21.481031274096203 27.934258305521038 29.270818638070413 21.313891782312346 44-45 21.420125919831168 28.16068944808108 28.997070796736562 21.42211383535119 46-47 21.648868685744375 28.02071266816975 28.585172832002993 21.74524581408288 48-49 21.59795393645008 28.104450727641805 28.573021572656792 21.724573763251325 50-51 21.421345659150056 28.252595296958226 28.560860923898318 21.765198119993396 52-53 21.525045700720575 28.28865140871673 28.594921056519002 21.59138183404369 54-55 21.57875702644875 28.298027261911667 28.366725965154988 21.756489746484593 56-57 21.7579342299439 28.44659083092272 28.135818818644697 21.659656120488684 58-59 21.45290875289462 28.725036899442486 28.439745061221235 21.38230928644166 60-61 21.767452356790766 28.780359034305807 28.071355937261373 21.380832671642054 62-63 21.550491189366756 28.902186765361705 28.020218438544298 21.527103606727245 64-65 21.509340240373177 28.825685948890634 28.07812874490267 21.586845065833522 66-67 21.64165785093896 28.706345302508605 27.99114339426854 21.66085345228389 68-69 21.64962887526588 28.527173387689686 28.09659116775418 21.726606569290254 70-71 21.624864387666932 28.32053808152982 28.188594966978137 21.86600256382512 72-73 21.72097984558372 28.30006053107435 28.211659234143642 21.767300389198283 74-75 21.609215435291134 28.396678410533728 28.168970323222105 21.82513583095304 76-77 21.65499760989069 28.369794489190536 28.09096637428618 21.884241526632593 78-79 21.60800296958498 28.337613322806977 28.134340345152893 21.920043362455154 80-81 21.621288743456862 28.352170491795675 28.16229123864827 21.86424952609919 82-83 21.64625965803918 28.327268873464973 28.285803650851566 21.74066781764428 84-85 21.81857859370288 28.297901822141164 28.17043000177713 21.713089582378828 86-87 21.663938071372176 28.350391256072704 28.184028184652504 21.801642487902615 88-89 21.742093606695917 28.211218457824156 28.193809294073308 21.85287864140662 90-91 21.77592515720986 28.2256196982703 28.226180903255106 21.772274241264736 92-93 21.768894065558754 28.13047738494548 28.308089969163795 21.79253858033197 94-95 21.580372435098244 28.189570673603086 28.377291646117442 21.85276524518123 96-97 21.55084604830998 28.263151945703243 28.38328378996383 21.80271821602295 98-99 21.772723967368762 28.817651840568264 28.42471796089836 20.98490623116461 100-101 21.947426393635652 31.666188838545352 25.80754170470253 20.578843063116466 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2001.0 1 1851.0 2 2634.5 3 3827.0 4 5321.0 5 8297.0 6 10860.0 7 13424.5 8 15558.5 9 15818.0 10 14428.0 11 12960.0 12 14288.5 13 19993.5 14 34068.0 15 52703.0 16 66772.5 17 73825.5 18 74055.5 19 69615.5 20 63990.0 21 58855.5 22 56275.0 23 60145.0 24 70100.0 25 85268.0 26 104274.0 27 125168.0 28 149159.5 29 175636.0 30 202567.0 31 229437.5 32 256621.0 33 284704.0 34 310643.0 35 332514.0 36 355743.5 37 377836.5 38 394079.0 39 404631.0 40 413999.0 41 422862.0 42 427054.0 43 430944.0 44 436354.0 45 445176.5 46 455411.5 47 458459.5 48 445967.0 49 429006.5 50 414702.0 51 393083.0 52 366849.5 53 340630.5 54 315202.0 55 288100.5 56 261303.0 57 232972.0 58 201907.0 59 171847.0 60 141599.5 61 113917.0 62 89572.5 63 67404.0 64 49565.5 65 37353.0 66 28173.5 67 21100.0 68 15888.5 69 11074.0 70 7631.5 71 5566.0 72 3941.0 73 2561.5 74 1630.5 75 1061.5 76 713.0 77 472.5 78 321.0 79 212.0 80 148.5 81 103.5 82 76.0 83 52.0 84 35.0 85 24.5 86 18.0 87 14.5 88 9.0 89 6.5 90 6.5 91 5.5 92 4.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.022665695797491288 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 3.843232124471227E-4 12-13 0.001757575666678915 14-15 1.8747473777908427E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008378349968601113 26-27 0.026894123221330613 28-29 0.32799829057366164 30-31 0.3130882209084633 32-33 0.31547969160985606 34-35 0.1692751687510824 36-37 0.031218017532152424 38-39 0.029922724337962704 40-41 0.012108974630834593 42-43 0.009516793275443533 44-45 0.0036200190267810274 46-47 0.002233954804141949 48-49 0.0020165782600744227 50-51 0.0020585345037429266 52-53 5.450595974724779E-4 54-55 1.068012457297302E-4 56-57 4.360145561151247E-4 58-59 9.784533696303294E-4 60-61 0.003376066354859589 62-63 0.0033929840688052843 64-65 0.00321438252271457 66-67 0.006904764805168666 68-69 0.01060859133443813 70-71 0.014498472923000109 72-73 0.013891451077502613 74-75 0.010690933756716033 76-77 0.005056345049072084 78-79 0.002001321675128033 80-81 0.0020874974558624756 82-83 2.991117436900912E-4 84-85 3.5590072125653834E-5 86-87 0.0 88-89 6.62796462320842E-4 90-91 0.0024544406782963987 92-93 0.014516563975649748 94-95 4.139013809278319E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 236.0 20-21 807.0 22-23 1689.0 24-25 3921.0 26-27 5679.0 28-29 9270.0 30-31 20665.0 32-33 26753.0 34-35 39715.0 36-37 54382.0 38-39 66007.0 40-41 69456.0 42-43 83113.0 44-45 99767.0 46-47 97770.0 48-49 86320.0 50-51 77137.0 52-53 74466.0 54-55 81149.0 56-57 89285.0 58-59 90196.0 60-61 92431.0 62-63 93924.0 64-65 99831.0 66-67 107089.0 68-69 97404.0 70-71 90305.0 72-73 87310.0 74-75 89181.0 76-77 89894.0 78-79 95537.0 80-81 98181.0 82-83 95700.0 84-85 98790.0 86-87 104528.0 88-89 112527.0 90-91 122909.0 92-93 127366.0 94-95 145396.0 96-97 224128.0 98-99 928323.0 100-101 6589567.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.67272841912458 #Duplication Level Percentage of deduplicated Percentage of total 1 88.35696747077552 73.0471157564885 2 7.723735398682371 12.77084557992893 3 2.074366333689861 5.144805736407511 4 0.8371183823715649 2.7682744272184507 5 0.4062703734672335 1.6793740125196455 6 0.1964873116364013 0.974648529163206 7 0.12278731686715788 0.7105813750470077 8 0.08241911598522042 0.5451050553912364 9 0.046956500189384354 0.34938197889025896 >10 0.15095936812981692 1.8413785696792018 >50 0.0015276920460821272 0.08634015207129096 >100 3.657345139776981E-4 0.057869387138083546 >500 3.900164541321719E-5 0.024279440056722074 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.686868444477107E-5 0.0 0.0 0.0 3 0.0 4.686868444477107E-5 0.0 9.373736888954214E-6 0.0 4 0.0 1.2185857955640478E-4 0.0 1.8747473777908427E-5 0.0 5 0.0 1.31232316445359E-4 0.0 1.8747473777908427E-5 0.0 6 0.0 1.31232316445359E-4 0.0 2.812121066686264E-5 9.373736888954214E-6 7 0.0 1.31232316445359E-4 0.0 3.7494947555816855E-5 9.373736888954214E-6 8 0.0 1.4997979022326742E-4 0.0 3.7494947555816855E-5 9.373736888954214E-6 9 0.0 2.4371715911280955E-4 0.0 6.56161582226795E-5 9.373736888954214E-6 10-11 0.0 2.4371715911280955E-4 0.0 7.967676355611082E-5 9.373736888954214E-6 12-13 0.0 2.4371715911280955E-4 0.0 9.842423733401925E-5 9.373736888954214E-6 14-15 0.0 3.2808079111339746E-4 0.0 1.0311110577849635E-4 1.8747473777908427E-5 16-17 0.0 3.2808079111339746E-4 0.0 1.4997979022326742E-4 1.8747473777908427E-5 18-19 0.0 3.421413964468288E-4 0.0 2.155959484459469E-4 1.8747473777908427E-5 20-21 0.0 3.7026260711369146E-4 0.0 2.858989751131035E-4 1.8747473777908427E-5 22-23 0.0 4.5931310755875643E-4 0.0 3.233939226689204E-4 2.812121066686264E-5 24-25 0.0 5.061817920035275E-4 0.0 3.8901008089159986E-4 3.7494947555816855E-5 26-27 0.0 5.155555288924818E-4 0.0 5.530504764482986E-4 4.686868444477107E-5 28-29 0.0 5.29616134225913E-4 0.0 8.717575306727418E-4 4.686868444477107E-5 30-31 0.0 5.717979502262069E-4 0.0 0.0018185049564571174 4.686868444477107E-5 32-33 0.0 5.811716871151612E-4 0.0 0.003707312939581391 4.686868444477107E-5 34-35 0.0 6.655353191157491E-4 0.0 0.005957009792930403 5.624242133372528E-5 36-37 0.0 7.545858195608142E-4 0.0 0.009687757074734179 5.624242133372528E-5 38-39 0.0 7.686464248942455E-4 0.0 0.01555102949877504 5.624242133372528E-5 40-41 0.0 8.436363200058793E-4 0.0 0.021897049372597042 5.624242133372528E-5 42-43 0.0 8.623837937837876E-4 0.0 0.028271190457085905 5.624242133372528E-5 44-45 0.0 9.373736888954214E-4 0.0 0.035807674915805096 5.624242133372528E-5 46-47 0.0 9.983029786736239E-4 0.0 0.04364880582341529 6.092928977820239E-5 48-49 0.0 0.0010029898471181008 0.0 0.051424320572802815 6.56161582226795E-5 50-51 0.0 0.0011295352951189827 0.0 0.05940137066530285 6.56161582226795E-5 52-53 0.0 0.0011529696373413683 0.0 0.06721906723069067 8.436363200058792E-5 54-55 0.0 0.0011764039795637538 0.0 0.07537421832408082 1.0311110577849635E-4 56-57 0.0 0.0012092120586750935 0.0 0.08168743011879148 1.0311110577849635E-4 58-59 0.0 0.001232646400897479 0.0 0.08706795509305121 1.0311110577849635E-4 60-61 0.0 0.0012654544800088188 0.0 0.09222351038197603 1.0311110577849635E-4 62-63 0.0 0.0012888888222312043 0.0 0.0971259747748991 1.2185857955640478E-4 64-65 0.0 0.0014154342702320862 0.0 0.10251587348604776 1.2185857955640478E-4 66-67 0.0 0.0014341817440099948 0.0 0.10778860048608449 1.31232316445359E-4 68-69 0.0 0.0014576160862323803 0.0 0.11321130727634451 1.406060533343132E-4 70-71 0.0 0.0014763635600102886 0.0 0.11837154943371381 1.4997979022326742E-4 72-73 0.0 0.001495111033788197 0.0 0.1226506603235214 1.6872726400117585E-4 74-75 0.0 0.0015701009288998308 0.0 0.12622205407821296 1.6872726400117585E-4 76-77 0.0 0.0016544645609004186 0.0 0.12955441754223618 1.6872726400117585E-4 78-79 0.0 0.0016778989031228041 0.0 0.1323196699244777 1.6872726400117585E-4 80-81 9.373736888954214E-6 0.0016778989031228041 0.0 0.1334632658249301 1.7341413244565296E-4 82-83 9.373736888954214E-6 0.0016778989031228041 0.0 0.13402100316982285 1.7810100089013005E-4 84-85 9.373736888954214E-6 0.0016919595084562357 0.0 0.13439126577693655 1.7810100089013005E-4 86-87 9.373736888954214E-6 0.001752888798234438 0.0 0.13449437688271504 1.7810100089013005E-4 88-89 9.373736888954214E-6 0.0018700605093463656 0.0 0.13455999304093774 1.8747473777908427E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15330 0.0 46.80233 1 GTATCAA 26720 0.0 34.664955 1 CTTATAC 10015 0.0 34.28875 1 ATCAACG 32080 0.0 28.149939 3 TCAACGC 32390 0.0 27.880522 4 CAACGCA 32920 0.0 27.444723 5 AACGCAG 34235 0.0 26.539976 6 TATCAAC 34420 0.0 26.526434 2 TATACAC 15100 0.0 26.460733 3 TTATACA 15295 0.0 23.928267 2 ACGCAGA 38920 0.0 23.214539 7 CGCAGAG 39515 0.0 22.854204 8 ACATCTC 16860 0.0 20.566437 8 ACACATC 17260 0.0 20.286682 6 GCAGAGT 45715 0.0 19.624197 9 GAGTACT 28385 0.0 19.291782 12-13 GTACATG 29850 0.0 19.25463 1 TACACAT 20825 0.0 19.166048 5 TACATGG 29245 0.0 18.691433 2 AGAGTAC 41575 0.0 18.202255 10-11 >>END_MODULE