##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139053_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13371501 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4459058859585 34.0 31.0 34.0 31.0 34.0 2 32.574995507235876 34.0 31.0 34.0 31.0 34.0 3 32.632392204884106 34.0 31.0 34.0 31.0 34.0 4 36.170565144481536 37.0 35.0 37.0 35.0 37.0 5 36.08425718249582 37.0 35.0 37.0 35.0 37.0 6 36.119581115089474 37.0 36.0 37.0 35.0 37.0 7 36.06816871194939 37.0 35.0 37.0 35.0 37.0 8 36.039266421922264 37.0 35.0 37.0 35.0 37.0 9 37.74521386940778 39.0 38.0 39.0 35.0 39.0 10-11 37.66682603546154 39.0 37.0 39.0 35.0 39.0 12-13 37.614496569981185 39.0 37.0 39.0 35.0 39.0 14-15 38.94463489925327 40.0 38.0 41.0 35.0 41.0 16-17 38.91509083385627 40.0 38.0 41.0 35.0 41.0 18-19 38.90822746825506 40.0 38.0 41.0 35.0 41.0 20-21 38.875379487054786 40.0 38.0 41.0 35.0 41.0 22-23 38.77102307647309 40.0 38.0 41.0 34.5 41.0 24-25 38.64513070668637 40.0 38.0 41.0 34.0 41.0 26-27 38.57611351528921 40.0 38.0 41.0 34.0 41.0 28-29 38.52234014117512 40.0 38.0 41.0 34.0 41.0 30-31 38.453448129427514 40.0 38.0 41.0 34.0 41.0 32-33 38.347705974514355 40.0 38.0 41.0 34.0 41.0 34-35 38.23704275665712 40.0 38.0 41.0 34.0 41.0 36-37 38.37799783909328 40.0 38.0 41.0 34.0 41.0 38-39 38.443586190602616 40.0 38.0 41.0 34.0 41.0 40-41 38.382212185561414 40.0 38.0 41.0 34.0 41.0 42-43 38.34728277768966 40.0 38.0 41.0 34.0 41.0 44-45 38.31484647828606 40.0 38.0 41.0 33.0 41.0 46-47 38.223738858799926 40.0 38.0 41.0 33.0 41.0 48-49 38.14915214332757 40.0 38.0 41.0 33.0 41.0 50-51 38.081028755759604 40.0 37.0 41.0 33.0 41.0 52-53 38.00871069763173 40.0 37.0 41.0 33.0 41.0 54-55 37.88950635842703 40.0 37.0 41.0 33.0 41.0 56-57 37.73655635571997 40.0 36.5 41.0 33.0 41.0 58-59 37.61362285636676 39.5 36.0 41.0 33.0 41.0 60-61 37.4689439416948 39.0 36.0 41.0 32.0 41.0 62-63 37.252281683673104 39.0 35.5 41.0 32.0 41.0 64-65 36.9259541733982 38.5 35.0 40.0 31.5 41.0 66-67 36.62939248068301 38.0 35.0 40.0 31.0 41.0 68-69 36.34901344255709 37.5 35.0 40.0 31.0 41.0 70-71 36.03772362187644 37.0 35.0 39.5 31.0 41.0 72-73 35.72958454463944 36.5 34.0 39.0 30.5 41.0 74-75 35.401435422058796 36.0 34.0 39.0 30.0 40.0 76-77 34.41788025193442 35.0 33.5 37.0 29.0 39.0 78-79 34.7421548317257 35.0 34.0 37.0 30.0 39.0 80-81 34.58669818785559 35.0 34.0 37.0 30.0 39.0 82-83 34.34471478467034 35.0 34.0 36.5 30.0 39.0 84-85 34.08424101811814 35.0 34.0 36.0 30.0 37.0 86-87 33.85264260093233 35.0 34.0 36.0 30.0 37.0 88-89 33.64124809902923 35.0 33.0 35.0 29.0 37.0 90-91 33.47031653233378 35.0 33.0 35.0 29.0 36.0 92-93 33.33939219597063 35.0 33.0 35.0 29.0 36.0 94-95 33.28097574184106 35.0 33.0 35.0 29.0 36.0 96-97 33.30229329181654 35.0 33.0 35.0 29.0 35.5 98-99 33.35145750402772 35.0 33.0 35.0 30.0 35.0 100-101 31.88250334671359 33.5 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 3.0 18 4.0 19 22.0 20 76.0 21 471.0 22 1986.0 23 7066.0 24 17394.0 25 35970.0 26 63611.0 27 99361.0 28 142670.0 29 189345.0 30 241826.0 31 302770.0 32 377781.0 33 484941.0 34 658311.0 35 922801.0 36 1482565.0 37 2768405.0 38 3673654.0 39 1809148.0 40 91317.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.15610066185544 21.92475040197435 15.77213476423737 24.14701417193284 2 13.529189512942985 21.867571399280862 41.803238160223756 22.800000927552396 3 16.91974722357252 26.79987286392701 31.45331488613843 24.82706502636204 4 11.880409826870583 18.970751224619526 39.329536701192836 29.819302247317054 5 12.63585985117601 38.28337882810455 36.110959877351085 12.96980144336836 6 29.260135362524775 38.9898515499383 18.79267097932169 12.957342108215233 7 25.77187301349886 33.159914744045174 23.51997158134839 17.54824066110758 8 23.815157326017474 37.75452733391711 21.177495331301998 17.252820008763415 9 25.045804506165766 17.219570188866605 21.74345273578486 35.99117256918277 10-11 23.64030786199189 27.389763979153788 29.291188851228206 19.678739307626117 12-13 24.501916775460128 24.808585143783308 29.497749449576066 21.191748631180495 14-15 21.52747370021472 26.352864604464255 27.215393310113296 24.90426838520773 16-17 21.033264779568487 29.551953782298174 27.850779643271135 21.564001794862207 18-19 21.05620162285458 28.73003776689227 29.655479938675537 20.55828067157761 20-21 21.85718111842416 27.737601354866054 29.593896939921272 20.811320586788515 22-23 21.545232234333263 27.721017638593192 29.439818680734636 21.29393144633891 24-25 21.40277275321006 27.920329581211277 29.46475604509281 21.212141620485852 26-27 21.413253111460296 27.993412663696933 29.387619120211962 21.205715104630812 28-29 21.26377825390606 28.104904178504793 29.466083513278086 21.165234054311068 30-31 21.52814084351696 28.03824424254959 29.31564169838552 21.11797321554793 32-33 21.43229416634388 28.013492403821438 29.278888781733308 21.27532464810137 34-35 21.422525542526778 28.0559836803312 29.298830355015927 21.2226604221261 36-37 21.43440417607843 28.066662753644316 29.247495507913456 21.251437562363794 38-39 21.38649763391836 28.056312575389857 29.29120546523035 21.265984325461424 40-41 21.580879404109698 28.027756643671086 29.136892114121416 21.2544718380978 42-43 21.52744039395899 28.135444857486565 28.93661499629861 21.400499752255836 44-45 21.601268714364895 28.26079561560994 28.695392630273602 21.44254303975156 46-47 21.654097974625483 28.142773318960568 28.472332934885834 21.73079577152811 48-49 21.636390993165193 28.318162204041737 28.397479943480196 21.647966859312877 50-51 21.597677708559736 28.353891763353623 28.354413060695894 21.694017467390747 52-53 21.676820415816817 28.286311431576966 28.292957036849113 21.743911115757104 54-55 21.716806828277704 28.272525312374686 28.266725746433274 21.74394211291433 56-57 21.782281016042816 28.425019820524998 28.13452027174751 21.65817889168468 58-59 21.62715441668648 28.520200567774616 28.248463850534435 21.60418116500447 60-61 21.801946254665545 28.520994824992197 28.110398937762216 21.566659982580045 62-63 21.761635489279207 28.584892202706246 28.025562912484897 21.62790939552964 64-65 21.692147943705045 28.499579607384806 28.09316023307007 21.71511221584008 66-67 21.791506483870513 28.506649471960934 27.975546905466427 21.726297138702126 68-69 21.748893516461436 28.439700082348846 28.07464404997534 21.736762351214377 70-71 21.708096892972247 28.24381432681859 28.15751865686368 21.890570123345483 72-73 21.780494505555716 28.266053249062683 28.122918513689264 21.830533731692334 74-75 21.689300017372513 28.349641792090548 28.079377168806168 21.881681021730774 76-77 21.752682861532662 28.286238833424203 28.05217614443961 21.908902160603525 78-79 21.70517269667392 28.286439668977238 28.058061298994886 21.95032633535396 80-81 21.733670705357273 28.27908506435819 28.0899326938714 21.897311536413135 82-83 21.73379367230307 28.241781653213927 28.16747068874094 21.856953985742063 84-85 21.878939940216323 28.214386471107982 28.122765751971933 21.783907836703754 86-87 21.75451041809874 28.221137153774023 28.11316884309899 21.911183585028247 88-89 21.80450313777579 28.161137826640477 28.124508111225982 21.90985092435775 90-91 21.792573682137412 28.209223967730026 28.175812046680814 21.82239030345175 92-93 21.874704784839736 28.096128146870402 28.154416792831526 21.874750275458332 94-95 21.64388366371259 28.15782192434603 28.254513400314334 21.943781011627046 96-97 21.61591092383414 28.19530304815961 28.3407501148598 21.84803591314645 98-99 21.87973784190344 28.734972271697636 28.34384267620847 21.041447210190455 100-101 22.08158183873881 31.631158690692875 25.616761191639846 20.670498278928466 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2246.0 1 2096.5 2 3097.5 3 4505.5 4 6190.5 5 9605.0 6 12453.5 7 15034.5 8 17148.5 9 17451.5 10 16263.0 11 14967.0 12 16478.5 13 22663.0 14 37983.0 15 59206.5 16 76245.0 17 85069.0 18 85805.5 19 80982.0 20 74444.0 21 69157.5 22 67734.5 23 74334.5 24 88928.5 25 110323.5 26 137878.5 27 166927.5 28 196539.0 29 227919.0 30 258284.0 31 289330.0 32 323732.0 33 356393.0 34 388124.5 35 419334.5 36 451396.5 37 477956.0 38 494176.0 39 505778.0 40 519140.5 41 532777.0 42 539575.0 43 548416.5 44 559456.0 45 570005.0 46 578657.0 47 574319.0 48 556552.5 49 536815.0 50 517270.0 51 491603.0 52 460032.5 53 428858.5 54 399802.0 55 367142.5 56 331844.0 57 295884.5 58 257827.5 59 220546.0 60 183157.5 61 147742.5 62 116192.5 63 88400.5 64 65475.0 65 48527.5 66 37078.0 67 28316.0 68 21207.5 69 15097.5 70 10563.0 71 7362.0 72 4995.0 73 3349.0 74 2218.5 75 1468.0 76 970.5 77 631.5 78 421.0 79 287.5 80 209.5 81 147.0 82 109.5 83 80.5 84 51.5 85 34.5 86 26.0 87 21.5 88 15.0 89 9.0 90 5.0 91 4.0 92 3.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.4785919695926425E-6 2 0.022316118437264446 3 7.4785919695926425E-6 4 7.4785919695926425E-6 5 7.4785919695926425E-6 6 7.4785919695926425E-6 7 7.4785919695926425E-6 8 0.0 9 0.0 10-11 4.113225583275954E-4 12-13 0.0016191151614168074 14-15 2.991436787837057E-5 16-17 7.4785919695926425E-6 18-19 7.4785919695926425E-6 20-21 3.739583343850912E-6 22-23 0.0 24-25 0.008324219092847928 26-27 0.02640885792618305 28-29 0.3283596534681834 30-31 0.314120929395353 32-33 0.3156277786269299 34-35 0.1691492423358608 36-37 0.02910441314214167 38-39 0.02749350056692969 40-41 0.010408348054852263 42-43 0.007889958596834007 44-45 0.0027158166355419275 46-47 0.001913078227894381 48-49 0.0018047212860396182 50-51 0.001856586064633415 52-53 2.2232814923376826E-4 54-55 2.852912860711094E-5 56-57 1.562530518174183E-4 58-59 3.4443159719197786E-4 60-61 0.002421125044867259 62-63 0.002012467659940656 64-65 0.0021303081761868178 66-67 0.007347538891584713 68-69 0.011017600595142346 70-71 0.015144646585673596 72-73 0.014543083193342047 74-75 0.01130121363327985 76-77 0.005643475184661108 78-79 0.0025357856420779525 80-81 0.0022074119678053153 82-83 3.016546606540608E-4 84-85 1.9084664198415237E-5 86-87 0.0 88-89 5.682791014625594E-4 90-91 0.0023073037152114917 92-93 0.015509894999678583 94-95 4.5771512006356166E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 479.0 20-21 1985.0 22-23 2996.0 24-25 5327.0 26-27 8525.0 28-29 12502.0 30-31 27434.0 32-33 35774.0 34-35 51787.0 36-37 72719.0 38-39 87172.0 40-41 92515.0 42-43 108845.0 44-45 128321.0 46-47 127832.0 48-49 112479.0 50-51 101264.0 52-53 99330.0 54-55 106992.0 56-57 110600.0 58-59 112194.0 60-61 110620.0 62-63 111940.0 64-65 121164.0 66-67 126501.0 68-69 123288.0 70-71 120028.0 72-73 116655.0 74-75 118503.0 76-77 119829.0 78-79 126894.0 80-81 129020.0 82-83 128182.0 84-85 131364.0 86-87 137744.0 88-89 148525.0 90-91 160060.0 92-93 166071.0 94-95 189769.0 96-97 285719.0 98-99 1158803.0 100-101 8133750.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.8054338139806 #Duplication Level Percentage of deduplicated Percentage of total 1 88.78026498678653 74.40268621337799 2 7.664493338803001 12.846523784455002 3 1.9788621145074319 4.975181938930389 4 0.7414121057454328 2.485374526277314 5 0.34378646699413673 1.4405587002909674 6 0.17891789839640207 0.8996575255317708 7 0.09167022080611342 0.5377723835735808 8 0.059484977827031216 0.3988131497767495 9 0.03934718742840485 0.29677573006177255 >10 0.1190846344774509 1.4958281757681804 >50 0.002163729880800516 0.11796378731450258 >100 4.6801882442649745E-4 0.07134366108941585 >500 2.9548398937394647E-5 0.016801787214797116 >1k 1.4771123930528774E-5 0.014718636337635425 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 7.478591969592643E-6 0.0 0.0 0.0 2 0.0 2.243577590877793E-5 0.0 7.478591969592643E-6 0.0 3 0.0 2.243577590877793E-5 0.0 7.478591969592643E-6 0.0 4 0.0 6.73073277263338E-5 0.0 7.478591969592643E-6 0.0 5 0.0 6.73073277263338E-5 0.0 7.478591969592643E-6 0.0 6 0.0 6.73073277263338E-5 0.0 7.478591969592643E-6 0.0 7 0.0 7.478591969592643E-5 0.0 2.243577590877793E-5 0.0 8 0.0 8.226451166551907E-5 0.0 2.243577590877793E-5 1.4957183939185287E-5 9 0.0 1.6452902333103815E-4 0.0 2.9914367878370574E-5 1.4957183939185287E-5 10-11 7.478591969592643E-6 1.6452902333103815E-4 0.0 2.9914367878370574E-5 1.4957183939185287E-5 12-13 7.478591969592643E-6 1.6452902333103815E-4 0.0 4.861084780235218E-5 1.4957183939185287E-5 14-15 7.478591969592643E-6 2.729686068901315E-4 0.0 9.348239961990804E-5 1.869647992398161E-5 16-17 7.478591969592643E-6 2.767079028749278E-4 0.0 1.3087535946787124E-4 2.243577590877793E-5 18-19 7.478591969592643E-6 3.1784015870768735E-4 0.0 2.1687916711818665E-4 2.243577590877793E-5 20-21 7.478591969592643E-6 3.627117105252432E-4 0.0 3.3653663863166894E-4 2.243577590877793E-5 22-23 7.478591969592643E-6 4.3749763022116965E-4 0.0 5.833301736282261E-4 2.243577590877793E-5 24-25 7.478591969592643E-6 4.935870699931145E-4 0.0 7.590770849136533E-4 2.617507189357425E-5 26-27 7.478591969592643E-6 5.160228459018924E-4 0.0 9.011703323359135E-4 2.9914367878370574E-5 28-29 7.478591969592643E-6 5.160228459018924E-4 0.0 0.0016303330493711962 2.9914367878370574E-5 30-31 7.478591969592643E-6 5.608943977194482E-4 0.0 0.0026175071893574254 2.9914367878370574E-5 32-33 7.478591969592643E-6 5.683729896890409E-4 0.0 0.004580637581375494 3.7392959847963214E-5 34-35 7.478591969592643E-6 6.207231334761894E-4 0.0 0.007332759426185586 4.487155181755586E-5 36-37 7.478591969592643E-6 6.768125732481342E-4 0.0 0.011169277106586613 4.487155181755586E-5 38-39 7.478591969592643E-6 7.142055330960974E-4 0.0 0.016965185883020914 4.487155181755586E-5 40-41 7.478591969592643E-6 8.301237086247834E-4 0.0 0.023396774976870587 5.23501437871485E-5 42-43 7.478591969592643E-6 8.712559644575429E-4 0.0 0.0290767655777762 5.23501437871485E-5 44-45 7.478591969592643E-6 9.98392027940618E-4 0.0 0.03551209396761067 5.23501437871485E-5 46-47 7.478591969592643E-6 0.0010918744275605259 0.0 0.04316643284848874 5.6089439771944824E-5 48-49 7.478591969592643E-6 0.0010918744275605259 0.0 0.05067493918595975 5.982873575674115E-5 50-51 7.478591969592643E-6 0.0012190104910436007 0.0 0.05755150450200019 5.982873575674115E-5 52-53 7.478591969592643E-6 0.0012339676749827861 0.0 0.06448415925781256 6.356803174153747E-5 54-55 7.478591969592643E-6 0.0012489248589219715 0.0 0.07172343628437824 6.73073277263338E-5 56-57 7.478591969592643E-6 0.0012638820428611567 0.0 0.07809893593845597 6.73073277263338E-5 58-59 7.478591969592643E-6 0.0012713606348307494 0.0 0.08384997316307272 6.73073277263338E-5 60-61 7.478591969592643E-6 0.0012863178187699346 0.0 0.0895561388358719 6.73073277263338E-5 62-63 7.478591969592643E-6 0.00130127500270912 0.0 0.09509403618935525 6.73073277263338E-5 64-65 7.478591969592643E-6 0.0015031969858881214 0.0 0.10062819424685382 6.73073277263338E-5 66-67 7.478591969592643E-6 0.001521893465812103 0.0 0.10621470244813952 6.73073277263338E-5 68-69 7.478591969592643E-6 0.0015592864256600662 0.0 0.11159554937026142 6.73073277263338E-5 70-71 7.478591969592643E-6 0.0015854614975536405 0.0 0.1170100499562465 6.73073277263338E-5 72-73 7.478591969592643E-6 0.001592940089523233 0.0 0.12119432216323359 7.478591969592643E-5 74-75 7.478591969592643E-6 0.0016228544574016035 0.0 0.12480274278856204 7.478591969592643E-5 76-77 7.478591969592643E-6 0.0016714653052039559 0.0 0.12796618719169972 7.478591969592643E-5 78-79 7.478591969592643E-6 0.0016976403770975301 0.0 0.13096884186749116 7.852521568072275E-5 80-81 7.478591969592643E-6 0.0016976403770975301 0.0 0.1323635992698202 8.226451166551907E-5 82-83 7.478591969592643E-6 0.001708858265051919 0.0 0.13287962211572207 8.974310363511172E-5 84-85 7.478591969592643E-6 0.0017125975610367153 0.0 0.13322737664230816 9.348239961990804E-5 86-87 7.478591969592643E-6 0.001720076153006308 0.0 0.13336199129776083 9.722169560470437E-5 88-89 1.4957183939185287E-5 0.0017873834807326417 0.0 0.1333806877776848 1.04700287574297E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 21810 0.0 35.79917 1 GTATCAA 35170 0.0 31.355623 1 ATCAACG 39455 0.0 27.126308 3 TCAACGC 39430 0.0 27.100422 4 CAACGCA 40265 0.0 26.580814 5 AACGCAG 41610 0.0 25.823784 6 TATCAAC 44410 0.0 24.525642 2 ACGCAGA 48225 0.0 22.211676 7 CGCAGAG 48500 0.0 22.12076 8 TACATGG 35745 0.0 19.27608 2 GTACATG 36935 0.0 19.195587 1 GCAGAGT 55800 0.0 19.143099 9 GAGTACT 31955 0.0 18.554575 12-13 ACATGGG 36550 0.0 18.429264 3 AGAGTAC 48415 0.0 18.36106 10-11 CTTATAC 8990 0.0 18.239408 1 CAGAGTA 51955 0.0 17.24081 10-11 AGTACTT 35065 0.0 16.878643 12-13 GTACTTT 36035 0.0 16.448702 14-15 CATGGGG 26745 0.0 16.340487 4 >>END_MODULE