##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139050_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10105052 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71090717791457 33.0 33.0 33.0 33.0 33.0 2 32.724411908023825 33.0 33.0 33.0 33.0 33.0 3 32.617754168904824 33.0 33.0 33.0 33.0 33.0 4 36.60136731607121 37.0 37.0 37.0 37.0 37.0 5 36.65872041034524 37.0 37.0 37.0 37.0 37.0 6 36.67729448596603 37.0 37.0 37.0 37.0 37.0 7 36.659096261948974 37.0 37.0 37.0 37.0 37.0 8 36.66383201194808 37.0 37.0 37.0 37.0 37.0 9 36.656033041690435 37.0 37.0 37.0 37.0 37.0 10-11 36.627524826195845 37.0 37.0 37.0 37.0 37.0 12-13 36.59914050912356 37.0 37.0 37.0 37.0 37.0 14-15 38.70158659252817 40.0 37.0 40.0 37.0 40.0 16-17 38.663277982142006 40.0 37.0 40.0 37.0 40.0 18-19 38.710430980464025 40.0 37.0 40.0 37.0 40.0 20-21 38.74992104507689 40.0 37.0 40.0 37.0 40.0 22-23 38.78574634997307 40.0 37.0 40.0 37.0 40.0 24-25 38.80340683331785 40.0 37.0 40.0 37.0 40.0 26-27 38.514547465453504 40.0 37.0 40.0 37.0 40.0 28-29 38.479510104384595 40.0 37.0 40.0 37.0 40.0 30-31 38.472523994572335 40.0 37.0 40.0 37.0 40.0 32-33 38.45826284544205 40.0 37.0 40.0 37.0 40.0 34-35 38.285619793202805 40.0 37.0 40.0 37.0 40.0 36-37 38.34696716147654 40.0 37.0 40.0 37.0 40.0 38-39 38.28092882817994 40.0 37.0 40.0 37.0 40.0 40-41 38.29173735851427 40.0 37.0 40.0 37.0 40.0 42-43 38.24768038665788 40.0 37.0 40.0 37.0 40.0 44-45 38.17512690176244 40.0 37.0 40.0 37.0 40.0 46-47 38.093140429406006 40.0 37.0 40.0 35.0 40.0 48-49 37.86507412125532 40.0 37.0 40.0 33.0 40.0 50-51 37.96518108886764 40.0 37.0 40.0 33.0 40.0 52-53 37.943573024074226 40.0 37.0 40.0 33.0 40.0 54-55 33.408234212238604 37.0 33.0 40.0 10.5 40.0 56-57 36.60968384119066 37.0 35.0 40.0 30.0 40.0 58-59 37.409983728437176 38.5 37.0 40.0 33.0 40.0 60-61 37.45203711910056 38.5 37.0 40.0 33.0 40.0 62-63 37.22729854311666 37.0 37.0 40.0 33.0 40.0 64-65 32.34701253138858 37.0 33.0 40.0 8.5 40.0 66-67 35.41293110866571 37.0 33.0 40.0 30.0 40.0 68-69 36.28076507029094 37.0 37.0 40.0 33.0 40.0 70-71 36.20877583130485 37.0 37.0 38.5 33.0 40.0 72-73 35.5694652259997 37.0 37.0 37.0 33.0 40.0 74-75 35.6363680895673 37.0 35.0 37.0 33.0 40.0 76-77 33.82272067387021 35.0 33.0 37.0 30.0 37.0 78-79 35.3483135523265 37.0 33.0 37.0 33.0 37.0 80-81 35.5517356422768 37.0 33.0 37.0 33.0 37.0 82-83 35.48936731440492 37.0 33.0 37.0 33.0 37.0 84-85 35.37111079856395 37.0 33.0 37.0 33.0 37.0 86-87 35.2698319198998 37.0 33.0 37.0 33.0 37.0 88-89 35.18547433175628 37.0 33.0 37.0 33.0 37.0 90-91 35.091349496214725 37.0 33.0 37.0 33.0 37.0 92-93 35.02609464705134 37.0 33.0 37.0 33.0 37.0 94-95 34.977991456816994 37.0 33.0 37.0 33.0 37.0 96-97 34.94469563976295 37.0 33.0 37.0 33.0 37.0 98-99 34.90931960392466 37.0 33.0 37.0 33.0 37.0 100 34.86715545792318 37.0 33.0 37.0 33.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 26.0 20 66.0 21 308.0 22 999.0 23 2787.0 24 6822.0 25 13893.0 26 24950.0 27 40562.0 28 61188.0 29 88849.0 30 123333.0 31 170317.0 32 233039.0 33 323831.0 34 470304.0 35 772597.0 36 1614376.0 37 2647273.0 38 3370471.0 39 139058.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.357688249173606 20.228339273102137 14.581183212237129 22.83278926548713 2 14.641450102527934 20.98999797230118 42.19086078833249 22.177691136838398 3 18.40067112984773 26.604920794188793 30.42828071666486 24.566127359298612 4 12.334176184871508 18.033885482248454 38.86569958459177 30.766238748288266 5 13.037583989069814 37.98996139714579 35.122648835569976 13.849805778214419 6 29.402520640170877 37.96331775432724 18.61825154388122 14.015910061620662 7 26.16137947632531 33.40513240307917 22.689512137097363 17.743975983498157 8 24.46683104649041 36.50194971782431 20.914637549613797 18.11658168607148 9 25.89630414568871 16.807167345600995 21.399790916464358 35.896737592245934 10-11 24.129514622982644 27.06917292459257 28.29641549593213 20.504896956492654 12-13 25.32893942554675 24.850648962518946 28.765987547614795 21.05442406431951 14-15 22.374733944961392 25.892370469741273 27.138336348986623 24.594559236310708 16-17 20.97605237459441 29.341491760754916 27.635612364983373 22.046843499667297 18-19 20.992286828410187 27.8592777157406 30.47499409206405 20.673441363785162 20-21 22.19958171357895 26.7801431171537 30.373910969130165 20.646364200137192 22-23 21.909626407176017 26.78588359460346 30.286209501843903 21.018280496376622 24-25 21.50647470270379 27.09982548775645 30.33995610688166 21.053743702658103 26-27 21.475764983675088 27.140116136817273 30.247113113288954 21.13700576621869 28-29 21.159448224181954 27.245214424428678 30.422328398878257 21.173008952511115 30-31 21.45770794844049 27.355126917956706 30.181013454986918 21.006151678615886 32-33 21.305460786541765 27.265456898627615 30.292736830636922 21.136345484193697 34-35 21.360781090408253 27.232098695857836 30.277230380063546 21.129889833670365 36-37 21.395751814720512 27.495876268624585 29.9484311993579 21.159940717297005 38-39 21.386312068018125 27.42284224950583 30.010840559319252 21.180005123156796 40-41 21.443444906602565 27.353802482557644 29.90321810250935 21.29953450833045 42-43 21.450440376071327 27.519179020994933 29.57922468298961 21.451155919944128 44-45 21.660586415408197 27.66851062690237 29.18810801427167 21.482794943417765 46-47 21.78944197684834 27.868588837423143 28.56625121214603 21.775717973582484 48-49 21.769421665797104 28.177483398594294 28.15998145693917 21.89311347866943 50-51 21.783164446054727 28.1544513112981 28.125085103260066 21.937299139387108 52-53 21.93958328300902 28.084517735343713 28.011110733413112 21.96478824823415 54-55 22.975690811728505 28.053634476653112 27.24305813361203 21.72761657800636 56-57 22.031419225202747 28.175286496893285 27.777152139399213 22.01614213850475 58-59 21.829050168908495 28.30794348316492 27.95481591564132 21.908190432285267 60-61 22.038129451606203 28.371687614109515 27.759711779306233 21.83047115497805 62-63 22.002765947886346 28.467553654585686 27.627198567891142 21.902481829636823 64-65 22.442284282502076 28.24034084676977 27.38967455812532 21.92770031260283 66-67 22.05765358485531 28.233298262930468 27.593301517876583 22.11574663433764 68-69 22.01997367962235 28.20160467869345 27.69222314591412 22.086198495770084 70-71 22.01021701077627 28.058350755504215 27.76680437764337 22.164627856076144 72-73 22.093938678300542 28.104174010710686 27.618283877427384 22.18360343356139 74-75 21.968467741466227 28.157404653980304 27.71161896443533 22.16250864011814 76-77 22.103355695392704 28.07085271939676 27.59183992806112 22.233951657149422 78-79 22.03258703478387 28.06877412764935 27.643726936345566 22.254911901221217 80-81 22.05114763051688 28.024182721098224 27.685686941877773 22.238982706507123 82-83 22.02893103802331 28.01779870664167 27.808902455391394 22.144367799943623 84-85 22.211002827300494 27.967544912626778 27.661533501581008 22.159918758491713 86-87 22.086345630313726 27.949940143082753 27.767293324238416 22.196420902365105 88-89 22.143727242987048 27.83234215376759 27.75251141673959 22.271419186505774 90-91 22.166933265308433 27.794640935852915 27.751031024855155 22.287394773983497 92-93 22.2718164440968 27.763997129989836 27.748485779654974 22.21570064625839 94-95 22.087816820012357 27.742998979795164 27.896752269198455 22.27243193099402 96-97 22.166063292759052 27.881985664360577 27.918602833452848 22.03334820942752 98-99 23.34326057988675 29.773010383919875 28.036506817172913 18.847222219020463 100 22.279905140466873 30.70560024949145 21.921341640918012 25.09315296912366 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2125.0 1 2159.0 2 3666.0 3 5454.5 4 8111.0 5 14625.0 6 19750.5 7 22754.0 8 24558.5 9 23611.5 10 20994.0 11 18247.0 12 19567.0 13 27671.5 14 49113.0 15 79207.0 16 103745.5 17 117235.0 18 117607.5 19 107205.5 20 91411.5 21 74710.0 22 62636.0 23 59650.0 24 65247.5 25 78035.5 26 95491.5 27 113816.0 28 133437.0 29 155996.0 30 178370.0 31 200822.5 32 224611.5 33 247640.5 34 269131.5 35 287841.0 36 307459.5 37 327826.0 38 343658.5 39 355417.0 40 366548.0 41 378226.5 42 387826.0 43 396743.5 44 405319.0 45 409753.0 46 413160.5 47 415792.5 48 412402.0 49 405777.0 50 396607.0 51 382579.0 52 366244.0 53 349012.5 54 331129.5 55 310302.5 56 286797.0 57 260433.0 58 230693.5 59 198231.5 60 164265.0 61 132533.0 62 104052.0 63 79292.5 64 58928.5 65 43867.5 66 33028.5 67 24799.0 68 18560.5 69 13153.0 70 8993.0 71 6440.0 72 4350.5 73 2858.5 74 1948.0 75 1273.5 76 838.0 77 536.5 78 359.5 79 262.5 80 184.0 81 123.5 82 83.0 83 56.0 84 40.5 85 26.0 86 17.0 87 13.0 88 9.5 89 7.5 90 5.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 9.896040119338327E-6 2 9.896040119338327E-6 3 0.0029787080759208365 4 0.01242942638988894 5 0.016368050357385592 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0017026743519975313 26-27 0.034823860941073245 28-29 0.08135764580233254 30-31 0.07935337940564632 32-33 0.03475905177625325 34-35 7.394061090132406E-4 36-37 5.021744656537272E-6 38-39 1.0114819895264074E-5 40-41 0.0 42-43 5.147797381047787E-6 44-45 5.210006233772459E-6 46-47 0.0 48-49 5.355551015238417E-6 50-51 1.0828246629126218E-5 52-53 0.0 54-55 1.2573366893503106 56-57 7.24032020705979E-5 58-59 0.0 60-61 0.0 62-63 0.0 64-65 5.228101994479588 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.009107451567808704 74-75 0.031105465591568706 76-77 0.004759633848609602 78-79 0.0 80-81 0.0 82-83 0.003890255320597095 84-85 0.03860140614683786 86-87 0.04138666187825745 88-89 0.013635725094474433 90-91 1.3482734616772818E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 169.0 20-21 529.0 22-23 1261.0 24-25 4551.0 26-27 7339.0 28-29 11868.0 30-31 26647.0 32-33 34195.0 34-35 46978.0 36-37 65184.0 38-39 80761.0 40-41 87732.0 42-43 108332.0 44-45 134121.0 46-47 131490.0 48-49 106178.0 50-51 88199.0 52-53 86969.0 54-55 82919.0 56-57 88305.0 58-59 88685.0 60-61 88206.0 62-63 93459.0 64-65 87996.0 66-67 95837.0 68-69 93037.0 70-71 91165.0 72-73 85653.0 74-75 87405.0 76-77 88098.0 78-79 93035.0 80-81 94311.0 82-83 90955.0 84-85 91841.0 86-87 95925.0 88-89 101869.0 90-91 106033.0 92-93 110574.0 94-95 125439.0 96-97 315691.0 98-99 571870.0 100-101 6214241.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.1973482461985 #Duplication Level Percentage of deduplicated Percentage of total 1 89.11652587965642 75.03375163980793 2 7.472011390395189 12.582470902733311 3 1.876728271168052 4.740466314330677 4 0.7040664085304105 2.3712209834994096 5 0.33350123402593884 1.4039959770909458 6 0.17588670842535792 0.8885516664700461 7 0.09354501973341259 0.5513369822234155 8 0.0639286702547239 0.4306099609882704 9 0.04034406447926259 0.3057176921964803 >10 0.1212437830545496 1.5401920238884221 >50 0.0018169572728168055 0.0999717271398316 >100 4.0161300379586964E-4 0.05171412963123463 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.896040119338327E-6 2 0.0 9.896040119338327E-6 0.0 0.0 9.896040119338327E-6 3 0.0 1.9792080238676654E-5 0.0 0.0 9.896040119338327E-6 4 0.0 2.968812035801498E-5 0.0 0.0 9.896040119338327E-6 5 0.0 3.958416047735331E-5 0.0 0.0 9.896040119338327E-6 6 0.0 3.958416047735331E-5 0.0 0.0 9.896040119338327E-6 7 0.0 3.958416047735331E-5 0.0 0.0 9.896040119338327E-6 8 0.0 3.958416047735331E-5 0.0 0.0 9.896040119338327E-6 9 0.0 7.916832095470662E-5 0.0 0.0 9.896040119338327E-6 10-11 0.0 8.411634101437577E-5 0.0 0.0 9.896040119338327E-6 12-13 0.0 8.906436107404494E-5 0.0 4.9480200596691636E-6 9.896040119338327E-6 14-15 0.0 1.2864852155139824E-4 0.0 9.896040119338327E-6 1.9792080238676654E-5 16-17 0.0 1.2864852155139824E-4 0.0 2.4740100298345818E-5 2.968812035801498E-5 18-19 0.0 1.484406017900749E-4 0.0 5.44282206563608E-5 2.968812035801498E-5 20-21 0.0 1.731807020884207E-4 0.0 5.937624071602996E-5 2.968812035801498E-5 22-23 0.0 2.1771288262544317E-4 0.0 6.927228083536829E-5 4.9480200596691636E-5 24-25 0.0 2.42452982923789E-4 0.0 1.8802476226742823E-4 5.937624071602996E-5 26-27 0.0 2.572970431027965E-4 0.0 4.1068566495254056E-4 5.937624071602996E-5 28-29 0.0 2.572970431027965E-4 0.0 0.0017763392014212298 5.937624071602996E-5 30-31 9.896040119338327E-6 3.1667328381882647E-4 0.0 0.005042032440802878 6.432426077569912E-5 32-33 9.896040119338327E-6 3.3151734399783394E-4 0.0 0.00941113415349075 6.927228083536829E-5 34-35 9.896040119338327E-6 3.8594556465419477E-4 0.0 0.015813872110702648 6.927228083536829E-5 36-37 9.896040119338327E-6 4.255297251315481E-4 0.0 0.026704464262034475 6.927228083536829E-5 38-39 9.896040119338327E-6 4.3047774519121724E-4 0.0 0.03911904659174441 6.927228083536829E-5 40-41 9.896040119338327E-6 4.7006190566857055E-4 0.0 0.049208059493409825 6.927228083536829E-5 42-43 9.896040119338327E-6 4.997500260265856E-4 0.0 0.05938118873608963 6.927228083536829E-5 44-45 9.896040119338327E-6 5.44282206563608E-4 0.0 0.06773344659681119 6.927228083536829E-5 46-47 9.896040119338327E-6 5.640742868022846E-4 0.0 0.07585314751472827 7.422030089503746E-5 48-49 9.896040119338327E-6 5.690223068619538E-4 0.0 0.0829733483805922 7.916832095470662E-5 50-51 9.896040119338327E-6 6.333465676376529E-4 0.0 0.09002427696562076 7.916832095470662E-5 52-53 9.896040119338327E-6 6.333465676376529E-4 0.0 0.09719395803208138 8.906436107404494E-5 54-55 9.896040119338327E-6 6.382945876973221E-4 0.0 0.10338887914678718 9.896040119338327E-5 56-57 9.896040119338327E-6 6.67982708055337E-4 0.0 0.10887623339296026 1.0390842125305243E-4 58-59 9.896040119338327E-6 6.927228083536829E-4 0.0 0.11433389951877536 1.088564413127216E-4 60-61 9.896040119338327E-6 7.125148885923596E-4 0.0 0.1198311498050678 1.088564413127216E-4 62-63 9.896040119338327E-6 7.323069688310362E-4 0.0 0.12480390996503532 1.088564413127216E-4 64-65 9.896040119338327E-6 7.619950891890512E-4 0.0 0.1301972518300747 1.088564413127216E-4 66-67 9.896040119338327E-6 7.669431092487204E-4 0.0 0.13643175710525784 1.1380446137239077E-4 68-69 9.896040119338327E-6 8.015792496664045E-4 0.0 0.14262173019990398 1.1875248143205993E-4 70-71 9.896040119338327E-6 8.114752897857428E-4 0.0 0.14784189136285492 1.1875248143205993E-4 72-73 9.896040119338327E-6 8.114752897857428E-4 0.0 0.1524682901186456 1.2864852155139824E-4 74-75 9.896040119338327E-6 8.16423309845412E-4 0.0 0.15586757989963831 1.2864852155139824E-4 76-77 9.896040119338327E-6 8.510594502630962E-4 0.0 0.15902441669770725 1.2864852155139824E-4 78-79 9.896040119338327E-6 8.708515305017728E-4 0.0 0.16120649354402133 1.2864852155139824E-4 80-81 9.896040119338327E-6 8.708515305017728E-4 0.0 0.16203776091404576 1.2864852155139824E-4 82-83 9.896040119338327E-6 8.708515305017728E-4 0.0 0.1627057436221011 1.2864852155139824E-4 84-85 9.896040119338327E-6 8.807475706211111E-4 0.0 0.16299272878556192 1.2864852155139824E-4 86-87 9.896040119338327E-6 9.005396508597877E-4 0.0 0.16309663720681497 1.2864852155139824E-4 88 9.896040119338327E-6 9.302277712178028E-4 0.0 0.16309663720681497 1.2864852155139824E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 20715 0.0 51.911606 1 GTATCAA 39135 0.0 37.837425 1 TCAACGC 48860 0.0 29.95173 4 ATCAACG 48595 0.0 29.94594 3 TATCAAC 49470 0.0 29.616158 2 CAACGCA 49805 0.0 29.34656 5 AACGCAG 50960 0.0 28.757992 6 GTGGTAT 8615 0.0 27.73841 1 TGGTATC 8810 0.0 25.674696 2 ACGCAGA 58110 0.0 25.219536 7 CGCAGAG 58835 0.0 24.901766 8 GCAGAGT 65330 0.0 22.356722 9 GTACATG 43900 0.0 20.74133 1 GAGTACT 40735 0.0 20.399893 12-13 TACATGG 44250 0.0 20.214148 2 CTTATAC 6755 0.0 19.578909 1 CAGAGTA 64720 0.0 19.448982 10-11 ACATGGG 45095 0.0 19.38768 3 AGAGTAC 61835 0.0 18.757732 10-11 GTACTTT 44850 0.0 18.423403 14-15 >>END_MODULE