##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139055_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11613146 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44635286596758 34.0 31.0 34.0 31.0 34.0 2 32.58640475199399 34.0 31.0 34.0 31.0 34.0 3 32.646388584109765 34.0 31.0 34.0 31.0 34.0 4 36.18128395182494 37.0 35.0 37.0 35.0 37.0 5 36.094120490692184 37.0 35.0 37.0 35.0 37.0 6 36.12971980202436 37.0 36.0 37.0 35.0 37.0 7 36.079549159202855 37.0 35.0 37.0 35.0 37.0 8 36.052547173694364 37.0 35.0 37.0 35.0 37.0 9 37.763629424791525 39.0 38.0 39.0 35.0 39.0 10-11 37.68814544310388 39.0 37.0 39.0 35.0 39.0 12-13 37.63282425795732 39.0 37.0 39.0 35.0 39.0 14-15 38.96540304410192 40.0 38.0 41.0 35.0 41.0 16-17 38.933899005489124 40.0 38.0 41.0 35.0 41.0 18-19 38.92460837054834 40.0 38.0 41.0 35.0 41.0 20-21 38.89272750156859 40.0 38.0 41.0 35.0 41.0 22-23 38.78726754239328 40.0 38.0 41.0 34.5 41.0 24-25 38.661009224332616 40.0 38.0 41.0 34.0 41.0 26-27 38.589599766052565 40.0 38.0 41.0 34.0 41.0 28-29 38.53638710821206 40.0 38.0 41.0 34.0 41.0 30-31 38.463025615229604 40.0 38.0 41.0 34.0 41.0 32-33 38.358818870611074 40.0 38.0 41.0 34.0 41.0 34-35 38.24729486970385 40.0 38.0 41.0 34.0 41.0 36-37 38.38827319073404 40.0 38.0 41.0 34.0 41.0 38-39 38.44913823359782 40.0 38.0 41.0 34.0 41.0 40-41 38.3917938327239 40.0 38.0 41.0 34.0 41.0 42-43 38.35788337956314 40.0 38.0 41.0 34.0 41.0 44-45 38.325503624517225 40.0 38.0 41.0 33.5 41.0 46-47 38.234105460289385 40.0 38.0 41.0 33.0 41.0 48-49 38.155486906418446 40.0 38.0 41.0 33.0 41.0 50-51 38.07923694998169 40.0 37.0 41.0 33.0 41.0 52-53 38.004954539211326 40.0 37.0 41.0 33.0 41.0 54-55 37.87516667839405 40.0 37.0 41.0 33.0 41.0 56-57 37.71632808388809 40.0 36.5 41.0 33.0 41.0 58-59 37.588132119529945 39.0 36.0 41.0 33.0 41.0 60-61 37.434959146154874 39.0 36.0 41.0 32.0 41.0 62-63 37.21172406288757 39.0 35.0 40.5 32.0 41.0 64-65 36.88652878512238 38.5 35.0 40.0 31.5 41.0 66-67 36.58771151130588 38.0 35.0 40.0 31.0 41.0 68-69 36.31039036096654 37.0 35.0 40.0 31.0 41.0 70-71 36.00135620528551 37.0 35.0 39.5 31.0 41.0 72-73 35.69212221967138 36.0 34.0 39.0 30.5 41.0 74-75 35.366436186777634 36.0 34.0 39.0 30.0 40.0 76-77 34.387490123117665 35.0 33.5 37.0 29.0 39.0 78-79 34.71496461950011 35.0 34.0 37.0 30.0 39.0 80-81 34.56376767591422 35.0 34.0 37.0 30.0 39.0 82-83 34.32621763647799 35.0 34.0 36.5 30.0 39.0 84-85 34.067388243693074 35.0 34.0 36.0 30.0 37.0 86-87 33.83901027668895 35.0 34.0 36.0 30.0 37.0 88-89 33.63225099378012 35.0 33.0 35.0 29.0 37.0 90-91 33.46400063333759 35.0 33.0 35.0 29.0 36.0 92-93 33.336446764842094 35.0 33.0 35.0 29.0 36.0 94-95 33.27597068226183 35.0 33.0 35.0 29.0 36.0 96-97 33.29575107945092 35.0 33.0 35.0 29.0 35.5 98-99 33.34503493127342 35.0 33.0 35.0 30.0 35.0 100-101 31.870445686654314 33.5 30.5 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 61.0 21 357.0 22 1834.0 23 6085.0 24 15427.0 25 31561.0 26 55469.0 27 86699.0 28 122920.0 29 163675.0 30 209212.0 31 260654.0 32 325258.0 33 417837.0 34 570258.0 35 805953.0 36 1313505.0 37 2450909.0 38 3184141.0 39 1518624.0 40 72700.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.96929789740007 21.833386060934735 15.919588025501444 24.277728016163753 2 13.49548227041126 21.660520781314947 41.74088267511466 23.10311427315912 3 16.874927775815443 26.725936279454338 31.399562185819413 24.999573758910806 4 11.931194182868277 19.033335153110105 38.997511957569465 30.037958706452155 5 12.751213151027294 38.11055161107937 35.985838807158714 13.152396430734617 6 29.299846914866993 38.850962521266844 18.68913901538825 13.160051548477906 7 25.79769512929571 33.026718169219606 23.359828594249997 17.81575810723468 8 23.927366451778013 37.54539037053353 21.140834705772235 17.386408471916223 9 24.926690838124312 17.204433665089546 21.63964011130145 36.22923538548469 10-11 23.683861215969866 27.344986917154866 29.06376014656196 19.9073917203133 12-13 24.54569455970134 24.70768617130518 29.286433495304852 21.460185773688625 14-15 21.642113665616346 26.235366525468883 26.940076727724644 25.182443081190126 16-17 21.173874848383033 29.521432004729814 27.57796638395832 21.726726762928838 18-19 21.181017615726176 28.51958461557273 29.432317478829596 20.867080289871495 20-21 21.94898057554536 27.543756034095736 29.42228846795636 21.084974922402548 22-23 21.600804862694893 27.72104604074531 29.193376538781234 21.484772557778562 24-25 21.5372791962501 27.840545851654408 29.310275018351582 21.31189993374391 26-27 21.57313972695688 27.947916871378325 29.1934774296559 21.28546597200889 28-29 21.27741341823805 27.96132003014071 29.292573566377534 21.46869298524371 30-31 21.638522303945436 27.730240166027155 29.36451151392963 21.266726016097778 32-33 21.399356175968155 27.975464568200092 29.181348107991305 21.44383114784045 34-35 21.41455453118129 28.044611868203457 29.29906753846415 21.241766062151097 36-37 21.660501039128675 27.877667383823063 29.064941075368534 21.39689050167973 38-39 21.470157468815763 27.89243473307757 29.178369869298727 21.459037928807945 40-41 21.664072733406357 27.846439621490997 29.051189439406944 21.438298205695702 42-43 21.67188764276972 27.949938874860248 28.88674228684973 21.491431195520295 44-45 21.66690388345999 28.144670097168063 28.576675040359717 21.61175097901223 46-47 21.85054592100463 27.966875390962 28.26047597105682 21.922102716976553 48-49 21.774273263884368 28.098237590230074 28.278881678327945 21.848607467557617 50-51 21.65156023490806 28.22658555312392 28.244818632252667 21.877035579715358 52-53 21.730549816092555 28.224799422257323 28.238729270815394 21.805921490834727 54-55 21.7698614512804 28.18853319836332 28.11639571997717 21.925209630379115 56-57 21.97613615314834 28.311030922171078 27.906124330302912 21.806708594377668 58-59 21.69934452904291 28.514302706064797 28.155725350125405 21.63062741476689 60-61 21.954411968172604 28.55088128446478 27.873324920203807 21.62138182715881 62-63 21.81725462473299 28.691751648464546 27.775774121148977 21.715219605653484 64-65 21.76897016462794 28.58424153847377 27.870514467587874 21.776273829310412 66-67 21.85685554886432 28.481793321951344 27.791336941969163 21.870014187215173 68-69 21.84807562291822 28.362707915944636 27.86506462314532 21.924151837991825 70-71 21.83036144934984 28.20058808939279 27.934763208275164 22.034287252982203 72-73 21.93018579740603 28.164707437656343 27.942992070461486 21.962114694476142 74-75 21.80823477522132 28.323592570511728 27.906791680735317 21.961380973531632 76-77 21.910172395368317 28.262042255161607 27.815826010345624 22.011959339124452 78-79 21.784796395070266 28.31484673073638 27.805393671104422 22.094963203088927 80-81 21.8348111050547 28.279776785266307 27.865295070756474 22.020117038922518 82-83 21.871238416475403 28.251758633506473 27.963774889512656 21.913228060505467 84-85 22.001817591520876 28.23795619019101 27.858876314775316 21.9013499035128 86-87 21.811532879840893 28.276559852421673 27.904558738810643 22.007348528926787 88-89 21.886663635409747 28.222274142212584 27.893706411108393 21.99735581126928 90-91 21.887984629943507 28.29954449591858 27.899732808165524 21.91273806597239 92-93 21.9129504361316 28.253224975991316 27.912946633688346 21.92087795418874 94-95 21.69596954344268 28.35102737650374 27.98125932303705 21.971743757016526 96-97 21.669336675789935 28.402791518592068 28.02816952752163 21.899702278096367 98-99 21.92217431622873 28.922080230633785 28.06880057451445 21.086944878623033 100-101 22.13331061077693 31.7906192043126 25.3326399361878 20.74343024872267 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2783.0 1 2426.0 2 3202.5 3 4573.0 4 6209.0 5 9483.5 6 12012.5 7 14199.0 8 15776.0 9 15464.5 10 13992.0 11 12761.5 12 14311.5 13 20128.5 14 34041.0 15 52736.5 16 67328.5 17 74951.0 18 75794.0 19 71772.0 20 65844.5 21 60360.5 22 58500.5 23 63805.5 24 75194.5 25 92869.5 26 115780.5 27 140807.5 28 168107.0 29 196957.5 30 222751.5 31 248534.5 32 276542.5 33 303228.5 34 329884.5 35 353182.5 36 377897.0 37 401060.0 38 415428.0 39 426814.5 40 440319.5 41 451293.5 42 456301.0 43 462763.5 44 471500.5 45 482126.5 46 493918.5 47 497398.5 48 485591.0 49 471394.5 50 458215.5 51 437066.5 52 410412.0 53 383099.0 54 357357.0 55 328382.0 56 297981.5 57 266535.0 58 231752.5 59 198130.5 60 165339.0 61 134068.0 62 105844.5 63 79817.5 64 58189.5 65 43365.0 66 32920.0 67 24908.0 68 18741.0 69 13628.0 70 9764.5 71 6929.0 72 4815.5 73 3220.5 74 2150.0 75 1416.5 76 900.0 77 577.0 78 401.0 79 284.0 80 204.0 81 155.0 82 116.5 83 83.0 84 58.0 85 42.0 86 30.0 87 24.5 88 23.5 89 18.5 90 13.5 91 11.5 92 8.0 93 6.0 94 5.0 95 4.5 96 4.0 97 1.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.022973964160960345 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 3.2290991605547715E-4 12-13 0.001713575287867732 14-15 3.013825883184453E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.00829101577347446 26-27 0.026153153729961062 28-29 0.3236739456765827 30-31 0.30888042887244704 32-33 0.31084584822055966 34-35 0.1671896358824124 36-37 0.0306393490708845 38-39 0.029343991989620368 40-41 0.011661194490905944 42-43 0.009044885019786796 44-45 0.00313241834751085 46-47 0.0020911220463014253 48-49 0.0018187922643566115 50-51 0.001967990791093583 52-53 3.20492320794977E-4 54-55 7.95960379339734E-5 56-57 4.251614515182019E-4 58-59 7.963130040345412E-4 60-61 0.0032397875565873665 62-63 0.002770104776540264 64-65 0.0027780640918037293 66-67 0.006534236172598699 68-69 0.009756267862873725 70-71 0.013684762771849714 72-73 0.0130391752729319 74-75 0.010231795405039762 76-77 0.005013883757492231 78-79 0.0022221010593616087 80-81 0.002113650338184054 82-83 2.699249851473777E-4 84-85 1.6380598622424416E-5 86-87 0.0 88-89 5.764018400537498E-4 90-91 0.0022244683804303984 92-93 0.014251369620561604 94-95 4.509060517916547E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 272.0 20-21 994.0 22-23 2003.0 24-25 3944.0 26-27 6498.0 28-29 10248.0 30-31 23107.0 32-33 30357.0 34-35 44237.0 36-37 62274.0 38-39 73458.0 40-41 79044.0 42-43 92419.0 44-45 109618.0 46-47 108674.0 48-49 95578.0 50-51 85074.0 52-53 84011.0 54-55 92282.0 56-57 98742.0 58-59 99071.0 60-61 98753.0 62-63 99653.0 64-65 105891.0 66-67 112520.0 68-69 104291.0 70-71 99520.0 72-73 95786.0 74-75 97300.0 76-77 98433.0 78-79 104777.0 80-81 106457.0 82-83 104566.0 84-85 105973.0 86-87 112846.0 88-89 121319.0 90-91 129695.0 92-93 137603.0 94-95 158994.0 96-97 249544.0 98-99 1015310.0 100-101 7152010.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.00221037342945 #Duplication Level Percentage of deduplicated Percentage of total 1 87.29897554052906 70.71409982118807 2 8.250995809175402 13.366977966502214 3 2.3335242629219213 5.6706186977011015 4 0.9336063598960314 3.024967150810801 5 0.44516562819545163 1.8029699933053926 6 0.25691549716536166 1.2486433889749708 7 0.1447270769221196 0.8206249192103929 8 0.09188287170816963 0.5954172563055988 9 0.060286928323072794 0.4395037005714065 >10 0.18142908246456865 2.128330795478626 >50 0.002105693820423577 0.113152560192827 >100 3.4637018326879557E-4 0.049043382911863644 >500 1.944028165690148E-5 0.0091017994343583 >1k 1.943841354868933E-5 0.016548567412400843 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.610931094812723E-6 2 0.0 8.610931094812723E-6 0.0 0.0 8.610931094812723E-6 3 0.0 8.610931094812723E-6 0.0 0.0 8.610931094812723E-6 4 0.0 8.610931094812723E-5 0.0 1.7221862189625447E-5 8.610931094812723E-6 5 0.0 1.0333117313775269E-4 0.0 1.7221862189625447E-5 1.7221862189625447E-5 6 0.0 1.0333117313775269E-4 0.0 1.7221862189625447E-5 1.7221862189625447E-5 7 0.0 1.0333117313775269E-4 0.0 4.3054655474063615E-5 1.7221862189625447E-5 8 0.0 1.2916396642219085E-4 0.0 4.3054655474063615E-5 2.5832793284438172E-5 9 0.0 1.9805141518069265E-4 0.0 5.1665586568876344E-5 5.1665586568876344E-5 10-11 0.0 1.9805141518069265E-4 0.0 6.458198321109542E-5 5.1665586568876344E-5 12-13 0.0 1.9805141518069265E-4 0.0 8.610931094812723E-5 5.597105211628271E-5 14-15 0.0 3.0138258831844533E-4 0.0 1.0333117313775269E-4 6.458198321109542E-5 16-17 0.0 3.0138258831844533E-4 0.0 1.119421042325654E-4 8.610931094812723E-5 18-19 0.0 3.444372437925089E-4 0.0 1.54996759706629E-4 1.0763663868515905E-4 20-21 0.0 3.831864337191662E-4 0.0 2.1096781182291174E-4 1.2055303532737813E-4 22-23 0.0 4.1763015809841706E-4 0.0 2.583279328443817E-4 1.2485850087478448E-4 24-25 0.0 4.5637934802507434E-4 0.0 3.1860445050807074E-4 1.6360769080144173E-4 26-27 0.0 4.865176068569189E-4 0.0 4.004082959087916E-4 1.7221862189625446E-4 28-29 0.0 4.951285379517316E-4 0.0 6.329034354687352E-4 1.7652408744366083E-4 30-31 0.0 5.252667967835761E-4 0.0 0.001274417802032283 1.808295529910672E-4 32-33 0.0 5.338777278783888E-4 0.0 0.0027770252780771033 1.8944048408587992E-4 34-35 0.0 6.544307632057669E-4 0.0 0.00447337870375521 1.8944048408587992E-4 36-37 8.610931094812723E-6 7.749837985331451E-4 0.0 0.007388178879349316 1.9374594963328628E-4 38-39 8.610931094812723E-6 7.879001951753642E-4 0.0 0.011900306773031184 2.0666234627550537E-4 40-41 8.610931094812723E-6 8.783149716708978E-4 0.0 0.017092698223203258 2.1096781182291174E-4 42-43 8.610931094812723E-6 9.213696271449614E-4 0.0 0.021566076926958465 2.1527327737031808E-4 44-45 8.610931094812723E-6 0.0010505335935671522 0.0 0.027176098535228954 2.1527327737031808E-4 46-47 8.610931094812723E-6 0.001140948370062686 0.0 0.033896930254730284 2.2818967401253717E-4 48-49 8.610931094812723E-6 0.0011452538356100921 0.0 0.04040679416240871 2.3249513955994353E-4 50-51 8.610931094812723E-6 0.001261501405390064 0.0 0.04671430118935903 2.3249513955994353E-4 52-53 8.610931094812723E-6 0.0012658068709374703 0.0 0.05253529060945243 2.368006051073499E-4 54-55 8.610931094812723E-6 0.0012701123364848767 0.0 0.0588815468263294 2.4110607065475626E-4 56-57 8.610931094812723E-6 0.0012830287331270958 0.0 0.06522349757765897 2.454115362021626E-4 58-59 8.610931094812723E-6 0.0012916396642219086 0.0 0.07088949023804575 2.583279328443817E-4 60-61 8.610931094812723E-6 0.001321777923053753 0.0 0.07652103917405327 2.669388639391944E-4 62-63 8.610931094812723E-6 0.0013777489751700357 0.0 0.08162301584772981 2.798552605814135E-4 64-65 8.610931094812723E-6 0.0015585785281611029 0.0 0.08718567733497883 2.841607261288199E-4 66-67 8.610931094812723E-6 0.0015671894592559157 0.0 0.09267945137346933 2.841607261288199E-4 68-69 8.610931094812723E-6 0.0016274659769196047 0.0 0.09819475273969688 3.0138258831844533E-4 70-71 8.610931094812723E-6 0.0016705206323936682 0.0 0.10370144317482963 3.186044505080708E-4 72-73 8.610931094812723E-6 0.0016834370290358873 0.0 0.10830829131055443 3.358263126976962E-4 74-75 8.610931094812723E-6 0.0017178807534151382 0.0 0.11188182771490171 3.5304817488732165E-4 76-77 8.610931094812723E-6 0.0018513501853847356 0.0 0.1152616181696157 3.616591059821344E-4 78-79 8.610931094812723E-6 0.0018987103064062056 0.0 0.11839599708812754 3.616591059821344E-4 80-81 8.610931094812723E-6 0.0019030157719536118 0.0 0.11964888756242278 3.917973648139789E-4 82-83 8.610931094812723E-6 0.0019159321685958308 0.0 0.12004929585833157 4.348520202880425E-4 84-85 8.610931094812723E-6 0.0019546813585224884 0.0 0.12037220577438706 4.391574858354489E-4 86-87 8.610931094812723E-6 0.0019891250829017393 0.0 0.12048845334416704 4.391574858354489E-4 88-89 8.610931094812723E-6 0.0021268999804187425 0.0 0.12057025718956775 4.477684169302616E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 17115 0.0 40.485287 1 GTATCAA 29580 0.0 33.76224 1 CTTATAC 9080 0.0 30.721472 1 TCAACGC 34585 0.0 28.229414 4 ATCAACG 34480 0.0 28.216593 3 CAACGCA 34985 0.0 27.809412 5 AACGCAG 36165 0.0 26.996342 6 TATCAAC 37360 0.0 26.343876 2 ACGCAGA 41915 0.0 23.24243 7 CGCAGAG 41970 0.0 23.232258 8 TATACAC 15140 0.0 22.582668 3 TTATACA 15225 0.0 20.224024 2 TACATGG 31255 0.0 20.152794 2 GTACATG 32075 0.0 20.06247 1 GCAGAGT 48955 0.0 19.77827 9 ACATGGG 32040 0.0 19.069748 3 GAGTACT 28250 0.0 18.779833 12-13 ACATCTC 15355 0.0 18.717545 8 AGAGTAC 42720 0.0 18.648224 10-11 ACACATC 16400 0.0 17.836195 6 >>END_MODULE