##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139056_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3459079 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54659086999747 33.0 33.0 33.0 33.0 33.0 2 32.54590918565317 33.0 33.0 33.0 33.0 33.0 3 32.634305836900516 33.0 33.0 33.0 33.0 33.0 4 36.52599637071024 37.0 37.0 37.0 37.0 37.0 5 36.56131039505024 37.0 37.0 37.0 37.0 37.0 6 35.902210675153704 37.0 37.0 37.0 33.0 37.0 7 35.696261924055506 37.0 37.0 37.0 33.0 37.0 8 35.56643979510153 37.0 37.0 37.0 33.0 37.0 9 35.530059301912445 37.0 37.0 37.0 33.0 37.0 10-11 35.44045351378213 37.0 37.0 37.0 33.0 37.0 12-13 35.32353583135858 37.0 37.0 37.0 33.0 37.0 14-15 36.781690877831934 38.5 37.0 40.0 33.0 40.0 16-17 36.685912926533334 37.0 37.0 40.0 33.0 40.0 18-19 36.71041684795288 38.5 37.0 40.0 33.0 40.0 20-21 36.630619719123914 38.5 37.0 40.0 33.0 40.0 22-23 36.46643734170997 37.0 37.0 40.0 33.0 40.0 24-25 36.440840530062886 37.0 37.0 40.0 33.0 40.0 26-27 36.24218897018498 37.0 37.0 40.0 27.0 40.0 28-29 36.00378416192114 37.0 37.0 40.0 27.0 40.0 30-31 35.760817801281085 37.0 37.0 40.0 27.0 40.0 32-33 35.511971400351285 37.0 33.0 40.0 27.0 40.0 34-35 35.397712181057344 37.0 33.0 40.0 27.0 40.0 36-37 35.08871887898987 37.0 33.0 40.0 24.5 40.0 38-39 35.159582943547505 37.0 33.0 40.0 27.0 40.0 40-41 35.24300681174887 37.0 33.0 40.0 27.0 40.0 42-43 35.158366821055075 37.0 33.0 40.0 27.0 40.0 44-45 34.98013081091188 37.0 33.0 40.0 24.5 40.0 46-47 34.76890125301346 37.0 33.0 40.0 22.0 40.0 48-49 34.585795222774415 37.0 33.0 40.0 22.0 40.0 50-51 34.642000887605846 37.0 33.0 40.0 22.0 40.0 52-53 34.506625797795266 37.0 33.0 40.0 22.0 40.0 54-55 34.3321714913627 37.0 33.0 40.0 22.0 40.0 56-57 34.03049912433216 37.0 33.0 40.0 22.0 40.0 58-59 33.86392120688227 37.0 33.0 40.0 22.0 40.0 60-61 33.73665431230472 37.0 33.0 40.0 22.0 40.0 62-63 33.57616537012857 37.0 33.0 40.0 22.0 40.0 64-65 33.45326911229334 37.0 33.0 40.0 22.0 40.0 66-67 33.2380379209214 37.0 33.0 37.0 22.0 40.0 68-69 33.09734614502539 37.0 33.0 37.0 22.0 40.0 70-71 32.8497414858421 37.0 33.0 37.0 22.0 40.0 72-73 32.508737716659525 37.0 33.0 37.0 22.0 40.0 74-75 32.09666628747099 37.0 30.0 37.0 22.0 40.0 76-77 30.548479065727232 33.0 27.0 35.0 22.0 37.0 78-79 32.6184010887729 35.0 33.0 37.0 24.5 37.0 80-81 32.97323400895182 37.0 33.0 37.0 27.0 37.0 82-83 32.8557299205792 37.0 33.0 37.0 27.0 37.0 84-85 32.689595697600055 33.0 33.0 37.0 27.0 37.0 86-87 32.54336023049774 33.0 33.0 37.0 27.0 37.0 88-89 32.389793879037946 33.0 33.0 37.0 27.0 37.0 90-91 32.34997345497902 33.0 33.0 37.0 27.0 37.0 92-93 32.41124155877528 33.0 33.0 37.0 27.0 37.0 94-95 32.50996515842212 33.0 33.0 37.0 27.0 37.0 96-97 32.738552091710176 33.0 33.0 37.0 27.0 37.0 98-99 33.0030085560944 33.0 33.0 37.0 27.0 37.0 100 32.96322037904382 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 3.0 15 9.0 16 32.0 17 71.0 18 244.0 19 660.0 20 1786.0 21 4530.0 22 10894.0 23 23310.0 24 42898.0 25 68597.0 26 97520.0 27 123807.0 28 146167.0 29 159914.0 30 166544.0 31 171971.0 32 177042.0 33 187612.0 34 208970.0 35 248914.0 36 346599.0 37 648245.0 38 607281.0 39 15456.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34849189625331 21.185899483648683 15.038800790615072 22.426807829482932 2 14.12841739846386 21.723275429422525 42.502393711131106 21.64591346098251 3 17.98966181172702 27.517186948904605 30.713236697099177 23.779914542269196 4 12.1933661982092 18.868364723799743 40.061497329295186 28.876771748695873 5 12.882189993981056 38.832284209838576 35.59165187948927 12.693873916691095 6 28.87751334965174 39.172190054057744 19.014078603003863 12.936217993286652 7 25.69157859649924 33.73782443245731 23.535050803985687 17.035546167057763 8 24.002747552166344 37.58841587601787 21.212033607789817 17.196802964025974 9 25.599733339423587 17.75938045936505 21.9519993616798 34.68888683953156 10-11 23.81131894923947 27.778607318631813 28.964227580461888 19.445846151666828 12-13 24.86202659728245 25.322694420352704 29.31741832899682 20.497860653368026 14-15 21.94229436859612 26.80040815423824 27.308938615400784 23.948358861764856 16-17 21.133558961793007 29.893578608641203 27.87471751873837 21.098144910827422 18-19 21.113510272532082 28.844296415317487 29.95573388176448 20.08645943038595 20-21 21.929274766278894 27.89295818572451 29.9402120070398 20.237555040956792 22-23 21.660351608095247 27.85728643448955 29.782389704668432 20.699972252746775 24-25 21.547824790251312 28.014124727324525 29.801764677041128 20.63628580538304 26-27 21.479619604344535 28.177180158526312 29.757818179068003 20.585382058061157 28-29 21.289213206884952 28.377711055684095 29.615807225762236 20.717268511668717 30-31 21.605578890121247 28.14153024726161 29.585295965808882 20.66759489680826 32-33 21.43215043078354 28.36536780879999 29.424881000020207 20.777600760396265 34-35 21.49360096012308 28.478487450023266 29.440005365672988 20.587906224180667 36-37 21.670328882141412 28.416884394778112 29.25397644875426 20.658810274326214 38-39 21.422780333104328 28.63723588798417 29.32323017628241 20.616753602629093 40-41 21.63337281500799 28.486749105212724 29.136140452579877 20.74373762719941 42-43 21.53391598316299 28.68287344378158 28.81647204409841 20.96673852895701 44-45 21.71629421664169 28.77409835928405 28.49004455888685 21.019562865187403 46-47 21.873606541181356 28.708907346091074 28.191316172753005 21.226169939974564 48-49 21.72267942303605 28.860861474941423 28.17943003618434 21.23702906583819 50-51 21.611994523967773 28.986047953716497 28.1296982762849 21.272259246030835 52-53 21.72437359817391 28.979974110497775 27.896386027868065 21.399266263460255 54-55 21.723999469000084 28.828376977699154 28.02353704834781 21.424086504952953 56-57 21.821085447796058 28.974622782914274 27.83232405100061 21.371967718289056 58-59 21.708218031657335 29.059246353248664 27.96944928982495 21.26308632526905 60-61 21.773372518983937 29.10851846523135 28.00095186984087 21.117157145943853 62-63 21.770676463707336 29.297420478472212 27.796774948227608 21.13512810959284 64-65 21.69554568836633 29.242383341588496 27.880071175751382 21.181999794293795 66-67 21.769474504877472 29.109602881813494 27.816005758499458 21.304916854809576 68-69 21.750180045927063 29.08274455726761 27.88940304210799 21.277672354697337 70-71 21.748682050679236 28.883514980024867 27.938989965541456 21.428813003754442 72-73 21.74710333609074 28.858286004038025 27.966922235608287 21.42768842426295 74-75 21.571762496904515 29.061722437898606 27.852378748349622 21.51413631684726 76-77 21.552727193364515 28.91585037325082 28.01684112239989 21.51458131098478 78-79 21.512729330660793 28.941390504227094 28.07177029169897 21.47410987341315 80-81 21.58184982532482 29.057810587732334 27.9653251912818 21.395014395661054 82-83 21.542976153343695 28.90743937428778 28.130074705256224 21.419509767112302 84-85 21.653192891354163 28.932842573196037 28.023465186190528 21.39049934925927 86-87 21.404009750925972 28.987103437752094 28.14240992815439 21.466476883167545 88-89 21.486588973856115 28.851048611356774 28.170877016485633 21.491485398301478 90-91 21.466170533392066 28.93190278023612 28.237542436828843 21.36438424954297 92-93 21.548725603895917 28.959172037923697 28.169533740328934 21.322568617851456 94-95 21.394527663856262 28.95115022770704 28.2924004098085 21.361921698628198 96-97 21.358704277795773 29.221537789492903 28.445443812418002 20.97431412029332 98-99 22.426640950125908 31.1316863098128 28.645419185881266 17.796253554180026 100 21.57312474203407 31.89211467974595 22.717582134587953 23.81717844363202 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 501.0 1 502.0 2 842.5 3 1257.0 4 1888.5 5 3603.0 6 5066.5 7 5649.0 8 5705.0 9 5305.0 10 4741.0 11 4209.5 12 4506.5 13 6350.5 14 10573.0 15 16780.0 16 22729.0 17 27120.5 18 29208.5 19 28693.5 20 27056.0 21 25321.0 22 24190.0 23 24845.0 24 27793.0 25 32954.0 26 39808.0 27 47622.5 28 56002.0 29 65059.5 30 74136.0 31 83061.0 32 92211.0 33 100458.0 34 108704.0 35 115928.0 36 123015.0 37 130141.0 38 134919.5 39 138588.5 40 142517.5 41 145968.5 42 147577.5 43 148507.5 44 148853.0 45 149187.0 46 150125.5 47 151286.0 48 151313.5 49 146818.5 50 140981.5 51 134959.0 52 126931.0 53 118143.5 54 108965.5 55 99539.5 56 89924.0 57 80634.5 58 71118.0 59 61659.5 60 52365.5 61 43611.5 62 35928.0 63 28841.0 64 22643.5 65 17886.0 66 14109.0 67 11216.0 68 8839.5 69 6689.5 70 5128.0 71 3980.0 72 2997.0 73 2242.5 74 1675.5 75 1301.0 76 1021.0 77 778.0 78 582.5 79 419.5 80 294.5 81 216.5 82 168.5 83 117.0 84 79.5 85 56.5 86 41.5 87 33.5 88 22.5 89 12.5 90 8.0 91 5.5 92 3.5 93 2.5 94 2.0 95 2.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.336414403949722E-4 3 0.001705656332220224 4 0.0019369317670975426 5 2.890942935966481E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.0118300275882684E-4 12-13 0.0022838449194135203 14-15 0.0026741222157689952 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0042790702262148605 26-27 0.012957231393030346 28-29 0.00546223427289118 30-31 0.0 32-33 0.0 34-35 2.0774133236387378E-4 36-37 0.02054204096755254 38-39 0.057078398398795964 40-41 0.06569721319155152 42-43 0.010921385021557865 44-45 4.3385729348973886E-4 46-47 0.0 48-49 0.03901053507091632 50-51 0.03535045823774992 52-53 0.046083346463997504 54-55 0.03004477608994949 56-57 8.328029766377113E-4 58-59 0.005924385598173061 60-61 0.027091181837414942 62-63 0.04264745417910406 64-65 0.02711006211450413 66-67 0.07155612147318789 68-69 0.08240643387285158 70-71 0.06821605159866527 72-73 0.03823743728144585 74-75 0.017074979213883703 76-77 0.004042161451898848 78-79 3.8446300418238077E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0016191497955324332 92-93 0.002311641288202161 94-95 7.604832015202059E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1311.0 20-21 4212.0 22-23 4592.0 24-25 8080.0 26-27 12278.0 28-29 16905.0 30-31 17382.0 32-33 19088.0 34-35 22463.0 36-37 23168.0 38-39 25508.0 40-41 31020.0 42-43 35949.0 44-45 42145.0 46-47 42501.0 48-49 32982.0 50-51 36250.0 52-53 33049.0 54-55 38197.0 56-57 39087.0 58-59 38901.0 60-61 39054.0 62-63 36634.0 64-65 35221.0 66-67 43228.0 68-69 33154.0 70-71 36041.0 72-73 34766.0 74-75 33367.0 76-77 30356.0 78-79 44362.0 80-81 50550.0 82-83 61295.0 84-85 61998.0 86-87 60967.0 88-89 61838.0 90-91 67993.0 92-93 76751.0 94-95 88686.0 96-97 142526.0 98-99 194418.0 100-101 1700806.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 92.5500625080796 #Duplication Level Percentage of deduplicated Percentage of total 1 94.53781426795663 87.49480619876607 2 4.174541975682505 7.72708241584036 3 0.8184699252216688 2.272483282207461 4 0.2416319662407648 0.8945221431813186 5 0.1025653433044844 0.47462144669963385 6 0.048405731444785785 0.26879720825785436 7 0.02564828177974548 0.16616250573581987 8 0.015532444853038625 0.11500229936416194 9 0.00991824556082753 0.08261408219625639 >10 0.024301539227250694 0.32524288832301407 >50 4.251133372341948E-4 0.027505796771242857 >100 7.45165391006294E-4 0.15115973265681987 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.8909429359664813E-5 0.0 2 0.0 0.0 0.0 2.8909429359664813E-5 0.0 3 0.0 0.0 0.0 8.672828807899444E-5 0.0 4 0.0 8.672828807899444E-5 0.0 1.1563771743865925E-4 0.0 5 0.0 8.672828807899444E-5 0.0 1.4454714679832406E-4 0.0 6 0.0 8.672828807899444E-5 0.0 1.4454714679832406E-4 0.0 7 0.0 8.672828807899444E-5 0.0 1.734565761579889E-4 0.0 8 0.0 8.672828807899444E-5 0.0 1.734565761579889E-4 0.0 9 0.0 1.1563771743865925E-4 0.0 1.734565761579889E-4 0.0 10-11 0.0 1.1563771743865925E-4 0.0 2.168207201974861E-4 0.0 12-13 0.0 1.3009243211849165E-4 0.0 2.457301495571509E-4 1.4454714679832407E-5 14-15 0.0 1.5900186147815647E-4 0.0 2.601848642369833E-4 2.8909429359664813E-5 16-17 0.0 1.734565761579889E-4 0.0 2.601848642369833E-4 2.8909429359664813E-5 18-19 5.781885871932963E-5 1.734565761579889E-4 0.0 3.469131523159778E-4 4.336414403949722E-5 20-21 5.781885871932963E-5 1.734565761579889E-4 0.0 4.0473201103530737E-4 5.781885871932963E-5 22-23 5.781885871932963E-5 2.3127543487731848E-4 0.0 4.770055844344694E-4 5.781885871932963E-5 24-25 5.781885871932963E-5 3.0354900827648054E-4 0.0 5.492791578336314E-4 5.781885871932963E-5 26-27 5.781885871932963E-5 3.1800372295631295E-4 0.0 7.660998780311176E-4 1.1563771743865925E-4 28-29 5.781885871932963E-5 3.1800372295631295E-4 0.0 0.0011997413184260896 1.1563771743865925E-4 30-31 1.1563771743865925E-4 3.7582258167564254E-4 0.0 0.002500665639611006 1.1563771743865925E-4 32-33 1.1563771743865925E-4 3.7582258167564254E-4 0.0 0.00540606329025732 1.1563771743865925E-4 34-35 1.1563771743865925E-4 3.9027729635547495E-4 0.0 0.008456008087701958 1.1563771743865925E-4 36-37 1.4454714679832406E-4 4.0473201103530737E-4 0.0 0.013052607355888663 1.1563771743865925E-4 38-39 1.4454714679832406E-4 4.0473201103530737E-4 0.0 0.02108942871787548 1.1563771743865925E-4 40-41 1.734565761579889E-4 4.336414403949722E-4 0.0 0.029097340650502634 1.1563771743865925E-4 42-43 1.734565761579889E-4 4.6255086975463696E-4 0.0 0.03769789588500291 1.1563771743865925E-4 44-45 1.734565761579889E-4 5.059150137941342E-4 0.0 0.0472380075736923 1.1563771743865925E-4 46-47 1.734565761579889E-4 5.203697284739666E-4 0.0 0.05692266640918002 1.1563771743865925E-4 48-49 1.734565761579889E-4 5.203697284739666E-4 0.0 0.06598577251343493 1.1563771743865925E-4 50-51 1.734565761579889E-4 5.492791578336314E-4 0.0 0.07357449772034694 1.1563771743865925E-4 52-53 1.734565761579889E-4 5.492791578336314E-4 0.0 0.0826954226833212 1.1563771743865925E-4 54-55 1.734565761579889E-4 5.492791578336314E-4 0.0 0.09213435136925176 1.3009243211849165E-4 56-57 1.734565761579889E-4 5.492791578336314E-4 0.0 0.10020008216059824 1.4454714679832406E-4 58-59 1.734565761579889E-4 5.492791578336314E-4 0.0 0.10706607163351864 1.4454714679832406E-4 60-61 1.734565761579889E-4 5.492791578336314E-4 0.0 0.11329605366052639 1.4454714679832406E-4 62-63 2.0236600551765368E-4 5.492791578336314E-4 0.0 0.12134732973719305 1.4454714679832406E-4 64-65 2.0236600551765368E-4 5.781885871932963E-4 0.0 0.12789531548715716 1.4454714679832406E-4 66-67 2.0236600551765368E-4 5.781885871932963E-4 0.0 0.13486248796283634 1.4454714679832406E-4 68-69 2.0236600551765368E-4 5.926433018731286E-4 0.0 0.14298603761290218 1.4454714679832406E-4 70-71 2.0236600551765368E-4 6.070980165529611E-4 0.0 0.14840655561783933 1.734565761579889E-4 72-73 2.0236600551765368E-4 6.070980165529611E-4 0.0 0.15677583541746226 1.734565761579889E-4 74-75 2.0236600551765368E-4 6.070980165529611E-4 0.0 0.16372855317846166 1.734565761579889E-4 76-77 2.0236600551765368E-4 6.215527312327935E-4 0.0 0.1693514371889165 1.734565761579889E-4 78-79 2.0236600551765368E-4 6.360074459126259E-4 0.0 0.17263265742123843 1.734565761579889E-4 80-81 2.0236600551765368E-4 6.360074459126259E-4 0.0 0.17436722318281833 1.879112908378213E-4 82-83 2.0236600551765368E-4 6.360074459126259E-4 0.0 0.17753280569770163 2.0236600551765368E-4 84-85 2.0236600551765368E-4 6.649168752722907E-4 0.0 0.17990337890519414 2.0236600551765368E-4 86-87 2.0236600551765368E-4 6.649168752722907E-4 0.0 0.1813633050878572 2.0236600551765368E-4 88 2.0236600551765368E-4 6.649168752722907E-4 0.0 0.1814933975199757 2.0236600551765368E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9110 0.0 27.629755 1 GTATCAA 13455 0.0 26.613932 1 TCAACGC 15440 0.0 22.645723 4 ATCAACG 15500 0.0 22.558712 3 CAACGCA 15655 0.0 22.30907 5 TATCAAC 15940 0.0 22.137493 2 AACGCAG 16045 0.0 21.793722 6 ACGCAGA 17675 0.0 19.693035 7 GAGTACT 10200 0.0 19.542137 12-13 CGCAGAG 17860 0.0 19.534286 8 GTACATG 9505 0.0 18.921421 1 TACATGG 9485 0.0 18.241806 2 AGAGTAC 14285 0.0 18.015638 10-11 GCAGAGT 19420 0.0 17.614172 9 GTACTTT 11445 0.0 17.514652 14-15 ACATGGG 9615 0.0 17.410637 3 AGGACCG 685 0.0 16.409025 5 AGTACTT 10990 0.0 16.32912 12-13 CAGAGTA 18220 0.0 16.052881 10-11 CATGGGG 6960 0.0 15.63059 4 >>END_MODULE