##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139057_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4763367 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.59756701509667 33.0 33.0 33.0 33.0 33.0 2 32.61544722462074 33.0 33.0 33.0 33.0 33.0 3 32.670546905161835 33.0 33.0 33.0 33.0 33.0 4 36.578561131233435 37.0 37.0 37.0 37.0 37.0 5 36.578030204265175 37.0 37.0 37.0 37.0 37.0 6 36.08701408058627 37.0 37.0 37.0 33.0 37.0 7 35.915408155617655 37.0 37.0 37.0 33.0 37.0 8 35.83458108518617 37.0 37.0 37.0 33.0 37.0 9 35.83518276042975 37.0 37.0 37.0 33.0 37.0 10-11 35.76602569149092 37.0 37.0 37.0 33.0 37.0 12-13 35.675101981434565 37.0 37.0 37.0 33.0 37.0 14-15 37.33079615742394 40.0 37.0 40.0 33.0 40.0 16-17 37.25458336508608 40.0 37.0 40.0 33.0 40.0 18-19 37.28333938997352 40.0 37.0 40.0 33.0 40.0 20-21 37.209199636729025 40.0 37.0 40.0 33.0 40.0 22-23 37.081590036447835 40.0 37.0 40.0 33.0 40.0 24-25 37.06486295203197 40.0 37.0 40.0 33.0 40.0 26-27 36.89681633233819 40.0 37.0 40.0 33.0 40.0 28-29 36.72098858766788 40.0 37.0 40.0 33.0 40.0 30-31 36.51292572489544 40.0 37.0 40.0 33.0 40.0 32-33 36.29439305318076 38.5 37.0 40.0 33.0 40.0 34-35 36.19864798675495 37.0 37.0 40.0 30.0 40.0 36-37 36.004783337518475 37.0 37.0 40.0 27.0 40.0 38-39 36.043620019297684 37.0 37.0 40.0 27.0 40.0 40-41 36.089206664772604 37.0 37.0 40.0 27.0 40.0 42-43 36.01393005508519 37.0 37.0 40.0 27.0 40.0 44-45 35.8823531269522 37.0 37.0 40.0 27.0 40.0 46-47 35.71304697690064 37.0 37.0 40.0 27.0 40.0 48-49 35.54341381032012 37.0 37.0 40.0 27.0 40.0 50-51 35.55241315815983 37.0 37.0 40.0 27.0 40.0 52-53 35.44522069107296 37.0 33.0 40.0 27.0 40.0 54-55 35.27707776611272 37.0 33.0 40.0 27.0 40.0 56-57 35.03288901906812 37.0 33.0 40.0 27.0 40.0 58-59 34.91577137604533 37.0 33.0 40.0 27.0 40.0 60-61 34.8003142548949 37.0 33.0 40.0 27.0 40.0 62-63 34.65208320248057 37.0 33.0 40.0 27.0 40.0 64-65 34.493153680521274 37.0 33.0 40.0 27.0 40.0 66-67 34.252495709814994 37.0 33.0 40.0 27.0 40.0 68-69 34.073110035636994 37.0 33.0 37.0 27.0 40.0 70-71 33.842128712656184 37.0 33.0 37.0 27.0 40.0 72-73 33.54446411125117 37.0 33.0 37.0 22.0 40.0 74-75 33.18907408794063 37.0 33.0 37.0 22.0 40.0 76-77 31.21613539728262 33.0 30.0 35.0 22.0 37.0 78-79 33.28192464066271 37.0 33.0 37.0 27.0 37.0 80-81 33.6210290895842 37.0 33.0 37.0 27.0 37.0 82-83 33.53785652407194 37.0 33.0 37.0 27.0 37.0 84-85 33.42046966210715 37.0 33.0 37.0 27.0 37.0 86-87 33.27597496071933 37.0 33.0 37.0 27.0 37.0 88-89 33.11124790185322 35.0 33.0 37.0 27.0 37.0 90-91 33.03663770411347 33.0 33.0 37.0 27.0 37.0 92-93 33.08185060521326 33.0 33.0 37.0 27.0 37.0 94-95 33.138802561966514 33.0 33.0 37.0 27.0 37.0 96-97 33.2695644235043 33.0 33.0 37.0 27.0 37.0 98-99 33.43192503344304 33.0 33.0 37.0 27.0 37.0 100 33.40023371684461 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 8.0 16 20.0 17 57.0 18 254.0 19 601.0 20 1631.0 21 4313.0 22 10775.0 23 23790.0 24 43987.0 25 71806.0 26 102051.0 27 131626.0 28 155581.0 29 173288.0 30 184369.0 31 194540.0 32 205646.0 33 226894.0 34 265715.0 35 341887.0 36 531263.0 37 1092886.0 38 980862.0 39 19516.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.247882012870306 20.875968616316985 14.928767823264511 22.947381547548197 2 14.153754363262333 21.219452440099417 42.523971044754 22.10282215188425 3 17.81148623739187 27.20591384440195 30.62697818859438 24.355621729611798 4 12.187856441202856 18.65909141963032 39.74768817733669 29.405363961830126 5 12.99990384950474 38.51387863120323 35.633184600973344 12.853032918318686 6 29.165924019711266 38.60174956076238 19.134238449399344 13.098087970127011 7 26.02950811894192 33.24316602100993 23.370464631425627 17.356861228622527 8 24.16626726431115 37.06785557358902 21.442458664217977 17.323418497881857 9 25.565361644399854 17.50215761246194 21.709895542375804 35.2225852007624 10-11 23.938751249773663 27.381161941800563 28.971949961817938 19.708136846607832 12-13 24.89856518002666 24.788777398265754 29.224680343725296 21.087977077982288 14-15 22.03005012903595 26.166789920447513 27.15513653352284 24.648023416993695 16-17 21.363113528728732 29.40889291125374 27.629825709419407 21.598167850598117 18-19 21.35283718428582 28.363613385237795 29.639139709369445 20.64440972110694 20-21 22.197395556111953 27.439019523246795 29.647551895842412 20.716033024798847 22-23 21.952190975400644 27.478993858045026 29.384631362864784 21.184183803689546 24-25 21.72951942917116 27.63252530332571 29.46697891916693 21.170976348336197 26-27 21.747308243748773 27.844877709583148 29.30537541128449 21.10243863538359 28-29 21.574833490749747 27.812617936668133 29.361491738362815 21.251056834219305 30-31 21.84496988666325 27.69479800310531 29.28656058951165 21.17367152071979 32-33 21.64100467994638 27.879433545038594 29.25586954913325 21.223692225881774 34-35 21.69518505399941 27.942864187412592 29.259311662165153 21.10263909642284 36-37 21.966000793684554 27.84679411208829 28.965652412472586 21.22155268175457 38-39 21.74176575289303 27.966702652070463 29.055070665447637 21.236460929588873 40-41 21.90218535893667 27.90678813411883 28.913394485652084 21.277632021292415 42-43 21.916562464476527 27.979004700218944 28.721682128129977 21.382750707174548 44-45 21.97068420876468 28.107474092606726 28.442395492088078 21.479446206540516 46-47 22.04017433163203 28.02987242819283 28.080785993426154 21.849167246748983 48-49 21.926387796556465 28.21922970289187 28.055732529125198 21.79864997142647 50-51 21.878911817420672 28.28203478875387 28.05230182635936 21.786751567466098 52-53 21.994338512897016 28.278902393696274 27.90629068963564 21.82046840377107 54-55 22.01213908871119 28.213311417405507 27.921750753089015 21.852798740794288 56-57 22.044646640372388 28.387090948176123 27.801679476635083 21.7665829348164 58-59 21.924206545609735 28.531757439607368 27.89004703378905 21.653988980993844 60-61 22.07912517461136 28.46014664356501 27.767348725112264 21.69337945671137 62-63 22.01164612228913 28.589150901328825 27.718781625997973 21.68042135038407 64-65 22.000104574292624 28.54575731441461 27.738233157324434 21.71590495396833 66-67 22.030251307941835 28.452828299935167 27.684992822410187 21.831927569712814 68-69 21.97487490777946 28.37549108573418 27.8106947128227 21.83893929366366 70-71 21.992881886654423 28.17008544520483 27.833455892124636 22.00357677601611 72-73 22.037715434492593 28.180665796029388 27.806281544470156 21.97533722500786 74-75 21.951265457919828 28.284309601728737 27.809895133100294 21.954529807251138 76-77 21.99058211930965 28.269620693292495 27.776966041195415 21.96283114620244 78-79 21.835620955594635 28.21522337319185 27.864690710805558 22.084464960407953 80-81 21.923643389273913 28.20220759325346 27.917101642149543 21.957047375323086 82-83 21.91340371461738 28.172593949623543 27.972602528416573 21.9413998073425 84-85 22.040600202790205 28.17352271992948 27.911141019382463 21.874736057897856 86-87 21.88604176709557 28.172112797528737 27.936475528674347 22.005369906701347 88-89 21.947035365420316 28.06893994330306 27.926903752957656 22.057120938318967 90-91 21.93605781455755 28.20861781027803 27.948094697572035 21.907229677592387 92-93 21.94441682096591 28.127327444975787 28.002991747907235 21.925263986151073 94-95 21.828318196823844 28.154356059873937 28.023404056280448 21.99392168702177 96-97 21.796921830856654 28.24516376640263 28.177839646654267 21.78007475608645 98-99 23.003620488870514 30.06628410439224 28.43077546627213 18.49931994046512 100 22.168725699058413 30.931831461184352 22.18985328151134 24.70958955824589 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 586.0 1 577.0 2 1028.5 3 1570.0 4 2296.0 5 4356.5 6 6134.5 7 6901.0 8 6943.5 9 6279.5 10 5436.0 11 4682.5 12 5038.0 13 7249.5 14 12646.5 15 20561.0 16 27813.5 17 32994.0 18 35318.5 19 34365.0 20 31767.5 21 28967.0 22 27484.5 23 28812.5 24 32378.5 25 38339.5 26 47032.0 27 56969.5 28 67709.5 29 79693.5 30 91082.0 31 102661.5 32 115397.5 33 126663.0 34 137688.5 35 148015.0 36 157692.0 37 166414.0 38 172907.5 39 177562.0 40 182664.0 41 188121.0 42 190895.0 43 193400.5 44 197210.5 45 200123.0 46 202143.5 47 203122.0 48 201085.0 49 197554.0 50 194073.0 51 187954.0 52 179030.5 53 168168.5 54 156505.5 55 144208.0 56 130300.5 57 116631.0 58 103174.0 59 89665.5 60 75861.0 61 62693.0 62 51006.5 63 40243.5 64 30904.5 65 23941.0 66 18701.0 67 14713.0 68 11547.0 69 8740.0 70 6544.0 71 4950.5 72 3716.5 73 2841.5 74 2164.5 75 1620.0 76 1233.5 77 918.0 78 671.0 79 489.5 80 362.0 81 265.5 82 189.5 83 121.5 84 78.0 85 55.5 86 47.0 87 34.5 88 18.5 89 9.5 90 6.0 91 3.0 92 1.5 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 3.358968561523813E-4 3 0.003589897650128575 4 0.0028131361702761933 5 2.099355350952383E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 9.447099079285723E-5 12-13 0.0018159423785738113 14-15 0.003348471784769051 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.005978318701012389 26-27 0.018667290456500677 28-29 0.008050918196111903 30-31 0.0 32-33 0.0 34-35 2.3563401025629164E-4 36-37 0.014363949974260102 38-39 0.03830668845824241 40-41 0.04359528970382988 42-43 0.008280573960186692 44-45 3.989914383087196E-4 46-47 0.0 48-49 0.030962985035386834 50-51 0.046566310677374406 52-53 0.04842987312938464 54-55 0.026578694940793606 56-57 9.733894099454129E-4 58-59 0.007124207535633484 60-61 0.0330108799257411 62-63 0.03792469205113716 64-65 0.01744641318885173 66-67 0.04632592448762859 68-69 0.06212056825791759 70-71 0.07464392998900198 72-73 0.05032953650340877 74-75 0.0218521714789173 76-77 0.00492226724317094 78-79 3.812981413556359E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002051782596047241 92-93 0.002733898539317066 94-95 5.566472886406379E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1382.0 20-21 4460.0 22-23 5010.0 24-25 8842.0 26-27 12253.0 28-29 17823.0 30-31 18702.0 32-33 20535.0 34-35 24314.0 36-37 25280.0 38-39 28139.0 40-41 34145.0 42-43 39685.0 44-45 46747.0 46-47 46848.0 48-49 36208.0 50-51 39436.0 52-53 36733.0 54-55 42236.0 56-57 44032.0 58-59 46453.0 60-61 46184.0 62-63 43574.0 64-65 41075.0 66-67 50980.0 68-69 37603.0 70-71 40737.0 72-73 38853.0 74-75 36772.0 76-77 33832.0 78-79 46897.0 80-81 56863.0 82-83 65051.0 84-85 67156.0 86-87 71965.0 88-89 74468.0 90-91 81760.0 92-93 90853.0 94-95 106971.0 96-97 196047.0 98-99 291700.0 100-101 2664763.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.1303702028457 #Duplication Level Percentage of deduplicated Percentage of total 1 91.49681088496195 80.63647815671459 2 6.1022894553760345 10.755940575744232 3 1.434743608979827 3.7933345621667716 4 0.4778771787875136 1.6846197071214024 5 0.2154342260043377 0.9493149046062906 6 0.10981879953106445 0.5807022874742884 7 0.05436542851103897 0.33538717386399447 8 0.0321839954494829 0.22691099468557038 9 0.021279607857546706 0.16878417464312778 >10 0.053971053600066855 0.6812847683052301 >50 5.060170302547897E-4 0.03146546549496371 >100 7.197439108827244E-4 0.1557772291795499 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.198710701904766E-5 2 0.0 0.0 0.0 0.0 4.198710701904766E-5 3 0.0 0.0 0.0 0.0 4.198710701904766E-5 4 0.0 6.298066052857149E-5 0.0 0.0 6.298066052857149E-5 5 0.0 6.298066052857149E-5 0.0 0.0 6.298066052857149E-5 6 8.397421403809532E-5 8.397421403809532E-5 0.0 0.0 1.0496776754761916E-4 7 8.397421403809532E-5 8.397421403809532E-5 0.0 6.298066052857149E-5 1.0496776754761916E-4 8 8.397421403809532E-5 1.0496776754761916E-4 0.0 6.298066052857149E-5 1.0496776754761916E-4 9 8.397421403809532E-5 1.8894198158571446E-4 0.0 1.0496776754761916E-4 1.0496776754761916E-4 10-11 8.397421403809532E-5 1.8894198158571446E-4 0.0 1.0496776754761916E-4 1.0496776754761916E-4 12-13 8.397421403809532E-5 1.8894198158571446E-4 0.0 1.0496776754761916E-4 1.1546454430238107E-4 14-15 8.397421403809532E-5 3.77883963171429E-4 0.0 1.2596132105714298E-4 1.6794842807619064E-4 16-17 1.0496776754761916E-4 4.1987107019047663E-4 0.0 1.2596132105714298E-4 2.3092908860476214E-4 18-19 1.0496776754761916E-4 4.828517307190481E-4 0.0 1.2596132105714298E-4 2.729161956238098E-4 20-21 1.0496776754761916E-4 5.668259447571435E-4 0.0 1.364580978119049E-4 2.729161956238098E-4 22-23 1.0496776754761916E-4 6.298066052857149E-4 0.0 2.0993553509523832E-4 3.2540007939761933E-4 24-25 1.0496776754761916E-4 7.032840425690483E-4 0.0 2.2043231185000023E-4 3.988775166809528E-4 26-27 1.0496776754761916E-4 7.557679263428579E-4 0.0 2.624194188690479E-4 4.1987107019047663E-4 28-29 1.0496776754761916E-4 7.977550333619056E-4 0.0 6.298066052857149E-4 4.1987107019047663E-4 30-31 1.0496776754761916E-4 8.817292474000009E-4 0.0 0.0015430261829500016 4.1987107019047663E-4 32-33 1.0496776754761916E-4 8.817292474000009E-4 0.0 0.0032749943474857175 4.618581772095243E-4 34-35 1.0496776754761916E-4 9.657034614380961E-4 0.0 0.0053428593681738145 4.618581772095243E-4 36-37 1.0496776754761916E-4 0.0010496776754761914 0.0 0.008848782804264295 4.618581772095243E-4 38-39 1.0496776754761916E-4 0.0010916647824952392 0.0 0.014443564814552395 4.618581772095243E-4 40-41 1.0496776754761916E-4 0.0011546454430238107 0.0 0.019922882280538116 4.618581772095243E-4 42-43 1.0496776754761916E-4 0.0012071293267976201 0.0 0.02504530933686193 4.618581772095243E-4 44-45 1.0496776754761916E-4 0.0013330906478547632 0.0 0.031731756129645274 4.618581772095243E-4 46-47 1.0496776754761916E-4 0.0014275616386476204 0.0 0.03913198374175242 4.7235495396428617E-4 48-49 1.0496776754761916E-4 0.0014380584154023825 0.0 0.04510464971521195 5.668259447571435E-4 50-51 1.2596132105714298E-4 0.0016794842807619065 0.0 0.050006644459685765 5.773227215119054E-4 52-53 1.469548745666668E-4 0.0016794842807619065 0.0 0.05598980720990006 6.088130517761911E-4 54-55 1.469548745666668E-4 0.0016899810575166684 0.0 0.06221439582547387 6.298066052857149E-4 56-57 1.469548745666668E-4 0.0017004778342714303 0.0 0.06850196510157626 6.298066052857149E-4 58-59 1.469548745666668E-4 0.001731968164535716 0.0 0.0736453857114096 6.298066052857149E-4 60-61 1.469548745666668E-4 0.0017634584948000018 0.0 0.07945010325679294 6.298066052857149E-4 62-63 2.0993553509523832E-4 0.001836935932083335 0.0 0.0860735693890477 6.298066052857149E-4 64-65 2.0993553509523832E-4 0.0020573682439333353 0.0 0.09192027404145009 6.298066052857149E-4 66-67 2.3092908860476214E-4 0.0020573682439333353 0.0 0.09803989488947629 6.403033820404768E-4 68-69 2.3092908860476214E-4 0.002109852127707145 0.0 0.10408603830021915 6.612969355500007E-4 70-71 2.3092908860476214E-4 0.002141342457971431 0.0 0.10931343312409059 6.927872658142864E-4 72-73 2.939097491333336E-4 0.0021623360114809546 0.0 0.11568497661423108 7.557679263428579E-4 74-75 2.939097491333336E-4 0.002204323118500002 0.0 0.12132174573153823 7.557679263428579E-4 76-77 3.0440652588809556E-4 0.0022778005557833356 0.0 0.126402185680843 7.662647030976198E-4 78-79 3.1490330264285745E-4 0.002330284439557145 0.0 0.12944625093972395 7.767614798523817E-4 80-81 3.1490330264285745E-4 0.002330284439557145 0.0 0.13045394150818107 8.187485868714294E-4 82-83 3.1490330264285745E-4 0.002330284439557145 0.0 0.1324798194218501 8.817292474000009E-4 84-85 3.1490330264285745E-4 0.002351277993066669 0.0 0.13425377469340488 8.817292474000009E-4 86-87 3.1490330264285745E-4 0.0023722715465761927 0.0 0.13514600071755967 8.817292474000009E-4 88 3.1490330264285745E-4 0.002477239314123812 0.0 0.13526146526186203 8.817292474000009E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6370 0.0 47.637398 1 GTATCAA 12275 0.0 37.772873 1 ATCAACG 14395 0.0 31.318409 3 TCAACGC 14410 0.0 31.255768 4 TATCAAC 14880 0.0 30.464542 2 CAACGCA 14730 0.0 30.435278 5 AACGCAG 15110 0.0 29.644648 6 CGCAGAG 17085 0.0 26.194641 8 ACGCAGA 17030 0.0 26.181448 7 GCAGAGT 19920 0.0 22.301073 9 GAGTACT 12635 0.0 19.823465 12-13 GTACATG 13110 0.0 19.704498 1 TACATGG 12910 0.0 19.65702 2 GTGGTAT 3315 0.0 19.231833 1 CAGAGTA 19285 0.0 18.967161 10-11 AGAGTAC 18130 0.0 18.725414 10-11 CTTATAC 3140 0.0 18.589725 1 ACATGGG 12970 0.0 18.576612 3 GTACTTT 14200 0.0 17.707417 14-15 TGGTATC 3400 0.0 17.168158 2 >>END_MODULE