##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139052_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11744788 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45810064856003 34.0 31.0 34.0 31.0 34.0 2 32.59214027532894 34.0 31.0 34.0 31.0 34.0 3 32.65145100958825 34.0 31.0 34.0 31.0 34.0 4 36.18223027950781 37.0 35.0 37.0 35.0 37.0 5 36.09761623624028 37.0 35.0 37.0 35.0 37.0 6 36.13466109392524 37.0 36.0 37.0 35.0 37.0 7 36.084769771919255 37.0 36.0 37.0 35.0 37.0 8 36.0577313102629 37.0 35.0 37.0 35.0 37.0 9 37.76929357941582 39.0 38.0 39.0 35.0 39.0 10-11 37.693841046769 39.0 37.0 39.0 35.0 39.0 12-13 37.63782275167504 39.0 37.0 39.0 35.0 39.0 14-15 38.97023062485249 40.0 38.0 41.0 35.0 41.0 16-17 38.936525503908626 40.0 38.0 41.0 35.0 41.0 18-19 38.929939178127356 40.0 38.0 41.0 35.0 41.0 20-21 38.90103722565986 40.0 38.0 41.0 35.0 41.0 22-23 38.79732050620636 40.0 38.0 41.0 35.0 41.0 24-25 38.665759164202015 40.0 38.0 41.0 34.0 41.0 26-27 38.59567355747238 40.0 38.0 41.0 34.5 41.0 28-29 38.547305204559706 40.0 38.0 41.0 34.0 41.0 30-31 38.47513521833271 40.0 38.0 41.0 34.0 41.0 32-33 38.36014151560978 40.0 38.0 41.0 34.0 41.0 34-35 38.24315354515605 40.0 38.0 41.0 34.0 41.0 36-37 38.37854497521643 40.0 38.0 41.0 34.0 41.0 38-39 38.43715637158181 40.0 38.0 41.0 34.0 41.0 40-41 38.379867733776585 40.0 38.0 41.0 34.0 41.0 42-43 38.34308577761098 40.0 38.0 41.0 34.0 41.0 44-45 38.311623935223615 40.0 38.0 41.0 33.5 41.0 46-47 38.21621998209646 40.0 38.0 41.0 33.0 41.0 48-49 38.138604148245875 40.0 38.0 41.0 33.0 41.0 50-51 38.058252355784255 40.0 37.0 41.0 33.0 41.0 52-53 37.987642114464734 40.0 37.0 41.0 33.0 41.0 54-55 37.86497168965634 40.0 37.0 41.0 33.0 41.0 56-57 37.70051847187116 40.0 36.5 41.0 33.0 41.0 58-59 37.57418123863572 39.0 36.0 41.0 32.5 41.0 60-61 37.419804410491565 39.0 36.0 41.0 32.0 41.0 62-63 37.20199358465331 39.0 35.0 40.5 32.0 41.0 64-65 36.87942053460942 38.5 35.0 40.0 31.5 41.0 66-67 36.580889326509116 38.0 35.0 40.0 31.0 41.0 68-69 36.300102777323104 37.0 35.0 40.0 31.0 41.0 70-71 35.98706400370945 37.0 35.0 39.5 31.0 41.0 72-73 35.671738463954384 36.0 34.0 39.0 30.5 41.0 74-75 35.34610960133475 36.0 34.0 39.0 30.0 40.0 76-77 34.372629517634294 35.0 33.5 37.0 29.0 39.0 78-79 34.697698357305285 35.0 34.0 37.0 30.0 39.0 80-81 34.54709330762617 35.0 34.0 37.0 30.0 39.0 82-83 34.30812779415338 35.0 34.0 36.5 30.0 38.5 84-85 34.05285672276263 35.0 34.0 36.0 30.0 37.0 86-87 33.82897127800855 35.0 34.0 36.0 30.0 37.0 88-89 33.6218231245943 35.0 33.0 35.0 29.0 36.5 90-91 33.45469010079641 35.0 33.0 35.0 29.0 36.0 92-93 33.327870036706535 35.0 33.0 35.0 29.0 36.0 94-95 33.27077414898663 35.0 33.0 35.0 29.0 36.0 96-97 33.290920603456804 35.0 33.0 35.0 29.0 35.5 98-99 33.34213756533542 35.0 33.0 35.0 30.0 35.0 100-101 31.851077339499042 33.0 30.0 34.5 26.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 0.0 16 0.0 17 0.0 18 2.0 19 10.0 20 73.0 21 390.0 22 1925.0 23 6086.0 24 15914.0 25 32056.0 26 56107.0 27 87623.0 28 125500.0 29 166673.0 30 211477.0 31 264666.0 32 329998.0 33 423320.0 34 576152.0 35 815446.0 36 1327056.0 37 2494095.0 38 3221422.0 39 1516292.0 40 72503.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.2749778029199 21.71411693425203 15.651776771109022 24.35912849171905 2 13.539214772025163 21.690535713297216 41.73155870772032 23.0386908069573 3 17.04159325821803 26.616861879499233 31.34931852324623 24.992226339036517 4 11.870635723692926 18.914134508004743 38.89141293993557 30.323816828366763 5 12.728837676763513 38.12602662559767 36.001032968836896 13.144102728801915 6 29.503529565625197 38.68162626690239 18.59624030676416 13.218603860708257 7 25.87422608224176 32.995376332037665 23.207247333881206 17.92315025183937 8 23.933390709138386 37.46474606438192 21.093654478905876 17.508208747573818 9 24.87446346413405 17.145418035642702 21.526782773771654 36.4533357264516 10-11 23.74293231691267 27.183088332239862 29.110337743859628 19.963641606987842 12-13 24.651632834456276 24.594678888818216 29.273438285601944 21.48024999112356 14-15 21.629255947608065 26.14884504692274 26.939906815659327 25.28199218980987 16-17 21.231106938669306 29.42820679266412 27.586449410581103 21.754236858085477 18-19 21.23007669444523 28.441300941319675 29.447640945072827 20.88098141916227 20-21 21.908111999333126 27.497520408389605 29.418112426346116 21.176255165931156 22-23 21.584482552707193 27.666662621806182 29.276678888531947 21.472175936954677 24-25 21.546454416284334 27.788995390193044 29.345634669796034 21.31891552372659 26-27 21.53417475702505 27.917443338088493 29.337472058258847 21.210909846627608 28-29 21.284274385583764 27.948312387201252 29.41676355217761 21.350649675037378 30-31 21.574950557460273 27.969383451433284 29.185160657588664 21.270505333517775 32-33 21.653693427027783 27.78304876644921 29.220065729250184 21.343192077272825 34-35 21.57016948348494 27.832270635591748 29.26757969567027 21.32998018525304 36-37 21.438774030176972 28.005005048915056 29.207402639362677 21.34881828154529 38-39 21.384665775201768 27.861617929053306 29.313913231597244 21.439803064147682 40-41 21.642644665814434 27.78665909331964 29.17587167921758 21.39482456164835 42-43 21.650172296204 27.84373505562776 28.917946634031054 21.588146014137177 44-45 21.590188749424478 28.043534243629644 28.71215773680906 21.654119270136817 46-47 21.844135756204206 27.922210706646013 28.35814651147993 21.87550702566985 48-49 21.770564052455434 28.03151174948349 28.33168108515775 21.866243112903323 50-51 21.55648025525089 28.149869325700198 28.42628451442575 21.86736590462316 52-53 21.74019443768746 28.16384567556541 28.317422816800086 21.778537069947042 54-55 21.763472610365245 28.08103338778944 28.21724538369156 21.93824861815376 56-57 21.921708131890867 28.257653895569945 27.978753668959722 21.841884303579462 58-59 21.695694800317618 28.44840321553999 28.23190052794641 21.624001456195973 60-61 21.922407130771347 28.54002643048058 27.980078526884412 21.557487911863657 62-63 21.741454093937893 28.74070966741749 27.86965864372303 21.64817759492158 64-65 21.70185577225596 28.59280097459433 27.946351743037525 21.758991510112192 66-67 21.773620059275895 28.478352005754097 27.859083839706695 21.88894409526331 68-69 21.811851546789953 28.283279626760223 27.97602046041485 21.928848366034973 70-71 21.781504722985826 28.113587904283115 28.043360778969557 22.061546593761502 72-73 21.889132964876588 28.1333914824851 28.05005381022924 21.927421742409074 74-75 21.76179712028467 28.302699517212954 27.98756999911388 21.947933363388497 76-77 21.78899507665814 28.21575206095211 27.94985556465976 22.04539729772999 78-79 21.81081490062251 28.13637857892018 27.968921379857335 22.08388514059997 80-81 21.847616562717725 28.17239533676301 27.971495286807148 22.00849281371212 82-83 21.84047972778555 28.143926877066285 28.10844269440629 21.907150700741873 84-85 21.946178706992274 28.10660082224155 28.038071691365708 21.90914877940047 86-87 21.824360457655725 28.139726461349657 28.07953507691337 21.956378004081248 88-89 21.853828675681225 28.02427546392502 28.042834348273477 22.079061512120283 90-91 21.907182396207848 28.074208670717432 28.062158669958688 21.956450263116036 92-93 21.939224639926078 27.968355311380826 28.143460672063387 21.948959376629713 94-95 21.735192097326355 28.000222520232093 28.215640919240837 22.04894446320072 96-97 21.661235284966033 28.13694964476482 28.24672509464295 21.955089975626198 98-99 21.93636020604567 28.618910713543904 28.29993160494462 21.14479747546581 100-101 22.092208821912674 31.46745773808066 25.63020296360469 20.810130476401973 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2288.0 1 2016.0 2 2857.5 3 4243.0 4 5766.0 5 8756.5 6 11242.5 7 13821.0 8 16008.0 9 16089.0 10 14696.0 11 13376.0 12 14860.5 13 20750.5 14 35216.5 15 55039.5 16 70371.0 17 77798.0 18 78028.5 19 73636.5 20 67366.5 21 61801.5 22 60352.0 23 65206.5 24 75930.0 25 92800.0 26 114060.0 27 137177.5 28 163279.5 29 191711.0 30 219181.0 31 245490.0 32 273175.5 33 301367.5 34 327977.0 35 351819.5 36 378362.0 37 402001.5 38 418918.5 39 433172.0 40 444921.5 41 456071.5 42 463216.5 43 468434.5 44 476157.0 45 487045.0 46 500358.0 47 510176.0 48 503887.0 49 485731.5 50 466274.5 51 443590.5 52 417005.5 53 390127.0 54 363755.5 55 334186.5 56 303299.0 57 271570.5 58 237053.5 59 201534.0 60 166403.0 61 134841.5 62 106217.5 63 80663.5 64 59884.5 65 43904.5 66 32849.5 67 25083.5 68 18958.5 69 13800.5 70 9873.0 71 6985.5 72 4864.0 73 3280.0 74 2161.0 75 1360.0 76 872.5 77 574.5 78 373.0 79 248.0 80 180.5 81 133.0 82 99.0 83 67.5 84 39.5 85 23.0 86 14.0 87 10.0 88 8.5 89 6.0 90 4.5 91 3.5 92 2.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.022077878289501692 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 3.7889147083795805E-4 12-13 0.001796541580827172 14-15 2.980045276253603E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008044517482474003 26-27 0.026408694463035287 28-29 0.3251317146662898 30-31 0.3108314740864793 32-33 0.3121838752246543 34-35 0.16820617939681712 36-37 0.030348051441864136 38-39 0.028853917209533335 40-41 0.011311640043903467 42-43 0.009187583937714154 44-45 0.003260434420104937 46-47 0.0021835466005087844 48-49 0.002109592947039008 50-51 0.002063811314615461 52-53 3.3516977290227686E-4 54-55 8.330152834702418E-5 56-57 3.687969577145344E-4 58-59 6.689261295453648E-4 60-61 0.003247361304984709 62-63 0.0026253424644056113 64-65 0.0027195212324075215 66-67 0.006037594414597884 68-69 0.00959101483990217 70-71 0.013794052689674987 72-73 0.013219948370865237 74-75 0.010086642934270857 76-77 0.005203769118882635 78-79 0.002008903355312127 80-81 0.0018365013509367264 82-83 2.40226325228542E-4 84-85 1.0802194746719858E-5 86-87 0.0 88-89 7.09110552661929E-4 90-91 0.0022874244988334417 92-93 0.014220399291229268 94-95 3.1937822749845377E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 246.0 20-21 880.0 22-23 1828.0 24-25 3858.0 26-27 7307.0 28-29 10433.0 30-31 23418.0 32-33 30876.0 34-35 44678.0 36-37 62019.0 38-39 74179.0 40-41 78471.0 42-43 93021.0 44-45 110924.0 46-47 109327.0 48-49 96327.0 50-51 86247.0 52-53 84061.0 54-55 92128.0 56-57 96469.0 58-59 97234.0 60-61 98655.0 62-63 101416.0 64-65 107964.0 66-67 117963.0 68-69 106594.0 70-71 101368.0 72-73 97217.0 74-75 99714.0 76-77 100730.0 78-79 107469.0 80-81 108754.0 82-83 107754.0 84-85 111999.0 86-87 117035.0 88-89 126301.0 90-91 136785.0 92-93 142447.0 94-95 164127.0 96-97 249247.0 98-99 1029889.0 100-101 7207429.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.1244439818348 #Duplication Level Percentage of deduplicated Percentage of total 1 88.30626409236004 73.40409102790493 2 7.898836895416841 13.131728500694544 3 2.0972712803323335 5.2300352717008805 4 0.797318467125338 2.651066170249703 5 0.3611956366838079 1.5012093234003174 6 0.18544088373434187 0.9248802211150344 7 0.11498163819990827 0.669044932044151 8 0.06974911061461596 0.4638284830453956 9 0.046829416717181 0.35034023039483797 >10 0.11984641118191834 1.4939174000424489 >50 0.001861715380091319 0.10518247416173118 >100 3.873142720373236E-4 0.06386336363566725 >500 1.713798161130447E-5 0.010812601610396403 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.514415075010294E-6 0.0 2 0.0 1.7028830150020588E-5 0.0 1.7028830150020588E-5 0.0 3 0.0 2.5543245225030883E-5 0.0 1.7028830150020588E-5 0.0 4 0.0 5.108649045006177E-5 0.0 2.5543245225030883E-5 1.7028830150020588E-5 5 0.0 5.108649045006177E-5 0.0 2.5543245225030883E-5 1.7028830150020588E-5 6 0.0 5.108649045006177E-5 0.0 2.5543245225030883E-5 2.5543245225030883E-5 7 0.0 5.108649045006177E-5 0.0 2.5543245225030883E-5 2.5543245225030883E-5 8 0.0 5.108649045006177E-5 0.0 3.4057660300041176E-5 2.5543245225030883E-5 9 0.0 7.662973567509265E-5 0.0 5.108649045006177E-5 3.4057660300041176E-5 10-11 1.2771622612515442E-5 7.662973567509265E-5 0.0 5.108649045006177E-5 3.4057660300041176E-5 12-13 3.4057660300041176E-5 8.94013582876081E-5 0.0 5.5343697987566916E-5 3.4057660300041176E-5 14-15 3.4057660300041176E-5 1.5325947135018527E-4 0.0 5.960090552507206E-5 4.682928291255662E-5 16-17 4.257207537505147E-5 1.6177388642519557E-4 0.0 5.960090552507206E-5 5.960090552507206E-5 18-19 4.257207537505147E-5 1.7454550903771103E-4 0.0 1.2345901858764927E-4 7.662973567509265E-5 20-21 4.257207537505147E-5 1.8731713165022647E-4 0.0 1.6603109396270074E-4 8.514415075010294E-5 22-23 7.23725281375875E-5 1.9157433918773163E-4 0.0 1.9583154672523674E-4 1.1494460351263897E-4 24-25 8.514415075010294E-5 2.2137479195026766E-4 0.0 2.171175844127625E-4 1.277162261251544E-4 26-27 8.514415075010294E-5 2.3840362210028824E-4 0.0 2.6394686732531913E-4 1.277162261251544E-4 28-29 1.0217298090012353E-4 2.3840362210028824E-4 0.0 6.68381583388308E-4 1.277162261251544E-4 30-31 1.1068739597513382E-4 2.5968965978781397E-4 0.0 0.001715654637614574 1.3197343366265957E-4 32-33 1.277162261251544E-4 2.724612824003294E-4 0.0 0.0034398236903041587 1.44745056275175E-4 34-35 1.277162261251544E-4 3.0226173516286544E-4 0.0 0.00608780677863236 1.7028830150020587E-4 36-37 1.362306412001647E-4 3.448338105379169E-4 0.0 0.009872464279474436 1.7028830150020587E-4 38-39 1.362306412001647E-4 3.5760543315043234E-4 0.0 0.01618590305759457 1.8731713165022647E-4 40-41 1.4048784873766984E-4 4.001775085254838E-4 0.0 0.02274625987289 1.8731713165022647E-4 42-43 1.6603109396270074E-4 4.34235168825525E-4 0.0 0.028612691859572093 1.8731713165022647E-4 44-45 1.7880271657521617E-4 4.8532165927558674E-4 0.0 0.03558174059846801 1.9583154672523677E-4 46-47 1.8731713165022647E-4 5.236365271131332E-4 0.0 0.04318511326045221 2.0434596180024707E-4 48-49 1.9157433918773163E-4 5.278937346506383E-4 0.0 0.050183962452110674 2.2988920702527794E-4 50-51 2.0434596180024707E-4 6.08780677863236E-4 0.0 0.05687629270106877 2.2988920702527794E-4 52-53 2.1286037687525734E-4 6.215523004757514E-4 0.0 0.06323656076210145 2.4266082963779337E-4 54-55 2.171175844127625E-4 6.38581130625772E-4 0.0 0.07044827033063517 2.5968965978781397E-4 56-57 2.341464145627831E-4 6.556099607757926E-4 0.0 0.07694476903286802 2.6394686732531913E-4 58-59 2.937473200878551E-4 6.598671683132977E-4 0.0 0.08253448252961229 2.6394686732531913E-4 60-61 3.1503335777538087E-4 6.683815833883082E-4 0.0 0.08797519376254387 2.724612824003294E-4 62-63 3.1503335777538087E-4 6.811532060008235E-4 0.0 0.09328393156181278 3.0226173516286544E-4 64-65 3.1503335777538087E-4 7.492685266009059E-4 0.0 0.09887790226609455 3.065189427003706E-4 66-67 3.19290565312886E-4 7.662973567509264E-4 0.0 0.10465919010202654 3.1077615023787576E-4 68-69 3.278049803878963E-4 7.833261869009471E-4 0.0 0.11023613197615828 3.19290565312886E-4 70-71 3.3206218792540147E-4 7.918406019759573E-4 0.0 0.11521706479503929 3.448338105379169E-4 72-73 3.533482256129272E-4 7.918406019759573E-4 0.0 0.11938061376671932 4.001775085254838E-4 74-75 3.661198482254426E-4 8.046122245884727E-4 0.0 0.12308864153188631 4.001775085254838E-4 76-77 3.661198482254426E-4 8.258982622759985E-4 0.0 0.12632837646792772 4.0443471606298897E-4 78-79 3.661198482254426E-4 8.344126773510088E-4 0.0 0.1297852289883819 4.0869192360049413E-4 80-81 3.661198482254426E-4 8.344126773510088E-4 0.0 0.13119436468329612 4.299779612880199E-4 82-83 3.661198482254426E-4 8.344126773510088E-4 0.0 0.1316754291350342 4.7680724420057647E-4 84-85 3.661198482254426E-4 8.599559225760397E-4 0.0 0.13197343366265957 4.7680724420057647E-4 86-87 3.661198482254426E-4 8.6847033765105E-4 0.0 0.13204580619079714 4.8106445173808163E-4 88-89 3.661198482254426E-4 8.940135828760809E-4 0.0 0.13205857781340966 4.8532165927558674E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19860 0.0 36.78951 1 CTTATAC 10105 0.0 33.118618 1 GTATCAA 32365 0.0 31.612886 1 ATCAACG 39560 0.0 25.308222 3 TCAACGC 39780 0.0 25.178955 4 CAACGCA 40200 0.0 24.895033 5 TATACAC 15850 0.0 24.734943 3 TATCAAC 41065 0.0 24.573244 2 AACGCAG 41395 0.0 24.228085 6 TTATACA 15825 0.0 22.762115 2 ACGCAGA 46760 0.0 21.449102 7 CGCAGAG 47455 0.0 21.179823 8 GTACATG 32470 0.0 20.6006 1 TACATGG 31955 0.0 20.279715 2 ACATGGG 32320 0.0 19.66387 3 ACATCTC 17395 0.0 19.65167 8 ACACATC 17490 0.0 19.398144 6 GAGTACT 30025 0.0 18.984428 12-13 AGAGTAC 44090 0.0 18.847252 10-11 GCAGAGT 53520 0.0 18.652414 9 >>END_MODULE