##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139048_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9207076 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68213013556095 34.0 31.0 34.0 31.0 34.0 2 32.82419945268183 34.0 31.0 34.0 31.0 34.0 3 32.86948494831584 34.0 31.0 34.0 31.0 34.0 4 36.332538582281714 37.0 37.0 37.0 35.0 37.0 5 36.27061381919732 37.0 37.0 37.0 35.0 37.0 6 36.30463786765744 37.0 37.0 37.0 35.0 37.0 7 36.25660111853101 37.0 37.0 37.0 35.0 37.0 8 36.23774670698928 37.0 37.0 37.0 35.0 37.0 9 37.91839341827959 39.0 38.0 39.0 35.0 39.0 10-11 37.89032614697652 39.0 38.0 39.0 35.0 39.0 12-13 37.86131867489744 39.0 38.0 39.0 35.0 39.0 14-15 39.27616482149165 41.0 39.0 41.0 36.0 41.0 16-17 39.26159195384072 41.0 39.0 41.0 36.0 41.0 18-19 39.29607722364842 41.0 39.0 41.0 36.0 41.0 20-21 39.21700085411341 41.0 39.0 41.0 36.0 41.0 22-23 39.210169347240324 40.5 39.0 41.0 36.0 41.0 24-25 39.11102505920627 40.0 39.0 41.0 35.5 41.0 26-27 38.96953096658232 40.0 39.0 41.0 35.0 41.0 28-29 38.835613104184915 40.0 38.0 41.0 35.0 41.0 30-31 38.71136217541869 40.0 38.0 41.0 35.0 41.0 32-33 38.618758790443195 40.0 38.0 41.0 35.0 41.0 34-35 38.4747756616209 40.0 38.0 41.0 34.5 41.0 36-37 38.61092249960197 40.0 38.0 41.0 35.0 41.0 38-39 38.66607369371495 40.0 38.0 41.0 35.0 41.0 40-41 38.65794283134704 40.0 38.0 41.0 35.0 41.0 42-43 38.628656260340996 40.0 38.0 41.0 35.0 41.0 44-45 38.55513565736658 40.0 38.0 41.0 34.0 41.0 46-47 38.48576511576995 40.0 38.0 41.0 34.0 41.0 48-49 38.39981286925041 40.0 38.0 41.0 34.0 41.0 50-51 38.2905084360236 40.0 38.0 41.0 34.0 41.0 52-53 38.18247728950841 40.0 37.5 41.0 34.0 41.0 54-55 38.044392555683295 40.0 37.0 41.0 33.0 41.0 56-57 37.88036887378766 40.0 37.0 41.0 33.0 41.0 58-59 37.68928376839682 39.5 36.0 41.0 33.0 41.0 60-61 37.45839487506132 39.0 36.0 41.0 33.0 41.0 62-63 37.26028651978434 39.0 35.0 40.0 32.5 41.0 64-65 37.02988846937279 38.5 35.0 40.0 32.0 41.0 66-67 36.7548999658248 38.0 35.0 40.0 32.0 41.0 68-69 36.408233241474726 37.0 35.0 40.0 31.0 41.0 70-71 36.1389665820526 37.0 35.0 39.5 31.0 41.0 72-73 35.81861508310321 36.0 34.5 39.0 31.0 40.5 74-75 35.49215858678562 36.0 34.0 39.0 31.0 40.0 76-77 34.47288418322928 35.0 33.5 37.0 29.5 39.0 78-79 34.767082601292046 35.0 34.0 37.0 30.5 39.0 80-81 34.60378340866278 35.0 34.0 37.0 30.5 39.0 82-83 34.33033340324303 35.0 34.0 36.0 30.0 38.5 84-85 34.06837333237132 35.0 34.0 36.0 30.0 37.0 86-87 33.84532394410603 35.0 34.0 35.5 30.0 37.0 88-89 33.66236656518292 35.0 33.0 35.0 30.0 36.5 90-91 33.4735983495989 35.0 33.0 35.0 30.0 36.0 92-93 33.333999909943955 35.0 33.0 35.0 29.5 36.0 94-95 33.24457776222555 34.0 33.0 35.0 29.0 35.5 96-97 33.224335333374256 34.0 33.0 35.0 29.5 35.0 98-99 33.231529510722496 34.0 33.0 35.0 30.0 35.0 100-101 32.23841867364416 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 0.0 14 1.0 15 1.0 16 1.0 17 1.0 18 1.0 19 8.0 20 34.0 21 243.0 22 1130.0 23 3710.0 24 9664.0 25 19741.0 26 34821.0 27 55225.0 28 79637.0 29 106988.0 30 138178.0 31 173374.0 32 220487.0 33 287249.0 34 407456.0 35 592422.0 36 1030763.0 37 2094765.0 38 2707170.0 39 1197233.0 40 46772.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.522933561737425 21.555360584698242 15.35683323496694 24.5648726185974 2 13.470368265948235 21.947841943664397 41.72644506848144 22.855344721905926 3 16.242217668718638 27.60716379601163 32.02777559950099 24.122842935768738 4 11.663113237979076 19.433793812798207 39.31212644196253 29.59096650726018 5 12.51552882055689 38.30728415998394 36.12779695264749 13.049390066811672 6 28.43816613182429 39.044206661095586 19.21760376858055 13.300023438499572 7 24.99888672557644 33.4515721281267 23.965203277393012 17.584337868903845 8 24.05544387816501 36.76984962435414 21.738454206308276 17.436252291172572 9 25.434187792085133 16.646196903338257 21.49693344553689 36.42268185903973 10-11 23.48520085984535 27.0649536448038 29.535990777456444 19.913854717894402 12-13 24.612936247396703 24.80487559838494 29.402578994957686 21.179609159260675 14-15 21.8167584944177 25.998048767772136 27.164400140002133 25.02079259780803 16-17 21.179576662621017 29.219605742648273 27.713834024120654 21.88698357061006 18-19 21.308470860263935 28.135475808795096 29.68423578149218 20.87181754944879 20-21 22.13705170299342 27.215831325659767 29.534301918840278 21.112815052506534 22-23 21.85071739691038 27.422451548036143 29.366059151924162 21.36077190312931 24-25 21.82430137422715 27.536682022782742 29.450944782524317 21.188071820465787 26-27 21.749368324519345 27.771206252161733 29.32905553922715 21.15036988409177 28-29 21.590147283521937 27.68201614883378 29.419734443751818 21.308102123892464 30-31 21.6328064139814 27.676267688787128 29.521740714344276 21.1691851828872 32-33 21.663251758345083 27.745961708666673 29.36527613001811 21.225510402970134 34-35 21.845244949211935 27.567182756130464 29.421748116625995 21.1658241780316 36-37 21.555146899070323 27.828056379468148 29.23400186687637 21.382794854585157 38-39 21.51664802254852 27.56167633899574 29.38118487028704 21.540490768168706 40-41 21.572542286668263 27.507563304637973 29.327946797822918 21.591947610870843 42-43 21.68762201017428 27.587701104485923 29.16960983288965 21.55506705245015 44-45 21.674844302535295 27.824275500511277 28.85832529645633 21.642554900497103 46-47 21.930851645050335 27.60891742067854 28.387128229292646 22.073102704978474 48-49 21.859249910958628 27.776133852866398 28.381041566488484 21.983574669686494 50-51 21.723300970873787 27.970498035197622 28.339737315532343 21.96646367839625 52-53 21.8288065831013 27.97168755486551 28.319238603543223 21.880267258489965 54-55 21.805607952957878 27.966384676612734 28.155050949274685 22.072956421154704 56-57 22.04189834103613 28.105720234007258 27.878927553972037 21.973453870984567 58-59 21.71932660556371 28.383079615675438 28.22134930753903 21.676244471221818 60-61 22.062723130183482 28.45043776256736 27.78453010448891 21.702309002760252 62-63 21.82560586117927 28.599337892595205 27.763117202696957 21.811939043528568 64-65 21.82640527649711 28.456779439550488 27.852962397234567 21.863852886717837 66-67 21.942205728306856 28.352513204665442 27.715290052096282 21.989991014931423 68-69 21.942648220408163 28.14975447103023 27.86725169704034 22.040345611521268 70-71 21.9302745993437 27.989933318523086 27.935195416496406 22.144596665636808 72-73 22.02226803202652 27.955620285765654 27.884522673028698 22.137589009179123 74-75 21.949329914482178 28.048896808869035 27.819347621682017 22.182425654966778 76-77 22.073316872458495 28.025288172333152 27.72729505476006 22.174099900448294 78-79 22.02325522452768 27.989333837653728 27.72352239351743 22.26388854430116 80-81 22.046604749006605 27.962058459452365 27.820188703135607 22.171148088405424 82-83 22.0532923417482 27.898270763200316 27.941266539360893 22.107170355690588 84-85 22.172016627628494 27.934883069665844 27.810300949515355 22.08279935319031 86-87 22.057511083781208 27.972570918512655 27.80301273035662 22.166905267349513 88-89 22.09159986371646 27.850244660659225 27.848277127225668 22.209878348398647 90-91 22.12092173537471 27.913544114243443 27.86249262790861 22.103041522473234 92-93 22.213298251356967 27.835465394986265 27.848041110362892 22.10319524329388 94-95 22.009774532249967 27.875846733086963 27.94845712165086 22.16592161301221 96-97 21.9480011390525 27.910370241756517 28.004503202794563 22.137125416396422 98-99 22.217474131510066 28.48307653750139 28.017083114115472 21.282366216873072 100-101 22.76705798932944 31.12388904561336 25.232118382455145 20.876934582602054 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2561.0 1 2364.0 2 3395.5 3 4866.0 4 6443.5 5 9679.0 6 12332.5 7 14950.0 8 17130.0 9 17259.5 10 15676.5 11 13898.0 12 14915.5 13 19749.0 14 31520.0 15 47569.5 16 59971.0 17 66000.5 18 66157.5 19 62293.0 20 56569.5 21 51249.5 22 49123.5 23 52842.5 24 62343.0 25 77246.5 26 95919.0 27 115346.0 28 136053.0 29 159022.5 30 179085.0 31 197588.5 32 218716.5 33 238872.5 34 257515.0 35 274479.5 36 293388.0 37 309620.5 38 318046.0 39 322810.0 40 329128.5 41 337695.5 42 343935.0 43 350754.0 44 358967.0 45 368615.0 46 379974.5 47 386502.5 48 380958.5 49 372392.5 50 364788.5 51 349978.5 52 330142.5 53 311004.0 54 292285.0 55 270016.5 56 245940.0 57 220632.5 58 194568.5 59 167643.5 60 140437.5 61 115531.5 62 91567.5 63 69612.5 64 51877.0 65 39570.0 66 30720.5 67 23440.0 68 17809.0 69 12547.5 70 8470.0 71 6020.5 72 4198.5 73 2884.0 74 1951.0 75 1257.0 76 835.0 77 534.5 78 332.5 79 217.5 80 147.5 81 103.0 82 78.5 83 59.0 84 42.5 85 31.5 86 26.0 87 22.5 88 17.0 89 11.5 90 6.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.1722423058091407E-5 2 0.007744043820209587 3 2.1722423058091407E-5 4 6.516726917427421E-5 5 2.1722423058091407E-5 6 2.1722423058091407E-5 7 2.1722423058091407E-5 8 0.0 9 0.0 10-11 7.765766243267678E-4 12-13 1.0861211529045703E-5 14-15 7.982990473848592E-4 16-17 7.548542012686764E-4 18-19 5.430605764522852E-6 20-21 4.23600039883573E-4 22-23 0.0011405571589133945 24-25 0.004525354671276988 26-27 0.016712152707879614 28-29 0.32161602126952793 30-31 0.30954518185745405 32-33 0.3186263658486428 34-35 0.18468890467969679 36-37 0.04626773256953316 38-39 0.03555749194360752 40-41 0.03203614471611439 42-43 0.027926033512027337 44-45 0.014805866936853403 46-47 0.007616734631302153 48-49 0.005596821329938006 50-51 0.0022154099826607633 52-53 0.0017852423033372954 54-55 0.0013062071319146894 56-57 4.312198628972381E-4 58-59 0.00266611208311015 60-61 0.00243529500516722 62-63 3.2041128979038385E-4 64-65 8.090718613893108E-5 66-67 0.007619643503873246 68-69 0.006687929318450367 70-71 0.008981790304192728 72-73 0.00956317519230552 74-75 0.007453106391815506 76-77 0.00478603795559788 78-79 3.744939399858749E-4 80-81 5.137732814503442E-4 82-83 6.220335918646208E-4 84-85 0.0 86-87 0.0019853867148826687 88-89 0.00159240278080236 90-91 0.0011116735621506566 92-93 0.01156279002482689 94-95 1.4045972764563106E-4 96-97 4.517657263414054E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 175.0 20-21 575.0 22-23 1410.0 24-25 4021.0 26-27 4531.0 28-29 8168.0 30-31 22695.0 32-33 29194.0 34-35 40449.0 36-37 54811.0 38-39 62990.0 40-41 66695.0 42-43 78331.0 44-45 91839.0 46-47 90934.0 48-49 78853.0 50-51 69460.0 52-53 63733.0 54-55 69978.0 56-57 78153.0 58-59 78659.0 60-61 77922.0 62-63 79394.0 64-65 83250.0 66-67 92008.0 68-69 82666.0 70-71 76390.0 72-73 73585.0 74-75 74616.0 76-77 75109.0 78-79 79746.0 80-81 81734.0 82-83 80393.0 84-85 81396.0 86-87 86104.0 88-89 91330.0 90-91 99465.0 92-93 103929.0 94-95 116955.0 96-97 173105.0 98-99 765477.0 100-101 5736848.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.71236367156732 #Duplication Level Percentage of deduplicated Percentage of total 1 88.25301732648512 72.11362646894884 2 7.628859859242711 12.467443424357244 3 2.126417397508945 5.212637751083959 4 0.8512630416175613 2.7823486094727485 5 0.4095040279797608 1.6730771029626945 6 0.2385576632291748 1.1695866320652968 7 0.1320780508076898 0.7554686804440787 8 0.0835797255833724 0.5463597545950659 9 0.06293182384090475 0.4628077268582717 >10 0.2102355439793092 2.5788934790573883 >50 0.0031559140787238054 0.16575934893045693 >100 3.4951277358890524E-4 0.04545645682943978 >500 5.011287314701529E-5 0.02653456439452154 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.0861211529045703E-5 0.0 3 0.0 0.0 0.0 2.1722423058091407E-5 0.0 4 0.0 1.0861211529045703E-5 0.0 3.2583634587137114E-5 0.0 5 0.0 1.0861211529045703E-5 0.0 3.2583634587137114E-5 0.0 6 0.0 1.0861211529045703E-5 0.0 4.3444846116182814E-5 0.0 7 0.0 1.0861211529045703E-5 0.0 8.688969223236563E-5 0.0 8 0.0 3.2583634587137114E-5 0.0 1.0861211529045704E-4 0.0 9 0.0 8.688969223236563E-5 0.0 2.3894665363900547E-4 0.0 10-11 0.0 8.688969223236563E-5 0.0 2.5523847093257405E-4 0.0 12-13 0.0 8.688969223236563E-5 0.0 2.715302882261426E-4 0.0 14-15 0.0 1.1947332681950273E-4 0.0 2.823914997551883E-4 5.430605764522852E-6 16-17 0.0 1.1947332681950273E-4 0.0 3.0954452857780254E-4 1.0861211529045703E-5 18-19 0.0 1.3033453834854843E-4 0.0 3.964342208101682E-4 1.0861211529045703E-5 20-21 0.0 1.4119574987759415E-4 0.0 5.48491182216808E-4 1.0861211529045703E-5 22-23 5.430605764522852E-6 1.6291817293568556E-4 0.0 9.775090376141133E-4 1.0861211529045703E-5 24-25 1.0861211529045703E-5 1.9550180752282264E-4 0.0 0.0023025768441576893 1.0861211529045703E-5 26-27 1.0861211529045703E-5 2.0636301905186836E-4 0.0 0.005691274841219949 1.0861211529045703E-5 28-29 1.0861211529045703E-5 2.0636301905186836E-4 0.0 0.026783747630626704 1.0861211529045703E-5 30-31 1.0861211529045703E-5 2.3894665363900547E-4 0.0 0.03698242525640062 1.0861211529045703E-5 32-33 1.0861211529045703E-5 2.606690766970969E-4 0.0 0.04093590625297326 1.0861211529045703E-5 34-35 3.2583634587137114E-5 2.8782210551971116E-4 0.0 0.045709408719988846 2.715302882261426E-5 36-37 3.2583634587137114E-5 3.149751343423254E-4 0.0 0.052160968368241994 3.801424035165997E-5 38-39 3.2583634587137114E-5 3.366975574004168E-4 0.0 0.06449930466523791 4.3444846116182814E-5 40-41 3.2583634587137114E-5 3.5841998045850823E-4 0.0 0.08918140786499427 4.3444846116182814E-5 42-43 3.2583634587137114E-5 3.6928119198755395E-4 0.0 0.10060740239355034 4.3444846116182814E-5 44-45 3.2583634587137114E-5 4.181566438682596E-4 0.0 0.11569905581315935 4.3444846116182814E-5 46-47 3.2583634587137114E-5 4.5617088421991955E-4 0.0 0.13301725759622274 4.3444846116182814E-5 48-49 3.2583634587137114E-5 4.616014899844424E-4 0.0 0.14860309614040332 5.430605764522852E-5 50-51 3.2583634587137114E-5 5.376299706877623E-4 0.0 0.16216331873441686 5.430605764522852E-5 52-53 3.2583634587137114E-5 5.430605764522852E-4 0.0 0.18152342828494084 5.430605764522852E-5 54-55 3.2583634587137114E-5 5.48491182216808E-4 0.0 0.22064008160679893 5.430605764522852E-5 56-57 3.2583634587137114E-5 5.647829995103766E-4 0.0 0.2603866851973417 5.430605764522852E-5 58-59 3.801424035165997E-5 5.702136052748994E-4 0.0 0.29177558651628377 5.430605764522852E-5 60-61 4.3444846116182814E-5 5.86505422568468E-4 0.0 0.3119774399603088 5.430605764522852E-5 62-63 4.3444846116182814E-5 5.973666340975136E-4 0.0 0.3287905954072715 5.430605764522852E-5 64-65 4.3444846116182814E-5 6.733951148008336E-4 0.0 0.3374361197843919 5.430605764522852E-5 66-67 4.3444846116182814E-5 6.733951148008336E-4 0.0 0.3431545476544345 5.430605764522852E-5 68-69 4.3444846116182814E-5 7.059787493879707E-4 0.0 0.3487154879573059 5.430605764522852E-5 70-71 4.3444846116182814E-5 7.277011724460622E-4 0.0 0.353972314337364 5.430605764522852E-5 72-73 5.430605764522852E-5 7.277011724460622E-4 0.0 0.3584145498527437 5.430605764522852E-5 74-75 5.430605764522852E-5 7.494235955041535E-4 0.0 0.3618955681478029 5.430605764522852E-5 76-77 5.430605764522852E-5 7.765766243267678E-4 0.0 0.36484438707793876 5.430605764522852E-5 78-79 5.430605764522852E-5 7.820072300912907E-4 0.0 0.3675922735947873 5.430605764522852E-5 80-81 5.430605764522852E-5 7.820072300912907E-4 0.0 0.3688467435263921 5.9736663409751374E-5 82-83 5.430605764522852E-5 7.928684416203364E-4 0.0 0.3692431777472023 6.516726917427423E-5 84-85 5.430605764522852E-5 7.928684416203364E-4 0.0 0.36950384682389936 6.516726917427423E-5 86-87 5.430605764522852E-5 7.928684416203364E-4 0.0 0.36962332015071886 6.516726917427423E-5 88-89 5.430605764522852E-5 8.254520762074734E-4 0.0 0.3696396119680124 6.516726917427423E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13700 0.0 50.860638 1 GTATCAA 24730 0.0 36.869232 1 CTTATAC 10960 0.0 29.268124 1 TCAACGC 31225 0.0 28.736317 4 ATCAACG 31370 0.0 28.562704 3 CAACGCA 31570 0.0 28.355303 5 TATCAAC 32370 0.0 27.891684 2 AACGCAG 32630 0.0 27.460209 6 TATACAC 14555 0.0 24.314764 3 ACGCAGA 37275 0.0 24.026875 7 CGCAGAG 37560 0.0 23.889809 8 TTATACA 15025 0.0 22.000048 2 GCAGAGT 43325 0.0 20.652431 9 GTACATG 28775 0.0 20.05132 1 TACATGG 28245 0.0 19.81083 2 GAGTACT 26505 0.0 19.411781 12-13 ACATCTC 16675 0.0 19.312908 8 AGAGTAC 39915 0.0 19.30341 10-11 TACACAT 18365 0.0 19.131935 5 ACACATC 16855 0.0 18.95542 6 >>END_MODULE