##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139054_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12032010 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4299939079173 34.0 31.0 34.0 31.0 34.0 2 32.5663028870488 34.0 31.0 34.0 31.0 34.0 3 32.62066845024231 34.0 31.0 34.0 31.0 34.0 4 36.16692614118506 37.0 35.0 37.0 35.0 37.0 5 36.075667157856415 37.0 35.0 37.0 35.0 37.0 6 36.11219870994123 37.0 35.0 37.0 35.0 37.0 7 36.05671571084133 37.0 35.0 37.0 35.0 37.0 8 36.0297266209054 37.0 35.0 37.0 35.0 37.0 9 37.730311228132294 39.0 38.0 39.0 35.0 39.0 10-11 37.651653547495386 39.0 37.0 39.0 35.0 39.0 12-13 37.591861251777544 39.0 37.0 39.0 35.0 39.0 14-15 38.90671724840654 40.0 38.0 41.0 35.0 41.0 16-17 38.8693336774155 40.0 38.0 41.0 35.0 41.0 18-19 38.86163434039699 40.0 38.0 41.0 35.0 41.0 20-21 38.82589783989424 40.0 38.0 41.0 35.0 41.0 22-23 38.71677061733901 40.0 38.0 41.0 34.0 41.0 24-25 38.57919788468361 40.0 38.0 41.0 34.0 41.0 26-27 38.492040999455625 40.0 38.0 41.0 34.0 41.0 28-29 38.43312449442469 40.0 38.0 41.0 34.0 41.0 30-31 38.35351447928102 40.0 38.0 41.0 34.0 41.0 32-33 38.24031153928024 40.0 38.0 41.0 34.0 41.0 34-35 38.12453134214896 40.0 38.0 41.0 33.5 41.0 36-37 38.27579135228687 40.0 38.0 41.0 34.0 41.0 38-39 38.33098336018586 40.0 38.0 41.0 34.0 41.0 40-41 38.26432736134701 40.0 38.0 41.0 33.5 41.0 42-43 38.220952799202735 40.0 38.0 41.0 33.0 41.0 44-45 38.1784928396184 40.0 38.0 41.0 33.0 41.0 46-47 38.06694634686529 40.0 37.0 41.0 33.0 41.0 48-49 37.96656089114722 40.0 37.0 41.0 33.0 41.0 50-51 37.86505092457638 40.0 37.0 41.0 33.0 41.0 52-53 37.767312357267244 40.0 36.5 41.0 33.0 41.0 54-55 37.60534033475831 39.5 36.0 41.0 32.5 41.0 56-57 37.41051895007021 39.0 36.0 41.0 32.0 41.0 58-59 37.24780642371291 39.0 35.0 41.0 32.0 41.0 60-61 37.05448354629745 39.0 35.0 40.5 32.0 41.0 62-63 36.79027201672423 38.0 35.0 40.0 31.0 41.0 64-65 36.427569098780694 37.5 35.0 40.0 31.0 41.0 66-67 36.09574966593088 37.0 35.0 40.0 31.0 41.0 68-69 35.78728045678082 36.5 34.5 39.0 31.0 41.0 70-71 35.46264968675001 36.0 34.0 39.0 30.0 40.5 72-73 35.14756766797241 35.5 34.0 38.5 30.0 40.0 74-75 34.83095651073245 35.0 34.0 37.5 30.0 39.5 76-77 33.900316852614964 35.0 32.5 36.0 29.0 39.0 78-79 34.24309648277264 35.0 33.5 36.5 29.5 39.0 80-81 34.13148399327213 35.0 34.0 36.0 30.0 38.5 82-83 33.943080588474146 35.0 34.0 36.0 30.0 37.0 84-85 33.73684176167653 35.0 33.0 35.0 29.5 37.0 86-87 33.558927916720066 35.0 33.0 35.0 29.0 36.5 88-89 33.39677382822282 35.0 33.0 35.0 29.0 36.0 90-91 33.265565093674006 35.0 33.0 35.0 29.0 36.0 92-93 33.1649952053549 35.0 33.0 35.0 29.0 35.5 94-95 33.130867001458114 35.0 33.0 35.0 29.0 35.0 96-97 33.17293888053824 35.0 33.0 35.0 29.0 35.0 98-99 33.237280683369235 34.0 33.0 35.0 29.5 35.0 100-101 31.752500664989228 33.0 30.0 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 19.0 20 84.0 21 476.0 22 2006.0 23 6749.0 24 17071.0 25 35328.0 26 62490.0 27 96678.0 28 137218.0 29 181372.0 30 231530.0 31 287166.0 32 360364.0 33 463475.0 34 636521.0 35 916744.0 36 1524269.0 37 2762439.0 38 2973700.0 39 1275958.0 40 60350.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.43294922734849 20.638697992995183 15.285410773878244 24.64294200577809 2 14.37333693120231 20.941534379724644 40.34296802410572 24.34216066496732 3 17.54259824772405 25.798659226401842 30.804730947259102 25.85401157861501 4 12.763296636496865 17.959103920218144 36.85800933160871 32.41959011167628 5 13.645019713665441 37.491477940217635 34.84270997470165 14.020792371415281 6 31.349353212751087 36.79314900778415 17.662154341806094 14.195343437658664 7 27.291734904786058 32.43277992893789 21.937051410117796 18.338433756158263 8 25.505065238476366 36.04501658492637 20.0990940000881 18.35082417650916 9 25.942606430679493 16.420722722138695 20.439951429561646 37.196719417620166 10-11 25.038964983003183 26.123293991160374 27.869593450176062 20.968147575660385 12-13 25.799612476839496 23.675183349586103 28.16832348484603 22.356880688728374 14-15 22.886928885308624 24.987151977755996 25.752606121630162 26.373313015305218 16-17 22.423767932373725 28.255873291328715 26.33737006535068 22.982988710946884 18-19 22.539039611835427 27.24020757961471 28.240481016887454 21.980271791662407 20-21 23.295557619057337 26.19540471554257 28.158580116458694 22.350457548941407 22-23 23.11518344412424 26.243233304897412 28.091999202209006 22.54958404876934 24-25 23.01207766373688 26.53159469358957 28.003353330945185 22.452974311728365 26-27 22.87245508403932 26.47468716625963 28.1975406747115 22.455317074989548 28-29 22.54325495197626 26.475895099908836 28.25400768043977 22.726842267675135 30-31 22.92799120605448 26.299282488895372 28.280070033359994 22.492656271690155 32-33 22.613065284496177 26.677602444303528 28.05352731236669 22.65580495883361 34-35 22.67115389752059 26.647962451801032 28.22939592307249 22.451487727605883 36-37 23.005011458771214 26.45069374878299 27.96270892277608 22.581585869669716 38-39 22.826827872484284 26.450936498886318 28.03270274143624 22.68953288719316 40-41 22.818668949389426 26.394939348069368 28.077438726336982 22.70895297620422 42-43 22.90068420271228 26.558724087785627 27.760487246056126 22.780104463445966 44-45 22.88680574086873 26.6627318411645 27.502689455835426 22.947772962131342 46-47 23.16183063192112 26.548863063350105 27.169900417927845 23.11940588680093 48-49 23.081557841731787 26.780241371374654 26.977762918272774 23.16043786862079 50-51 22.959329402196467 26.837725936889257 27.08975275453664 23.113191906377637 52-53 23.059066634039308 26.827675430222904 27.02980651774952 23.083451417988275 54-55 23.033733866941255 26.81858554945228 26.859375708952587 23.288304874653885 56-57 23.187367713794814 26.95390297256533 26.69352531101329 23.165204002626567 58-59 22.917881084147464 27.108768229952325 26.95612578513381 23.0172249007664 60-61 23.242658182178776 27.22186706088403 26.66210466030283 22.87337009663436 62-63 23.134679310433683 27.44085929009169 26.53626487186211 22.888196527612514 64-65 22.992380800703774 27.258254220357614 26.61872012448984 23.13064485444877 66-67 23.137883482539127 27.103386905147836 26.530012359595318 23.228717252717722 68-69 23.06133426817645 26.99501723257338 26.67563811331056 23.268010385939608 70-71 23.07060103295742 26.864517311885983 26.69962330989353 23.36525834526307 72-73 23.212298862310003 26.875566773972192 26.645943708625875 23.266190655091926 74-75 23.00587331134379 27.031662660312257 26.666820416061064 23.295643612282888 76-77 23.19405327991829 26.85678821459257 26.63497774899866 23.314180756490487 78-79 23.045938216280394 26.833256598301205 26.64209383005239 23.47871135536601 80-81 23.174014209444195 26.90510324365814 26.58308114513959 23.33780140175807 82-83 23.087392851220127 26.83864492729789 26.744499114573454 23.329463106908527 84-85 23.202800380001452 26.80921994241437 26.67017914046839 23.317800537115787 86-87 23.133470546907812 26.826838329730368 26.750781393438082 23.288909729923738 88-89 23.10028563575239 26.73082506651087 26.741898233887852 23.426991063848888 90-91 23.21824022973749 26.730408910029645 26.70002222443899 23.351328635793877 92-93 23.269069547625943 26.656819009107142 26.74538057126574 23.32873087200117 94-95 22.99245194702209 26.60510879334111 26.916767824102966 23.485671435533835 96-97 23.095505017041642 26.696622455789022 26.845414047954037 23.362458479215302 98-99 23.330537259896424 27.292654590383925 26.849141632751788 22.52766651696786 100-101 23.62776234761097 30.034431805114252 23.911417939490207 22.426387907784566 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3428.0 1 2962.5 2 3659.0 3 5024.0 4 6613.5 5 9992.0 6 12884.0 7 16252.0 8 19385.0 9 19716.5 10 17669.5 11 15452.0 12 16602.5 13 22721.0 14 38038.0 15 58879.0 16 74892.0 17 82305.0 18 81168.5 19 74177.5 20 65136.0 21 56356.0 22 50432.5 23 51274.0 24 57640.0 25 68958.0 26 84618.0 27 100499.5 28 119327.5 29 140309.0 30 160558.5 31 183126.0 32 206879.0 33 233093.0 34 254796.0 35 270970.5 36 293448.5 37 318324.5 38 340772.0 39 359054.5 40 374683.5 41 393629.5 42 410701.0 43 430585.5 44 456452.5 45 484686.5 46 514158.0 47 533328.5 48 535592.0 49 532879.0 50 530108.0 51 525157.0 52 513941.0 53 496237.0 54 479356.5 55 456273.0 56 428377.0 57 395573.0 58 357051.0 59 313439.0 60 265202.0 61 220196.5 62 178908.5 63 139863.5 64 105719.5 65 79654.0 66 60952.5 67 47149.0 68 36158.5 69 26409.0 70 18904.5 71 13879.0 72 9834.0 73 6664.0 74 4519.0 75 2948.5 76 1852.5 77 1145.0 78 702.0 79 457.0 80 333.0 81 234.5 82 163.0 83 115.5 84 80.5 85 54.0 86 34.5 87 29.0 88 24.0 89 16.0 90 12.0 91 10.5 92 8.5 93 4.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 8.311163305216669E-6 2 0.022165872535012853 3 8.311163305216669E-6 4 8.311163305216669E-6 5 8.311163305216669E-6 6 8.311163305216669E-6 7 8.311163305216669E-6 8 0.0 9 0.0 10-11 4.404916551764834E-4 12-13 0.0017702777840111503 14-15 2.077790826304167E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.007921510760592691 26-27 0.026733694214630545 28-29 0.3249306414628937 30-31 0.3108149769247659 32-33 0.31287831119271375 34-35 0.16480515582779057 36-37 0.025216502012497564 38-39 0.023655428134644052 40-41 0.008795453847125538 42-43 0.006141293091406525 44-45 0.0018189120665845103 46-47 0.0015535457179540384 48-49 0.001432226869347609 50-51 0.0015348426280658368 52-53 1.1732117669349848E-4 54-55 1.8203794298762768E-5 56-57 1.6080610353808806E-4 58-59 1.9490971016508437E-4 60-61 0.0019504189438940892 62-63 8.715756078576709E-4 64-65 9.576639282426249E-4 66-67 0.006502586983003149 68-69 0.009856862661635385 70-71 0.01377853919610011 72-73 0.013417240893824902 74-75 0.01039474381745877 76-77 0.005201495160815882 78-79 0.002218795070894909 80-81 0.002004660468242505 82-83 3.4006724936127137E-4 84-85 1.076125436193994E-5 86-87 0.0 88-89 6.523341122644894E-4 90-91 0.00233522372313363 92-93 0.014941638860360455 94-95 4.357710890982798E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 646.0 20-21 2360.0 22-23 3290.0 24-25 5479.0 26-27 9189.0 28-29 12945.0 30-31 26994.0 32-33 34748.0 34-35 49261.0 36-37 68360.0 38-39 81430.0 40-41 87075.0 42-43 102669.0 44-45 122908.0 46-47 121000.0 48-49 105827.0 50-51 94551.0 52-53 91883.0 54-55 101409.0 56-57 108546.0 58-59 109983.0 60-61 109468.0 62-63 110378.0 64-65 119829.0 66-67 125927.0 68-69 116880.0 70-71 110597.0 72-73 105766.0 74-75 109046.0 76-77 109339.0 78-79 117103.0 80-81 118311.0 82-83 116649.0 84-85 120053.0 86-87 124672.0 88-89 134790.0 90-91 144919.0 92-93 150381.0 94-95 171419.0 96-97 258856.0 98-99 1055960.0 100-101 7161114.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.41023579718166 #Duplication Level Percentage of deduplicated Percentage of total 1 87.23693436253066 70.1474246231435 2 8.149022470362437 13.10529636716751 3 2.403248288115296 5.797372845795723 4 0.9736191865212667 3.1315579345934097 5 0.45864781396845977 1.843998943453288 6 0.25313942177986254 1.2213000356928583 7 0.15016362603303204 0.8452284804233139 8 0.09968464085926808 0.6412532381480891 9 0.06491985717111412 0.4698198920743777 >10 0.20657637046290067 2.5105514429841587 >50 0.0030723380995023595 0.16868538519419915 >100 9.511124156018053E-4 0.10720237961970291 >500 2.051168059924444E-5 0.010308431709885761 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.4933489915650003E-5 0.0 0.0 0.0 3 0.0 2.4933489915650003E-5 0.0 0.0 0.0 4 0.0 9.973395966260001E-5 0.0 8.311163305216667E-6 0.0 5 0.0 1.0804512296781669E-4 0.0 8.311163305216667E-6 0.0 6 0.0 1.0804512296781669E-4 0.0 1.6622326610433334E-5 2.4933489915650003E-5 7 0.0 1.0804512296781669E-4 0.0 1.6622326610433334E-5 2.4933489915650003E-5 8 0.0 1.4128977618868335E-4 0.0 2.4933489915650003E-5 2.4933489915650003E-5 9 0.0 2.1609024593563338E-4 0.0 3.324465322086667E-5 2.4933489915650003E-5 10-11 0.0 2.1609024593563338E-4 0.0 7.064488809434167E-5 2.4933489915650003E-5 12-13 0.0 2.1609024593563338E-4 0.0 9.973395966260001E-5 3.324465322086667E-5 14-15 0.0 3.075130422930167E-4 0.0 1.1635628627303335E-4 4.9866979831300006E-5 16-17 0.0 3.158242055982334E-4 0.0 1.7453442940955003E-4 6.648930644173334E-5 18-19 0.0 3.4491327716649177E-4 0.0 2.9920187898780005E-4 7.480046974695E-5 20-21 0.0 3.740023487347501E-4 0.0 4.695807267447418E-4 8.726721470477501E-5 22-23 0.0 4.072470019556167E-4 0.0 6.690486460699418E-4 1.2051186792564169E-4 24-25 0.0 4.654251450921334E-4 0.0 8.518942387847084E-4 1.3297861288346667E-4 26-27 0.0 4.737363083973501E-4 0.0 0.0010222730865416501 1.4128977618868335E-4 28-29 0.0 4.778918900499584E-4 0.0 0.0016372991711276837 1.4128977618868335E-4 30-31 0.0 5.734702680599501E-4 0.0 0.0025182824814806506 1.4128977618868335E-4 32-33 0.0 5.817814313651668E-4 0.0 0.0041888263058292 1.579121027991167E-4 34-35 0.0 6.648930644173334E-4 0.0 0.0064328403982377 1.703788477569417E-4 36-37 0.0 7.563158607747168E-4 0.0 0.0096741940872722 1.7453442940955003E-4 38-39 0.0 7.812493506903667E-4 0.0 0.014731536958496544 1.9946791932520002E-4 40-41 0.0 8.685165653951419E-4 0.0 0.020208593576634327 1.9946791932520002E-4 42-43 0.0 8.851388920055751E-4 0.0 0.025386448315784314 2.0362350097780836E-4 44-45 0.0 9.433170351420918E-4 0.0 0.031482686600160736 2.077790826304167E-4 46-47 0.0 9.890284333207834E-4 0.0 0.038455752613237526 2.2440140924085002E-4 48-49 0.0 9.931840149733917E-4 0.0 0.04537895164648301 2.327125725460667E-4 50-51 0.0 0.0011136958828990334 0.0 0.051786858554805054 2.3686815419867504E-4 52-53 0.0 0.0011261626278568585 0.0 0.057941274982318006 2.451793175038917E-4 54-55 0.0 0.001134473791162075 0.0 0.06463591702467003 2.534904808091084E-4 56-57 0.0 0.0011386293728146836 0.0 0.07146769326155814 2.61801644114325E-4 58-59 0.0 0.0011386293728146836 0.0 0.07783404435335409 2.6595722576693335E-4 60-61 0.0 0.0011386293728146836 0.0 0.0839718384542566 2.6595722576693335E-4 62-63 0.0 0.0011635628627303335 0.0 0.0898021195128661 2.6595722576693335E-4 64-65 0.0 0.0013297861288346668 0.0 0.09595653594037903 2.6595722576693335E-4 66-67 0.0 0.0013464084554451001 0.0 0.10238937633861674 2.6595722576693335E-4 68-69 0.0 0.0013838086903185751 0.0 0.10819887948896319 2.701128074195417E-4 70-71 0.0 0.0014045865985816168 0.0 0.11402084938426747 2.7842397072475836E-4 72-73 0.0 0.0014045865985816168 0.0 0.11848809966082142 3.075130422930167E-4 74-75 0.0 0.0014212089251920503 0.0 0.12230707919956849 3.075130422930167E-4 76-77 0.0 0.0014669203233707419 0.0 0.12557752196017125 3.075130422930167E-4 78-79 0.0 0.0014960093949390003 0.0 0.12847396237203923 3.075130422930167E-4 80-81 0.0 0.0014960093949390003 0.0 0.12976219268434785 3.2413536890345E-4 82-83 0.0 0.0015043205582442169 0.0 0.13031072946249214 3.4906885881910005E-4 84-85 0.0 0.001516787303202042 0.0 0.1306390204130482 3.532244404717084E-4 86-87 0.0 0.0015292540481598668 0.0 0.13077199902593167 3.573800221243167E-4 88-89 0.0 0.001604054517906817 0.0 0.1308010880974999 3.573800221243167E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 9275 0.0 33.860092 1 GGTATCA 27780 0.0 30.632849 1 GTATCAA 42250 0.0 28.45394 1 TATACAC 13195 0.0 26.706549 3 TCAACGC 46360 0.0 25.04319 4 ATCAACG 46490 0.0 24.96398 3 TTATACA 13360 0.0 24.739132 2 CAACGCA 47255 0.0 24.569387 5 AACGCAG 48365 0.0 24.128075 6 TATCAAC 52190 0.0 22.71114 2 GTACATG 39835 0.0 21.595758 1 TACACAT 16310 0.0 20.985456 5 ACGCAGA 55600 0.0 20.943539 7 TACATGG 40680 0.0 20.867012 2 CGCAGAG 57085 0.0 20.369143 8 ACATGGG 41885 0.0 19.829292 3 GAGTACT 32085 0.0 18.98775 12-13 AGAGTAC 51090 0.0 18.917852 10-11 ACACATC 17660 0.0 18.640717 6 ACATCTC 17525 0.0 18.59227 8 >>END_MODULE