##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139058_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9988739 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45962047862098 34.0 31.0 34.0 31.0 34.0 2 32.59528465004441 34.0 31.0 34.0 31.0 34.0 3 32.65682785384622 34.0 31.0 34.0 31.0 34.0 4 36.182946916522695 37.0 35.0 37.0 35.0 37.0 5 36.10009091237643 37.0 35.0 37.0 35.0 37.0 6 36.134574444281704 37.0 36.0 37.0 35.0 37.0 7 36.08587149989603 37.0 36.0 37.0 35.0 37.0 8 36.05908403453129 37.0 35.0 37.0 35.0 37.0 9 37.77027881096903 39.0 38.0 39.0 35.0 39.0 10-11 37.70036082632653 39.0 37.5 39.0 35.0 39.0 12-13 37.6477972845221 39.0 37.0 39.0 35.0 39.0 14-15 38.990081981319165 40.0 38.0 41.0 35.0 41.0 16-17 38.96286448169283 40.0 38.0 41.0 35.0 41.0 18-19 38.9631797367015 40.0 38.0 41.0 35.0 41.0 20-21 38.935472046648826 40.0 38.0 41.0 35.0 41.0 22-23 38.83439945592528 40.0 38.0 41.0 35.0 41.0 24-25 38.710673414395615 40.0 38.0 41.0 34.0 41.0 26-27 38.641663912682965 40.0 38.0 41.0 34.5 41.0 28-29 38.583587773176774 40.0 38.0 41.0 34.0 41.0 30-31 38.5201071385667 40.0 38.0 41.0 34.0 41.0 32-33 38.4216433426197 40.0 38.0 41.0 34.0 41.0 34-35 38.309255778419704 40.0 38.0 41.0 34.0 41.0 36-37 38.449196470141615 40.0 38.0 41.0 34.0 41.0 38-39 38.51411251700212 40.0 38.0 41.0 34.0 41.0 40-41 38.45633436432314 40.0 38.0 41.0 34.0 41.0 42-43 38.427448064328665 40.0 38.0 41.0 34.0 41.0 44-45 38.40415693552755 40.0 38.0 41.0 34.0 41.0 46-47 38.31702734363721 40.0 38.0 41.0 33.0 41.0 48-49 38.24733122795331 40.0 38.0 41.0 33.0 41.0 50-51 38.18487509378308 40.0 38.0 41.0 33.0 41.0 52-53 38.11678480766661 40.0 37.0 41.0 33.0 41.0 54-55 38.00549591073022 40.0 37.0 41.0 33.0 41.0 56-57 37.85908865992744 40.0 37.0 41.0 33.0 41.0 58-59 37.740582778955144 40.0 36.5 41.0 33.0 41.0 60-61 37.602848211523735 39.0 36.0 41.0 33.0 41.0 62-63 37.39876227771211 39.0 36.0 41.0 32.0 41.0 64-65 37.087442998442 39.0 35.0 40.5 31.5 41.0 66-67 36.799944406302316 38.0 35.0 40.0 31.0 41.0 68-69 36.53021744670909 38.0 35.0 40.0 31.0 41.0 70-71 36.228918667583855 37.0 35.0 40.0 31.0 41.0 72-73 35.92002549774672 37.0 35.0 39.0 31.0 41.0 74-75 35.59350842490781 36.0 34.0 39.0 30.5 40.5 76-77 34.60285125350289 35.0 33.5 38.0 29.5 39.0 78-79 34.90905223740996 35.0 34.0 37.0 30.0 39.0 80-81 34.742754646407164 35.0 34.0 37.0 30.0 39.0 82-83 34.49064549208545 35.0 34.0 37.0 30.0 39.0 84-85 34.215352540648226 35.0 34.0 36.0 30.0 37.5 86-87 33.9737262215738 35.0 34.0 36.0 30.0 37.0 88-89 33.75624275297472 35.0 34.0 35.5 30.0 37.0 90-91 33.57856535385166 35.0 33.0 35.0 30.0 36.0 92-93 33.441206922086266 35.0 33.0 35.0 29.0 36.0 94-95 33.374895879692005 35.0 33.0 35.0 29.0 36.0 96-97 33.387179243956346 35.0 33.0 35.0 30.0 36.0 98-99 33.42707869333208 35.0 33.0 35.0 30.0 35.0 100-101 31.98024695270988 33.5 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 1.0 16 0.0 17 0.0 18 2.0 19 9.0 20 38.0 21 345.0 22 1432.0 23 4966.0 24 12501.0 25 25789.0 26 45117.0 27 71580.0 28 102074.0 29 136335.0 30 174842.0 31 217383.0 32 271768.0 33 347723.0 34 468821.0 35 656231.0 36 1050994.0 37 1986097.0 38 2834140.0 39 1503107.0 40 77442.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.96990791330117 22.12247211584966 15.652296050582562 24.255323920266612 2 13.287643565335976 22.060223215765394 42.01948614331715 22.632647075581477 3 16.69059527934407 27.01469124380965 31.847903924609504 24.446809552236772 4 11.606620215024138 19.309013880530866 39.73638714556462 29.347978758880377 5 12.344441075094664 38.46746821595799 36.458065427477884 12.730025281469462 6 28.645137289101257 39.41744798817949 19.160766939650742 12.776647783068512 7 25.133502837545358 33.4700306014603 23.859007628490442 17.537458932503895 8 23.439064730793348 37.87569181655462 21.657408407607807 17.027835045044224 9 24.706532025714157 17.373564370838 22.089895431245125 35.83000817220272 10-11 23.191721208691277 27.560095505878667 29.734246317928413 19.513936967501643 12-13 24.16732675566989 24.940266617223397 29.916943917396637 20.975462709710076 14-15 21.251105432825348 26.630235291567715 27.425130781081425 24.69352849452551 16-17 20.729883922284888 29.898183344263973 28.134307043161304 21.237625690289835 18-19 20.716894294665224 29.064289296176426 29.810214282303306 20.40860212685505 20-21 21.49305406233083 28.12192216658846 29.642282069806967 20.74274170127374 22-23 21.16824125559541 28.06007211923441 29.602714221599335 21.168972403570844 24-25 21.161987445532198 28.298992312794624 29.621094840697825 20.917925400975356 26-27 21.267358386876094 28.40932960999722 29.427658895434128 20.89565310769256 28-29 20.970421806234185 28.4986612780624 29.587196579635272 20.943720336068143 30-31 21.405325197824375 28.339282970098985 29.502422262138396 20.752969569938255 32-33 20.93291760172696 28.501349774335665 29.466919305275134 21.098813318662234 34-35 21.110440397095072 28.51065676559243 29.4526912931002 20.926211544212293 36-37 21.08829407308905 28.475879924484765 29.41422420069478 21.021601801731414 38-39 21.094201607803527 28.299455065765194 29.52062936152816 21.08571396490311 40-41 21.296881618318878 28.258706416544033 29.39496958318574 21.049442381951348 42-43 21.216288716228814 28.379990694178957 29.256353530946356 21.147367058645873 44-45 21.227567245598184 28.616907135028523 28.95041834170152 21.205107277671768 46-47 21.357034763689416 28.474298914841782 28.675041424271345 21.493624897197453 48-49 21.386693845880817 28.478239194270376 28.636602927745063 21.498464032103744 50-51 21.291126921513346 28.6376349133376 28.61730571794222 21.45393244720683 52-53 21.374618141459766 28.590456383738534 28.66982162650851 21.365103848293188 54-55 21.40913679199687 28.590510759329085 28.523999049863946 21.4763533988101 56-57 21.488088822828143 28.74185457410803 28.38077576346183 21.389280839602 58-59 21.30912997617648 28.906231940960943 28.526362360677865 21.258275722184713 60-61 21.529063900394487 28.906868022764293 28.30127621432713 21.262791862514085 62-63 21.395810422980983 28.97199591580113 28.299778333106783 21.332415328111097 64-65 21.379516515279924 28.92049584801678 28.358830072659778 21.341157564043513 66-67 21.47712373127016 28.8512831265139 28.25471039229529 21.41688274992065 68-69 21.448896757403215 28.768485706925212 28.32851436453076 21.454103171140815 70-71 21.440931380283526 28.604243549178747 28.366099791576673 21.588725278961057 72-73 21.51997692593609 28.579205863628605 28.360726775340094 21.540090435095212 74-75 21.43234303350215 28.651573115812667 28.304546423147386 21.611537427537797 76-77 21.465651539830972 28.636575672975095 28.27421663105994 21.62355615613399 78-79 21.46523033001245 28.605639583110264 28.27679722398122 21.652332862896063 80-81 21.421177075873928 28.60450670327462 28.353125653999665 21.621190566851787 82-83 21.480950772236405 28.573173367562738 28.404124534401287 21.54175132579957 84-85 21.610172085731914 28.540678837208926 28.33378928560496 21.5153597914542 86-87 21.475295162581155 28.506319404844742 28.374030472026394 21.64435496054771 88-89 21.542795688559575 28.466135500370353 28.355770104179108 21.63529870689096 90-91 21.556137340538527 28.507436533499504 28.391291632788267 21.5451344931737 92-93 21.548762817689195 28.388505397024254 28.47125956392407 21.591472221362476 94-95 21.429857241222557 28.440785238286708 28.517379742074823 21.611977778415913 96-97 21.38587618183621 28.449788315757147 28.576101344772418 21.58823415763423 98-99 21.60473489237134 29.053217773664226 28.605765082931043 20.736282251033394 100-101 21.77178658206663 31.869885433715222 26.006647465863686 20.351680518354467 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1386.0 1 1331.0 2 2104.0 3 3121.5 4 4374.5 5 6842.5 6 8749.5 7 10350.0 8 11560.5 9 11474.5 10 10503.0 11 9821.0 12 11378.5 13 16146.0 14 26996.0 15 41526.0 16 53152.0 17 59501.0 18 60489.0 19 57876.5 20 54204.0 21 51571.5 22 52167.5 23 58106.0 24 69721.5 25 87228.5 26 109096.5 27 133266.5 28 159315.0 29 186356.0 30 212182.0 31 237073.5 32 263022.5 33 287761.0 34 310424.0 35 331260.0 36 352769.0 37 372097.0 38 386869.0 39 398482.0 40 410075.0 41 421650.0 42 429457.5 43 435237.5 44 438975.5 45 443096.0 46 446248.0 47 437988.0 48 416606.0 49 393894.5 50 373084.5 51 349633.0 52 324625.0 53 300412.5 54 275299.0 55 248204.0 56 222283.5 57 196356.0 58 168839.5 59 142621.5 60 118070.0 61 94914.5 62 73916.5 63 55696.0 64 40636.5 65 29836.5 66 22120.0 67 16504.5 68 12488.0 69 8957.0 70 6370.0 71 4506.5 72 3062.0 73 2027.5 74 1334.5 75 889.0 76 586.5 77 387.0 78 263.0 79 183.5 80 121.5 81 78.5 82 55.5 83 38.0 84 26.0 85 20.0 86 15.0 87 10.0 88 7.0 89 5.0 90 4.0 91 3.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.02260545600400611 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 3.453889424881359E-4 12-13 0.0018721081810226497 14-15 4.5050731628887286E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008261143099731184 26-27 0.026843966487743644 28-29 0.3279938859275265 30-31 0.313267220907385 32-33 0.31538120425682575 34-35 0.1686833172577955 36-37 0.028921213380326837 38-39 0.027690729401977702 40-41 0.010443090090324254 42-43 0.007699919642438087 44-45 0.0024798280346282143 46-47 0.0019038611305760257 48-49 0.0017096791219897598 50-51 0.0018969256799565028 52-53 2.1130788691517088E-4 54-55 5.4643175419838545E-5 56-57 1.9304860649518103E-4 58-59 3.1748995339247484E-4 60-61 0.002222212970815199 62-63 0.0016138325910082247 64-65 0.0017456463493912319 66-67 0.006522002495203163 68-69 0.010070986943793905 70-71 0.01445697739007171 72-73 0.013929728334857453 74-75 0.01083259350079608 76-77 0.005335658345945913 78-79 0.002198527533079455 80-81 0.0020368069882093394 82-83 3.2459103597938884E-4 84-85 3.866731550422083E-5 86-87 0.0 88-89 6.223324942437555E-4 90-91 0.0024397899495440683 92-93 0.015575471665245404 94-95 3.754618441420339E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 808.0 20-21 2616.0 22-23 3751.0 24-25 4226.0 26-27 6661.0 28-29 11039.0 30-31 21049.0 32-33 27589.0 34-35 40343.0 36-37 55273.0 38-39 65152.0 40-41 68851.0 42-43 80882.0 44-45 95150.0 46-47 95387.0 48-49 85622.0 50-51 77286.0 52-53 76558.0 54-55 83324.0 56-57 88469.0 58-59 88880.0 60-61 89083.0 62-63 90000.0 64-65 95658.0 66-67 100764.0 68-69 96656.0 70-71 91446.0 72-73 89388.0 74-75 91111.0 76-77 90783.0 78-79 96846.0 80-81 97868.0 82-83 96927.0 84-85 99692.0 86-87 104066.0 88-89 111279.0 90-91 118909.0 92-93 123793.0 94-95 144035.0 96-97 207938.0 98-99 844704.0 100-101 6028877.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.78039072277065 #Duplication Level Percentage of deduplicated Percentage of total 1 89.33959850130888 75.74246067956423 2 7.361733205153731 12.482612350594561 3 1.8583237823945002 4.726482490824683 4 0.6945859856857524 2.355490850279955 5 0.29455060427489244 1.248605765902679 6 0.15652594524648844 0.7962198477748977 7 0.09869234737033673 0.5857023039983189 8 0.051878713046185715 0.35186380498000996 9 0.03828961038959453 0.2921587316507235 >10 0.10446486319626812 1.2837570464763355 >50 0.001013046421077122 0.056198327747428674 >100 3.0634728634470397E-4 0.05154546311279089 >500 3.704822601547131E-5 0.026902337093290207 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.003382108592486E-5 0.0 0.0 0.0 3 0.0 4.004509478123315E-5 0.0 1.0011273695308287E-5 0.0 4 0.0 7.007891586715801E-5 0.0 1.0011273695308287E-5 0.0 5 0.0 8.00901895624663E-5 0.0 1.0011273695308287E-5 0.0 6 0.0 8.00901895624663E-5 0.0 1.0011273695308287E-5 0.0 7 0.0 8.00901895624663E-5 0.0 2.0022547390616574E-5 0.0 8 0.0 9.010146325777459E-5 0.0 2.0022547390616574E-5 0.0 9 0.0 1.0011273695308286E-4 0.0 2.0022547390616574E-5 0.0 10-11 3.003382108592486E-5 1.0011273695308286E-4 0.0 4.5050731628887286E-5 0.0 12-13 3.003382108592486E-5 1.0011273695308286E-4 0.0 1.0011273695308286E-4 5.0056368476541436E-6 14-15 4.004509478123314E-5 1.4015783173431602E-4 0.0 2.202480212967823E-4 1.0011273695308287E-5 16-17 6.006764217184972E-5 1.4015783173431602E-4 0.0 3.5540021618344416E-4 1.0011273695308287E-5 18-19 7.508455271481215E-5 1.5517474227727844E-4 0.0 5.105749584607226E-4 2.0022547390616574E-5 20-21 8.00901895624663E-5 1.601803791249326E-4 0.0 7.808793482340464E-4 2.0022547390616574E-5 22-23 9.010146325777457E-5 1.8020292651554914E-4 0.0 0.001181330296046378 2.0022547390616574E-5 24-25 1.4516346858197017E-4 2.202480212967823E-4 0.0 0.0017519728966789501 2.5028184238270715E-5 26-27 1.6518601597258675E-4 2.4027056868739888E-4 0.0 0.0021223900234053567 3.003382108592486E-5 28-29 1.7019165282024088E-4 2.4527620553505306E-4 0.0 0.003073461024459644 3.003382108592486E-5 30-31 1.7019165282024088E-4 2.953325740115945E-4 0.0 0.004570146441908233 3.003382108592486E-5 32-33 1.7019165282024088E-4 3.003382108592486E-4 0.0 0.006812671749657289 4.5050731628887286E-5 34-35 1.7519728966789501E-4 3.3537766879282763E-4 0.0 0.010046313153241865 5.005636847654143E-5 36-37 1.8020292651554917E-4 3.704171267264066E-4 0.0 0.014616459595150098 5.005636847654143E-5 38-39 1.9021420021085743E-4 3.904396741170232E-4 0.0 0.020978624028518515 5.005636847654143E-5 40-41 2.202480212967823E-4 4.505073162888729E-4 0.0 0.02865727095281997 6.507327901950386E-5 42-43 2.202480212967823E-4 4.705298636794895E-4 0.0 0.035825342918660706 7.508455271481215E-5 44-45 2.302592949920906E-4 5.406087795466474E-4 0.0 0.04414471135946189 8.00901895624663E-5 46-47 2.302592949920906E-4 6.006764217184972E-4 0.0 0.05326998733273539 8.509582641012044E-5 48-49 2.302592949920906E-4 6.056820585661514E-4 0.0 0.06312108064891875 9.010146325777459E-5 50-51 2.302592949920906E-4 6.407215164997304E-4 0.0 0.07228139608012582 9.010146325777459E-5 52-53 2.3526493183974475E-4 6.457271533473845E-4 0.0 0.08074092235266134 1.0511837380073702E-4 54-55 2.4027056868739888E-4 6.65749700738001E-4 0.0 0.0904919029318916 1.2013528434369944E-4 56-57 2.4027056868739888E-4 7.007891586715801E-4 0.0 0.09819057240358367 1.251409211913536E-4 58-59 2.4027056868739888E-4 7.108004323668883E-4 0.0 0.10437753954728421 1.3014655803900773E-4 60-61 2.4027056868739888E-4 7.258173429098508E-4 0.0 0.11091990690716816 1.3014655803900773E-4 62-63 2.4027056868739888E-4 7.30822979757505E-4 0.0 0.116581282181865 1.4015783173431602E-4 64-65 2.4027056868739888E-4 8.40946990405896E-4 0.0 0.12263309713067885 1.4015783173431602E-4 66-67 2.6029311607801545E-4 8.659751746441668E-4 0.0 0.12863485571101618 1.4015783173431602E-4 68-69 2.6029311607801545E-4 8.910033588824375E-4 0.0 0.13495196941275572 1.4015783173431602E-4 70-71 2.652987529256696E-4 9.110259062730541E-4 0.0 0.14064337850853847 1.4015783173431602E-4 72-73 2.703043897733237E-4 9.110259062730541E-4 0.0 0.14549884625076298 1.601803791249326E-4 74-75 2.703043897733237E-4 9.310484536636707E-4 0.0 0.14912793296531224 1.6518601597258675E-4 76-77 2.703043897733237E-4 9.660879115972496E-4 0.0 0.1524616871058499 1.7019165282024088E-4 78-79 2.8031566346863203E-4 9.911160958355203E-4 0.0 0.15534993956694634 1.7019165282024088E-4 80-81 2.8031566346863203E-4 0.0010011273695308288 0.0 0.15689668135287146 1.7519728966789501E-4 82-83 2.8031566346863203E-4 0.0010211499169214453 0.0 0.15734218303231268 1.9021420021085743E-4 84-85 2.8031566346863203E-4 0.0010211499169214453 0.0 0.15761749305893366 1.9021420021085743E-4 86-87 2.8031566346863203E-4 0.0010311611906167536 0.0 0.15770759452219144 1.9021420021085743E-4 88-89 2.8031566346863203E-4 0.0010712062853979866 0.0 0.15776766216436328 2.0022547390616572E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCAACGC 31245 0.0 23.32571 4 ATCAACG 31355 0.0 23.230398 3 GGTATCA 23440 0.0 23.18136 1 GTATCAA 32850 0.0 23.06726 1 CAACGCA 31600 0.0 23.037027 5 CTTATAC 8330 0.0 22.843409 1 AACGCAG 32415 0.0 22.627468 6 ACGCAGA 37260 0.0 19.61739 7 CGCAGAG 37535 0.0 19.462399 8 GTACATG 23720 0.0 19.288836 1 TATACAC 12980 0.0 18.987686 3 TACATGG 23745 0.0 18.858936 2 ACATGGG 23260 0.0 18.738167 3 TATCAAC 39985 0.0 18.633833 2 AGAGTAC 32215 0.0 18.313053 10-11 GAGTACT 22645 0.0 18.285965 12-13 GCAGAGT 42805 0.0 16.997122 9 TATGCCG 6285 0.0 16.974602 42-43 CAGAGTA 35415 0.0 16.938862 10-11 AGTACTT 24785 0.0 16.75828 12-13 >>END_MODULE