##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139049_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9012550 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.66626371004877 34.0 31.0 34.0 31.0 34.0 2 32.81317107810775 34.0 31.0 34.0 31.0 34.0 3 32.85999822469778 34.0 31.0 34.0 31.0 34.0 4 36.32473883640035 37.0 37.0 37.0 35.0 37.0 5 36.26211349728989 37.0 37.0 37.0 35.0 37.0 6 36.29735724073653 37.0 37.0 37.0 35.0 37.0 7 36.25086207566116 37.0 37.0 37.0 35.0 37.0 8 36.2337182040599 37.0 37.0 37.0 35.0 37.0 9 37.91279848655486 39.0 38.0 39.0 35.0 39.0 10-11 37.88494122085314 39.0 38.0 39.0 35.0 39.0 12-13 37.85769133042258 39.0 38.0 39.0 35.0 39.0 14-15 39.268557455991925 41.0 39.0 41.0 36.0 41.0 16-17 39.25451220797666 41.0 39.0 41.0 36.0 41.0 18-19 39.28800999717061 41.0 39.0 41.0 36.0 41.0 20-21 39.20755265901771 41.0 39.0 41.0 36.0 41.0 22-23 39.20083243326201 40.0 39.0 41.0 36.0 41.0 24-25 39.10595897379402 40.0 39.0 41.0 35.5 41.0 26-27 38.963943616312335 40.0 39.0 41.0 35.0 41.0 28-29 38.83489230837996 40.0 38.0 41.0 35.0 41.0 30-31 38.71406906747734 40.0 38.0 41.0 35.0 41.0 32-33 38.62152903785948 40.0 38.0 41.0 35.0 41.0 34-35 38.48205006778153 40.0 38.0 41.0 34.5 41.0 36-37 38.621876079337326 40.0 38.0 41.0 35.0 41.0 38-39 38.682645247823054 40.0 38.0 41.0 35.0 41.0 40-41 38.66502859617144 40.0 38.0 41.0 35.0 41.0 42-43 38.631424929355504 40.0 38.0 41.0 35.0 41.0 44-45 38.55745198662116 40.0 38.0 41.0 34.0 41.0 46-47 38.495983793363365 40.0 38.0 41.0 34.0 41.0 48-49 38.40744439652974 40.0 38.0 41.0 34.0 41.0 50-51 38.31002923978874 40.0 38.0 41.0 34.0 41.0 52-53 38.19810527374401 40.0 37.5 41.0 34.0 41.0 54-55 38.058209251417125 40.0 37.0 41.0 33.0 41.0 56-57 37.90499045103733 40.0 37.0 41.0 33.0 41.0 58-59 37.713996299779005 39.5 36.0 41.0 33.0 41.0 60-61 37.48279990317546 39.0 36.0 41.0 33.0 41.0 62-63 37.283512523433444 39.0 35.5 40.0 32.5 41.0 64-65 37.04799374783981 38.5 35.0 40.0 32.0 41.0 66-67 36.77219836706376 38.0 35.0 40.0 32.0 41.0 68-69 36.41792202811419 37.0 35.0 40.0 31.0 41.0 70-71 36.1446147876043 37.0 35.0 39.5 31.0 41.0 72-73 35.820830520181374 36.0 34.5 39.0 31.0 40.5 74-75 35.48959318879406 36.0 34.0 39.0 31.0 40.0 76-77 34.46334088963167 35.0 33.5 37.0 29.5 39.0 78-79 34.75849831963792 35.0 34.0 37.0 30.5 39.0 80-81 34.59582482430251 35.0 34.0 37.0 30.5 39.0 82-83 34.32096000160706 35.0 34.0 36.0 30.0 38.5 84-85 34.05655903619602 35.0 34.0 36.0 30.0 37.0 86-87 33.831718747352625 35.0 34.0 35.5 30.0 37.0 88-89 33.647047756754134 35.0 33.0 35.0 30.0 36.5 90-91 33.455738587222044 35.0 33.0 35.0 30.0 36.0 92-93 33.31665536118367 35.0 33.0 35.0 29.0 36.0 94-95 33.228613429201616 34.0 33.0 35.0 29.0 35.5 96-97 33.21030084235789 34.0 33.0 35.0 29.0 35.0 98-99 33.21814146562223 34.0 33.0 35.0 30.0 35.0 100-101 32.214441554837364 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 35.0 21 251.0 22 1059.0 23 3582.0 24 9372.0 25 19374.0 26 34663.0 27 54275.0 28 77540.0 29 104589.0 30 134858.0 31 169733.0 32 215186.0 33 280968.0 34 397360.0 35 578400.0 36 1006896.0 37 2060995.0 38 2646288.0 39 1170334.0 40 46787.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.877791399525265 21.618134891693792 15.125765196949276 24.37830851183167 2 13.552371102904623 22.22045664370428 41.502678698245866 22.72449355514523 3 16.362574006532444 27.76237887860582 31.84262299156432 24.032424123297417 4 11.618281892819187 19.323196796998317 39.89865904706617 29.159862263116327 5 12.473230381327191 38.43065929516722 36.167592542354 12.92851778115159 6 28.277094526753753 39.308635104230774 19.420698850014574 12.993571519000897 7 24.95977553076272 33.5158788040986 24.251385484838973 17.272960180299712 8 23.97363676207067 36.73812627946585 21.816100881548508 17.472136076914968 9 25.488546526787648 16.641094917642622 21.743812794381167 36.12654576118857 10-11 23.438522192761866 27.113966753686665 29.775379451268062 19.67213160228341 12-13 24.59039894369518 24.928005947262427 29.58532823673655 20.89626687230584 14-15 21.77551622181581 26.110284325259066 27.463058853683687 24.65114059924144 16-17 21.065737673440736 29.166853675855386 28.025414312963008 21.74199433774087 18-19 21.08615763574127 28.324602914824325 29.888949298478234 20.700290150956167 20-21 22.07217705973977 27.41191466579378 29.685734773786127 20.830173500680328 22-23 21.723596999626135 27.40984990251659 29.515139752112823 21.35141334574445 24-25 21.55371001620736 27.59777059695285 29.623463278242806 21.225056108596984 26-27 21.537456090460896 27.774246023138765 29.45315666119467 21.235141225205666 28-29 21.45584162918371 27.806295353636457 29.490032997635385 21.247830019544452 30-31 21.60910611471282 27.72605080436837 29.48491421169913 21.179928869219676 32-33 21.525070133848327 27.830685367832686 29.393068840575857 21.251175657743126 34-35 21.659357604719457 27.770121768856164 29.373396195714278 21.197124430710105 36-37 21.555582712511807 27.82015238203266 29.31091174004221 21.31335316541332 38-39 21.457320992648405 27.848628728059943 29.35516946622702 21.338880813064627 40-41 21.63186722957023 27.78965698919581 29.182666538941387 21.395809242292575 42-43 21.616165296102345 27.870019613201823 29.0112652365479 21.50254985414793 44-45 21.69558702484807 28.02221938162392 28.7401380716369 21.542055521891115 46-47 21.797397157374046 27.900956776745566 28.385558975244003 21.916087090636385 48-49 21.7654675128235 28.098229965282258 28.30133200470626 21.834970517187987 50-51 21.716583931160777 28.173998693432907 28.193806934127114 21.915610441279203 52-53 21.840956053316614 28.11899516776457 28.08741511845319 21.95263366046562 54-55 21.8344842555947 28.071983962719855 28.067492203459217 22.026039578226232 56-57 21.94374527475109 28.17314370982027 27.973614326400714 21.90949668902792 58-59 21.81308193271758 28.36142222867802 28.06602008230648 21.75947575629792 60-61 22.014985710017257 28.318218738773883 27.88880576995636 21.7779897812525 62-63 21.927276206723644 28.38752837227034 27.81882560804548 21.86636981296054 64-65 21.83827014552511 28.315853964685477 27.906624269292728 21.939251620496684 66-67 21.953668708353828 28.351764059363273 27.72670978615957 21.967857446123332 68-69 21.93919207571129 28.17821491390564 27.864531771239154 22.018061239143915 70-71 21.953888897065195 27.975804671287918 27.902172117810775 22.16813431383611 72-73 22.027455092136538 27.995465661249696 27.84954446200047 22.127534784613296 74-75 21.894535964085883 28.12124123964925 27.813835933892385 22.17038686237248 76-77 21.99634976196502 28.030407779268273 27.762326999120525 22.210915459646177 78-79 22.003806263995017 28.06351689424545 27.68456540341333 22.248111438346204 80-81 21.99505297205485 28.067061976364442 27.764517944972454 22.173367106608254 82-83 22.021277017956116 27.957838108144443 27.883120461265015 22.137764412634418 84-85 22.17548906744847 28.01097842641194 27.761662694481515 22.05186981165808 86-87 21.94725284901934 28.005178901851973 27.821082119787928 22.22648612934076 88-89 22.052710279268304 27.895569628242136 27.8501355772566 22.20158451523296 90-91 22.09053105334355 27.954820093954563 27.90025248213903 22.054396370562852 92-93 22.19106402078988 27.896599498539732 27.865681261024733 22.046655219645654 94-95 21.98282620219488 27.924318304934197 27.8892047881986 22.203650704672324 96-97 21.8813772530912 27.94592980657407 28.026306245835574 22.14638669449915 98-99 22.13857708824016 28.541809357016323 28.061707065501796 21.257906489241712 100-101 22.70283185177588 31.24023495918813 25.20173446528597 20.855198723750018 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2406.0 1 2189.0 2 3183.0 3 4641.5 4 6415.5 5 9918.0 6 12536.0 7 14511.0 8 15757.5 9 15470.5 10 13995.5 11 12548.0 12 13793.5 13 18761.0 14 30625.5 15 46747.0 16 59126.5 17 64936.5 18 65133.5 19 60998.0 20 54685.0 21 48797.0 22 46346.0 23 50031.0 24 59414.5 25 74670.0 26 94164.5 27 115016.5 28 135581.5 29 157691.5 30 178268.0 31 197169.5 32 218937.5 33 240694.0 34 261571.0 35 280052.5 36 299489.0 37 316139.5 38 325065.5 39 329487.5 40 335223.5 41 341908.0 42 344504.0 43 348497.0 44 354431.0 45 360633.0 46 365714.0 47 364942.0 48 358344.5 49 350799.0 50 341393.5 51 329485.5 52 315287.0 53 298962.5 54 282509.5 55 262039.0 56 239109.0 57 214192.5 58 188439.0 59 164071.0 60 137851.5 61 111027.0 62 85809.5 63 63963.5 64 46477.0 65 34135.5 66 25895.5 67 19497.0 68 14312.5 69 9827.5 70 6666.0 71 4785.5 72 3290.0 73 2195.0 74 1437.0 75 921.0 76 600.0 77 392.0 78 250.5 79 152.5 80 94.5 81 61.0 82 45.5 83 35.5 84 26.5 85 16.5 86 10.0 87 8.0 88 5.0 89 3.5 90 3.5 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.1095638859146413E-5 2 0.007877903589993953 3 1.1095638859146413E-5 4 4.438255543658565E-5 5 1.1095638859146413E-5 6 1.1095638859146413E-5 7 1.1095638859146413E-5 8 0.0 9 0.0 10-11 6.879296092670775E-4 12-13 0.0 14-15 8.044338172881148E-4 16-17 7.711469007106756E-4 18-19 0.0 20-21 4.1055232658616475E-4 22-23 0.0013039047397159229 24-25 0.004345528692393788 26-27 0.017072785197545452 28-29 0.32050276075672984 30-31 0.30780638168692204 32-33 0.3176677617163306 34-35 0.18278339275281394 36-37 0.04377704571079435 38-39 0.03414952374348517 40-41 0.030314157965834497 42-43 0.026741778798784574 44-45 0.01460748572464756 46-47 0.007655316165729975 48-49 0.00577381702483677 50-51 0.002288501528635368 52-53 0.0017828586572544577 54-55 0.0014264167155644339 56-57 5.509125529771284E-4 58-59 0.0027296409237648343 60-61 0.002336691730541433 62-63 3.8977928308022195E-4 64-65 2.0301568378632373E-4 66-67 0.00823442939889947 68-69 0.007684960390082633 70-71 0.009725589261484403 72-73 0.010113308691473933 74-75 0.008024715858019229 76-77 0.0053633494036171075 78-79 4.017041242145408E-4 80-81 6.677871722352545E-4 82-83 7.241244065226063E-4 84-85 0.0 86-87 0.0018449942669830656 88-89 0.001435346304343906 90-91 0.0011552436105340376 92-93 0.011939871430811414 94-95 1.2066486036398404E-4 96-97 3.0733740391480234E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 171.0 20-21 688.0 22-23 1383.0 24-25 3725.0 26-27 4646.0 28-29 8123.0 30-31 21890.0 32-33 28807.0 34-35 40014.0 36-37 54058.0 38-39 61784.0 40-41 65499.0 42-43 77298.0 44-45 91034.0 46-47 89932.0 48-49 77895.0 50-51 68849.0 52-53 62780.0 54-55 67498.0 56-57 72300.0 58-59 71769.0 60-61 71916.0 62-63 70643.0 64-65 76560.0 66-67 80710.0 68-69 78457.0 70-71 76592.0 72-73 73371.0 74-75 74848.0 76-77 75691.0 78-79 80204.0 80-81 82344.0 82-83 80165.0 84-85 81113.0 86-87 85234.0 88-89 91919.0 90-91 99478.0 92-93 104171.0 94-95 116888.0 96-97 172395.0 98-99 750157.0 100-101 5619551.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.03836224859359 #Duplication Level Percentage of deduplicated Percentage of total 1 88.19340872276172 72.352428127362 2 7.73388026470307 12.689497414859188 3 2.141234608383836 5.269901413854557 4 0.8720820419922414 2.861767298858108 5 0.38692160786595964 1.5871207513957937 6 0.21656762679084174 1.0660112050791177 7 0.1362313498600787 0.782333778060522 8 0.08528347720433292 0.5597213437366991 9 0.05942264164225157 0.4387442580733857 >10 0.1719565474792361 2.135412300697376 >50 0.002476054098532934 0.13408666284983514 >100 4.61549562005006E-4 0.07254080834821754 >500 4.9005121873693574E-5 0.026875705100749027 >1k 2.4502533972708037E-5 0.023558931724480696 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.328691657743924E-5 0.0 0.0 0.0 3 0.0 3.328691657743924E-5 0.0 0.0 0.0 4 0.0 1.775302217463426E-4 0.0 0.0 0.0 5 0.0 1.775302217463426E-4 0.0 0.0 0.0 6 0.0 1.775302217463426E-4 0.0 0.0 1.1095638859146413E-5 7 0.0 1.775302217463426E-4 0.0 0.0 1.1095638859146413E-5 8 0.0 1.9972149946463543E-4 0.0 0.0 1.1095638859146413E-5 9 0.0 3.661560823518316E-4 0.0 0.0 1.1095638859146413E-5 10-11 0.0 3.661560823518316E-4 0.0 1.1095638859146413E-5 1.1095638859146413E-5 12-13 0.0 3.661560823518316E-4 0.0 1.664345828871962E-5 1.1095638859146413E-5 14-15 0.0 4.993037486615885E-4 0.0 3.328691657743924E-5 2.7739097147866032E-5 16-17 0.0 4.993037486615885E-4 0.0 7.212165258445168E-5 3.328691657743924E-5 18-19 0.0 5.38138484668601E-4 0.0 1.4424330516890337E-4 3.328691657743924E-5 20-21 0.0 5.769732206756135E-4 0.0 2.718431520490871E-4 3.328691657743924E-5 22-23 0.0 6.324514149713455E-4 0.0 9.209380253091523E-4 3.8834736007012445E-5 24-25 0.0 6.879296092670776E-4 0.0 0.0023189885215616005 4.993037486615886E-5 26-27 0.0 6.99025248126224E-4 0.0 0.006041575358805222 5.5478194295732064E-5 28-29 0.0 7.156687064149436E-4 0.0 0.025769621250367546 5.5478194295732064E-5 30-31 0.0 8.931989281612862E-4 0.0 0.03624945215283133 5.5478194295732064E-5 32-33 0.0 9.264858447387255E-4 0.0 0.040027517184370684 6.657383315487848E-5 34-35 0.0 0.0010929204276259217 0.0 0.04533678037847224 6.657383315487848E-5 36-37 0.0 0.0012538071910835446 0.0 0.05253784999805826 6.657383315487848E-5 38-39 0.0 0.0012981897465201302 0.0 0.06533112160265409 6.657383315487848E-5 40-41 0.0 0.0014202417739707408 0.0 0.09086218661754997 6.657383315487848E-5 42-43 0.0 0.0014646243294073264 0.0 0.10267349418311134 6.657383315487848E-5 44-45 0.0 0.0016310589122945228 0.0 0.11792999761443765 7.212165258445168E-5 46-47 0.0 0.0017531109397451333 0.0 0.13627108864860665 8.32172914435981E-5 48-49 0.0 0.0017531109397451333 0.0 0.15252619957725616 9.986074973231771E-5 50-51 0.0 0.0019528324392097686 0.0 0.16724456452391387 9.986074973231771E-5 52-53 0.0 0.0019750237169280614 0.0 0.18783252242706006 1.0540856916189092E-4 54-55 0.0 0.001991667175216781 0.0 0.22810414366633194 1.1650420802103733E-4 56-57 0.0 0.002063788827801233 0.0 0.2701344236647786 1.2759984688018376E-4 58-59 0.0 0.002063788827801233 0.0 0.3042868000732312 1.3869548573933015E-4 60-61 0.0 0.002080432286089952 0.0 0.32549611375248955 1.4424330516890337E-4 62-63 0.0 0.0021303626609561113 0.0 0.3440480219249824 1.664345828871962E-4 64-65 0.0 0.0025686403958923945 0.0 0.35329068909465133 1.664345828871962E-4 66-67 0.0 0.002585283854181114 0.0 0.35892172581566817 1.719824023167694E-4 68-69 0.0 0.002696240242772578 0.0 0.3645194756201075 1.775302217463426E-4 70-71 0.0 0.002735074978779591 0.0 0.3698675735502161 1.8862586060548902E-4 72-73 0.0 0.0027517184370683106 0.0 0.37420042052471275 1.8862586060548902E-4 74-75 0.0 0.0028349357285119086 0.0 0.3774015123355765 1.8862586060548902E-4 76-77 0.0 0.002951439936532946 0.0 0.38045281302184175 1.8862586060548902E-4 78-79 0.0 0.0030346572279765435 0.0 0.38337651386122684 1.8862586060548902E-4 80-81 0.0 0.003051300686265263 0.0 0.38460812977459213 1.8862586060548902E-4 82-83 0.0 0.0030790397834131295 0.0 0.3850186684123805 1.9972149946463543E-4 84-85 0.0 0.003095683241701849 0.0 0.38526277246728174 1.9972149946463543E-4 86-87 5.547819429573206E-6 0.003128970158279288 0.0 0.3853293463004366 1.9972149946463543E-4 88-89 1.1095638859146413E-5 0.0033065003800256307 0.0 0.38536263321701403 1.9972149946463543E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12730 0.0 48.36599 1 GTATCAA 23915 0.0 37.68516 1 TCAACGC 29820 0.0 29.523167 4 ATCAACG 29880 0.0 29.4495 3 CAACGCA 30330 0.0 29.027054 5 AACGCAG 30915 0.0 28.573988 6 TATCAAC 31220 0.0 28.513544 2 CGCAGAG 35660 0.0 24.676548 8 ACGCAGA 35800 0.0 24.615652 7 GCAGAGT 41195 0.0 21.31996 9 TACATGG 27195 0.0 20.202705 2 GTACATG 27835 0.0 20.165625 1 AGAGTAC 37240 0.0 19.830523 10-11 GAGTACT 24625 0.0 19.6189 12-13 ACATGGG 27345 0.0 19.531506 3 AGTACTT 26685 0.0 18.398956 12-13 CAGAGTA 40250 0.0 18.321154 10-11 CATGGGG 20740 0.0 17.434185 4 GTACTTT 28380 0.0 16.934252 14-15 TGGTATC 6535 0.0 16.90549 2 >>END_MODULE