##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139047_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9143576 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67744731382995 34.0 31.0 34.0 31.0 34.0 2 32.81951087845718 34.0 31.0 34.0 31.0 34.0 3 32.86620890994946 34.0 31.0 34.0 31.0 34.0 4 36.32864592583908 37.0 37.0 37.0 35.0 37.0 5 36.26775618204519 37.0 37.0 37.0 35.0 37.0 6 36.30403837623267 37.0 37.0 37.0 35.0 37.0 7 36.25795706187601 37.0 37.0 37.0 35.0 37.0 8 36.24007051508075 37.0 37.0 37.0 35.0 37.0 9 37.91922547589696 39.0 38.0 39.0 35.0 39.0 10-11 37.89195928376381 39.0 38.0 39.0 35.0 39.0 12-13 37.8657316349752 39.0 38.0 39.0 35.0 39.0 14-15 39.27995512915297 41.0 39.0 41.0 36.0 41.0 16-17 39.266633207839035 41.0 39.0 41.0 36.0 41.0 18-19 39.30310520741557 41.0 39.0 41.0 36.0 41.0 20-21 39.224215405255784 41.0 39.0 41.0 36.0 41.0 22-23 39.21710632007567 40.5 39.0 41.0 36.0 41.0 24-25 39.123031294076824 40.0 39.0 41.0 36.0 41.0 26-27 38.98440080562892 40.0 39.0 41.0 35.0 41.0 28-29 38.85376957548901 40.0 38.5 41.0 35.0 41.0 30-31 38.730275933941854 40.0 38.0 41.0 35.0 41.0 32-33 38.63851157522873 40.0 38.0 41.0 35.0 41.0 34-35 38.49671084053304 40.0 38.0 41.0 34.5 41.0 36-37 38.630626725243246 40.0 38.0 41.0 35.0 41.0 38-39 38.690253858482336 40.0 38.0 41.0 35.0 41.0 40-41 38.679045171890465 40.0 38.0 41.0 35.0 41.0 42-43 38.64881189438931 40.0 38.0 41.0 35.0 41.0 44-45 38.57947442613554 40.0 38.0 41.0 34.5 41.0 46-47 38.51586423450813 40.0 38.0 41.0 34.0 41.0 48-49 38.435728903958406 40.0 38.0 41.0 34.0 41.0 50-51 38.3357140454943 40.0 38.0 41.0 34.0 41.0 52-53 38.22981595427977 40.0 37.5 41.0 34.0 41.0 54-55 38.09823593640707 40.0 37.0 41.0 33.0 41.0 56-57 37.9440180909583 40.0 37.0 41.0 33.0 41.0 58-59 37.75897126710074 39.5 36.5 41.0 33.0 41.0 60-61 37.53532140220911 39.0 36.0 41.0 33.0 41.0 62-63 37.34350435475248 39.0 35.5 40.5 33.0 41.0 64-65 37.11449486123365 38.5 35.0 40.0 32.0 41.0 66-67 36.84361199136248 38.0 35.0 40.0 32.0 41.0 68-69 36.49851171777938 37.5 35.0 40.0 31.5 41.0 70-71 36.22681719921101 37.0 35.0 39.5 31.0 41.0 72-73 35.90286091660326 36.5 35.0 39.0 31.0 40.5 74-75 35.57242427865981 36.0 34.0 39.0 31.0 40.0 76-77 34.543624808304784 35.0 33.5 37.0 29.5 39.0 78-79 34.83298434432176 35.0 34.0 37.0 30.5 39.0 80-81 34.66547298704918 35.0 34.0 37.0 31.0 39.0 82-83 34.386284907347886 35.0 34.0 36.0 30.0 38.5 84-85 34.114609578380716 35.0 34.0 36.0 30.0 37.0 86-87 33.88187838883704 35.0 34.0 35.5 30.0 37.0 88-89 33.692136918471576 35.0 33.0 35.0 30.0 36.5 90-91 33.50219236909065 35.0 33.0 35.0 30.0 36.0 92-93 33.360462565634634 35.0 33.0 35.0 30.0 36.0 94-95 33.267488505571364 34.0 33.0 35.0 29.5 35.5 96-97 33.24400375128061 34.0 33.0 35.0 30.0 35.0 98-99 33.25162429850374 34.0 33.0 35.0 30.0 35.0 100-101 32.25496192018387 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 0.0 18 0.0 19 9.0 20 46.0 21 238.0 22 1096.0 23 3672.0 24 9401.0 25 19323.0 26 34411.0 27 54595.0 28 78272.0 29 105153.0 30 135544.0 31 170624.0 32 215083.0 33 280872.0 34 394702.0 35 575958.0 36 994613.0 37 2048051.0 38 2740694.0 39 1231932.0 40 49285.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.80322945929021 21.658215923007788 15.299203571819946 24.23935104588206 2 13.366638823376158 22.28901160547869 41.95790650101276 22.38644307013239 3 16.234166202406193 27.998351629242567 32.089082452878934 23.67839971547231 4 11.445316678139204 19.580811616989156 39.87423298591995 29.09963871895169 5 12.342307285969358 38.53634257239018 36.22375670607577 12.89759343556469 6 27.932447421544353 39.51427527135451 19.498185282910164 13.055092024190978 7 24.770215672777407 33.67982804098266 24.216766879121884 17.33318940711805 8 23.78373625373705 36.95259928938087 21.959296887782198 17.30436756909988 9 25.363665156827043 16.758301128573766 21.672352261303455 36.20568145329573 10-11 23.247955284565517 27.21904537858248 29.82586719027306 19.70713214657895 12-13 24.434143709200864 25.089407032872042 29.645272265468126 20.831176992458968 14-15 21.661450213955128 26.241547826402694 27.409152462961146 24.687849496681032 16-17 20.959660489038967 29.469816523850344 27.939402228106303 21.631120759004386 18-19 21.088146594740024 28.378921811217168 29.92067107231034 20.612260521732473 20-21 21.964789402478544 27.544013246901823 29.71438555352735 20.776811797092286 22-23 21.580922559945275 27.739171994221046 29.56048216433946 21.119423281494214 24-25 21.536543158077848 27.81804471341137 29.671135783228653 20.974276345282128 26-27 21.472317091885376 27.958287972122363 29.608875991333555 20.960518944658702 28-29 21.324320723082753 27.89882140507567 29.6478418606889 21.129016011152675 30-31 21.442398602596036 27.911484625136136 29.72310915123414 20.923007621033687 32-33 21.403534016980924 28.01610982467747 29.56968794795457 21.01066821038703 34-35 21.56814342640488 27.902861207605024 29.624795751351872 20.904199614638223 36-37 21.316755013547102 28.06186567522871 29.46679700504103 21.15458230618316 38-39 21.2780827965859 27.874065087630406 29.60495492816657 21.24289718761712 40-41 21.35486884574084 27.80201769733529 29.513254463165943 21.32985899375793 42-43 21.457576464497148 27.864860995590245 29.321926850474426 21.355635689438177 44-45 21.408528565230522 28.0925627208096 29.06557325910996 21.43333545484992 46-47 21.64097787561051 27.929180472515146 28.63499088207678 21.79485076979756 48-49 21.598590770761934 28.08496562538923 28.55222931069637 21.764214293152467 50-51 21.521332464985225 28.260786765536533 28.48607023600282 21.731810533475425 52-53 21.610813492593365 28.266168875215648 28.48786054717892 21.635157085012075 54-55 21.6205426652844 28.240644550638315 28.333202355307858 21.805610428769427 56-57 21.77421043039485 28.395669175552275 28.11180351819913 21.71831687585375 58-59 21.51460190252619 28.544688394385638 28.39201450977331 21.548695193314867 60-61 21.800181296240453 28.616446562948493 28.060846436428434 21.522525704382616 62-63 21.61225712820314 28.79732875158199 28.030432798746023 21.55998132146884 64-65 21.606019214264126 28.631404540571058 28.10081428037262 21.66176196479219 66-67 21.671924454122795 28.562958868362948 27.955569731770467 21.80954694574379 68-69 21.719301096240223 28.433862172151798 28.022080114160296 21.824756617447683 70-71 21.713948559167342 28.242830896146963 28.11405303174753 21.92916751293816 72-73 21.757675414864185 28.21100636976994 28.05410469366509 21.977213521700786 74-75 21.688859527145794 28.30004508799951 28.05049301340683 21.96060237144787 76-77 21.78191531570532 28.256073908078218 28.016842489356414 21.94516828686005 78-79 21.766008811274304 28.221530794017852 27.966953375891134 22.045507018816714 80-81 21.812940852631666 28.22499041415548 27.931791973584552 22.030276759628297 82-83 21.841079967173272 28.17535337542097 28.061680524384485 21.921886133021278 84-85 21.934721131968672 28.17068971678423 27.973604691589067 21.920984459658033 86-87 21.803192811734203 28.208518730857758 28.04874989500482 21.939538562403214 88-89 21.84966786835033 28.06675974917799 28.087354129972297 21.99621825249938 90-91 21.908113565287344 28.08453675199264 28.076966542639113 21.930383140080902 92-93 21.99435815169292 28.00980278481867 28.08643153094577 21.909407532542634 94-95 21.762315099326084 28.089245444132537 28.187891942010385 21.960547514530994 96-97 21.758301010227584 28.133499647815796 28.188664414966023 21.9195349269906 98-99 21.978692597306747 28.681826790057112 28.24374164358164 21.095738969054505 100-101 22.512588236363616 31.372362463185844 25.46813517582755 20.646914124622988 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2856.0 1 2539.5 2 3328.5 3 4696.5 4 6350.0 5 9592.0 6 12161.0 7 14482.5 8 16188.0 9 16125.0 10 14707.0 11 13336.5 12 14802.5 13 19889.0 14 31615.0 15 47825.5 16 60608.0 17 66811.5 18 66787.5 19 62397.5 20 56543.0 21 51341.5 22 49513.0 23 53897.5 24 63962.0 25 79370.0 26 99122.5 27 120016.0 28 142480.0 29 165799.5 30 186887.5 31 207964.5 32 230001.5 33 252296.0 34 271022.0 35 285377.0 36 303840.5 37 321417.5 38 331333.5 39 338758.5 40 347690.5 41 356285.5 42 358435.5 43 360127.5 44 364300.5 45 369814.0 46 375721.0 47 377770.5 48 370273.5 49 358498.5 50 348271.5 51 331660.0 52 310558.5 53 288634.5 54 268566.5 55 248545.5 56 226810.0 57 203129.0 58 178418.5 59 153691.5 60 127971.0 61 103264.0 62 81421.5 63 62871.0 64 47246.0 65 35334.5 66 26662.5 67 20404.0 68 15553.5 69 11096.5 70 7698.5 71 5517.5 72 3901.5 73 2731.5 74 1857.5 75 1234.0 76 795.0 77 500.5 78 333.5 79 203.5 80 134.5 81 96.5 82 71.0 83 49.5 84 34.0 85 22.0 86 15.5 87 13.5 88 9.5 89 4.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.1873280213343227E-5 2 0.008082177038830322 3 2.1873280213343227E-5 4 2.1873280213343227E-5 5 2.1873280213343227E-5 6 2.1873280213343227E-5 7 2.1873280213343227E-5 8 0.0 9 0.0 10-11 7.272865670936622E-4 12-13 0.0 14-15 7.65564807467013E-4 16-17 7.819697676270203E-4 18-19 1.0936640106671613E-5 20-21 5.085681984212184E-4 22-23 0.001148471119697543 24-25 0.0042228674068317575 26-27 0.016771621999705937 28-29 0.3218924182061161 30-31 0.30951337844196725 32-33 0.3186418098942734 34-35 0.18467616845259205 36-37 0.04574865293324171 38-39 0.035959287037982 40-41 0.031213245603034793 42-43 0.027176064508574748 44-45 0.01498358403559958 46-47 0.007691032071834702 48-49 0.005833528027331246 50-51 0.002289928224583916 52-53 0.0018396818181278687 54-55 0.0014473161376227796 56-57 5.912073352662596E-4 58-59 0.0027644090253692373 60-61 0.002557385800889933 62-63 3.847901633732146E-4 64-65 2.0682560859532133E-4 66-67 0.0077422497355787295 68-69 0.00668222606669118 70-71 0.009192949059862347 72-73 0.009565542600990684 74-75 0.007334762522704094 76-77 0.004580902437780242 78-79 3.907542952486905E-4 80-81 5.176908237326095E-4 82-83 5.993260268831478E-4 84-85 0.0 86-87 0.0020293957981360002 88-89 0.0015836093295704303 90-91 9.760919649266297E-4 92-93 0.011622852523905361 94-95 9.692413494463992E-5 96-97 2.27828006258891E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 577.0 22-23 1283.0 24-25 3193.0 26-27 4313.0 28-29 7921.0 30-31 21720.0 32-33 28455.0 34-35 39981.0 36-37 54416.0 38-39 62407.0 40-41 65904.0 42-43 77911.0 44-45 92275.0 46-47 91284.0 48-49 79951.0 50-51 70576.0 52-53 64006.0 54-55 69638.0 56-57 76638.0 58-59 78194.0 60-61 77863.0 62-63 77427.0 64-65 82233.0 66-67 89567.0 68-69 82733.0 70-71 77415.0 72-73 73590.0 74-75 74669.0 76-77 75686.0 78-79 80567.0 80-81 82743.0 82-83 80371.0 84-85 81520.0 86-87 84890.0 88-89 91706.0 90-91 100340.0 92-93 104361.0 94-95 116664.0 96-97 171297.0 98-99 754481.0 100-101 5692656.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.97123852034754 #Duplication Level Percentage of deduplicated Percentage of total 1 89.15670882678765 74.86599262583361 2 7.428406366257301 12.475449656141198 3 1.8363842291891426 4.6261037437273815 4 0.7086099040682305 2.380114050895759 5 0.3382068881702774 1.4199825637885433 6 0.1774018922147919 0.8937993963077567 7 0.10778540367584069 0.6335611688753173 8 0.06524219512446149 0.4382774342709768 9 0.03944248002776053 0.29808305084206116 >10 0.1397875887562822 1.801252720545337 >50 0.0016253279734646693 0.08344824218858288 >100 3.327124265135712E-4 0.045457934222203025 >500 6.618532826600659E-5 0.038477412361180505 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0936640106671613E-5 0.0 0.0 0.0 3 0.0 1.0936640106671613E-5 0.0 0.0 0.0 4 0.0 5.4683200533358065E-5 0.0 0.0 0.0 5 1.0936640106671613E-5 6.561984064002968E-5 0.0 3.280992032001484E-5 0.0 6 1.0936640106671613E-4 6.561984064002968E-5 0.0 3.280992032001484E-5 1.0936640106671613E-5 7 1.0936640106671613E-4 6.561984064002968E-5 0.0 3.280992032001484E-5 1.0936640106671613E-5 8 1.0936640106671613E-4 7.65564807467013E-5 0.0 4.374656042668645E-5 1.0936640106671613E-5 9 1.0936640106671613E-4 1.2030304117338774E-4 0.0 6.561984064002968E-5 1.0936640106671613E-5 10-11 1.1483472112005193E-4 1.2030304117338774E-4 0.0 8.202480080003711E-5 1.0936640106671613E-5 12-13 1.2030304117338774E-4 1.2030304117338774E-4 0.0 8.74931208533729E-5 1.0936640106671613E-5 14-15 1.2030304117338774E-4 1.9139120186675322E-4 0.0 1.0936640106671613E-4 2.7341600266679036E-5 16-17 2.0779616202676063E-4 1.9685952192008904E-4 0.0 1.2577136122672355E-4 3.280992032001484E-5 18-19 2.0779616202676063E-4 2.0779616202676066E-4 0.0 1.6404960160007421E-4 4.374656042668645E-5 20-21 2.0779616202676063E-4 2.1873280213343226E-4 0.0 2.6247936256011873E-4 4.374656042668645E-5 22-23 2.1326448208009645E-4 2.4060608234677548E-4 0.0 6.890083267203116E-4 4.921488048002226E-5 24-25 2.1873280213343226E-4 2.6247936256011873E-4 0.0 0.002012341779627577 7.108816069336548E-5 26-27 2.1873280213343226E-4 2.6247936256011873E-4 0.0 0.005621433014829209 8.202480080003711E-5 28-29 2.2966944224010388E-4 2.6247936256011873E-4 0.0 0.02556986456939823 8.74931208533729E-5 30-31 2.2966944224010388E-4 2.734160026667903E-4 0.0 0.035719066588389484 9.842976096004452E-5 32-33 2.2966944224010388E-4 2.734160026667903E-4 0.0 0.03970000358721795 1.0389808101338033E-4 34-35 2.2966944224010388E-4 3.3356752325348416E-4 0.0 0.04460508667506018 1.0936640106671613E-4 36-37 2.2966944224010388E-4 3.9371904384017807E-4 0.0 0.05212949506845024 1.0936640106671613E-4 38-39 2.2966944224010388E-4 3.9371904384017807E-4 0.0 0.0644933667090425 1.1483472112005193E-4 40-41 2.2966944224010388E-4 3.9371904384017807E-4 0.0 0.0903639888813742 1.4217632138673096E-4 42-43 2.2966944224010388E-4 3.991873638935139E-4 0.0 0.10166700643161931 1.531129614934026E-4 44-45 2.2966944224010388E-4 4.265289641601929E-4 0.0 0.11652990033658603 1.6951792165341E-4 46-47 2.2966944224010388E-4 4.53870564426872E-4 0.0 0.13356918562278042 1.9685952192008904E-4 48-49 2.2966944224010388E-4 4.5933888448020777E-4 0.0 0.1490828096140941 2.1873280213343226E-4 50-51 2.351377622934397E-4 5.085537649602301E-4 0.0 0.1642355244818876 2.1873280213343226E-4 52-53 2.4060608234677548E-4 5.140220850135658E-4 0.0 0.18403084307496323 2.4607440240011127E-4 54-55 2.4060608234677548E-4 5.140220850135658E-4 0.0 0.22399879434479464 2.734160026667903E-4 56-57 2.4060608234677548E-4 5.140220850135658E-4 0.0 0.26507134626539985 2.734160026667903E-4 58-59 2.4060608234677548E-4 5.140220850135658E-4 0.0 0.2973070929798145 2.734160026667903E-4 60-61 2.4607440240011127E-4 5.249587251202374E-4 0.0 0.31761643365790365 2.734160026667903E-4 62-63 2.6247936256011873E-4 5.35895365226909E-4 0.0 0.33573844631465855 2.734160026667903E-4 64-65 2.679476826134545E-4 6.343251261869535E-4 0.0 0.34450963168020915 2.788843227201261E-4 66-67 2.734160026667903E-4 6.452617662936252E-4 0.0 0.3503607341372785 2.9528928288013355E-4 68-69 2.734160026667903E-4 6.50730086346961E-4 0.0 0.3560532553128011 3.062259229868052E-4 70-71 2.734160026667903E-4 6.561984064002968E-4 0.0 0.3618059280089103 3.062259229868052E-4 72-73 2.8435264277346193E-4 6.561984064002968E-4 0.0 0.36590716804891216 3.280992032001484E-4 74-75 2.8435264277346193E-4 6.999449668269833E-4 0.0 0.3693904879228871 3.280992032001484E-4 76-77 2.8982096282679777E-4 7.546281673603413E-4 0.0 0.37261132843430184 3.280992032001484E-4 78-79 2.9528928288013355E-4 7.765014475736845E-4 0.0 0.37547672814224986 3.280992032001484E-4 80-81 2.9528928288013355E-4 7.765014475736845E-4 0.0 0.37664148031361033 3.3356752325348416E-4 82-83 3.0075760293346934E-4 7.874380876803561E-4 0.0 0.37708441423793054 3.4450416336015584E-4 84-85 3.062259229868052E-4 7.983747277870277E-4 0.0 0.377368766880704 3.499724834134916E-4 86-87 3.062259229868052E-4 8.20248008000371E-4 0.0 0.3774453233614507 3.499724834134916E-4 88-89 3.062259229868052E-4 9.241460890137513E-4 0.0 0.3774781332817707 3.554408034668274E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13290 0.0 51.974792 1 GTATCAA 25375 0.0 37.79552 1 ATCAACG 31410 0.0 29.8013 3 TCAACGC 31450 0.0 29.763885 4 TATCAAC 32545 0.0 29.051336 2 CAACGCA 32235 0.0 29.026213 5 AACGCAG 32805 0.0 28.573631 6 ACGCAGA 37370 0.0 25.04909 7 CGCAGAG 38145 0.0 24.540028 8 CTTATAC 10185 0.0 24.426811 1 GCAGAGT 43400 0.0 21.441837 9 TACATGG 30795 0.0 20.900139 2 GTACATG 31190 0.0 20.880465 1 TATACAC 14125 0.0 20.256575 3 ACATGGG 31060 0.0 20.118746 3 GAGTACT 25990 0.0 19.552248 12-13 AGAGTAC 40580 0.0 19.254726 10-11 CAGAGTA 42925 0.0 18.72207 10-11 CATGGGG 21330 0.0 18.27063 4 GTGGTAT 6590 0.0 18.231869 1 >>END_MODULE