##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139044_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10081346 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68274504217988 34.0 31.0 34.0 31.0 34.0 2 32.83046519780196 34.0 31.0 34.0 31.0 34.0 3 32.87565648475908 34.0 31.0 34.0 31.0 34.0 4 36.33391067026169 37.0 37.0 37.0 35.0 37.0 5 36.272645835189074 37.0 37.0 37.0 35.0 37.0 6 36.30669862932985 37.0 37.0 37.0 35.0 37.0 7 36.26203713274001 37.0 37.0 37.0 35.0 37.0 8 36.243790759686256 37.0 37.0 37.0 35.0 37.0 9 37.923767619919005 39.0 38.0 39.0 35.0 39.0 10-11 37.899942477919126 39.0 38.0 39.0 35.0 39.0 12-13 37.87099252421254 39.0 38.0 39.0 35.0 39.0 14-15 39.28910921220242 41.0 39.0 41.0 36.0 41.0 16-17 39.27582889229275 41.0 39.0 41.0 36.0 41.0 18-19 39.30900903510305 41.0 39.0 41.0 36.0 41.0 20-21 39.23213157364029 41.0 39.0 41.0 36.0 41.0 22-23 39.22736716419523 40.5 39.0 41.0 36.0 41.0 24-25 39.13371574013897 40.5 39.0 41.0 36.0 41.0 26-27 38.99121011304628 40.0 39.0 41.0 35.0 41.0 28-29 38.86084767599639 40.0 39.0 41.0 35.0 41.0 30-31 38.74189333830505 40.0 38.0 41.0 35.0 41.0 32-33 38.64548538112969 40.0 38.0 41.0 35.0 41.0 34-35 38.50234716526553 40.0 38.0 41.0 34.5 41.0 36-37 38.63863958522387 40.0 38.0 41.0 35.0 41.0 38-39 38.69460049284288 40.0 38.0 41.0 35.0 41.0 40-41 38.68005891902838 40.0 38.0 41.0 35.0 41.0 42-43 38.64918118928789 40.0 38.0 41.0 35.0 41.0 44-45 38.5799493388227 40.0 38.0 41.0 34.5 41.0 46-47 38.514485209336215 40.0 38.0 41.0 34.0 41.0 48-49 38.43104384393932 40.0 38.0 41.0 34.0 41.0 50-51 38.334111139731874 40.0 38.0 41.0 34.0 41.0 52-53 38.22755177499651 40.0 37.5 41.0 34.0 41.0 54-55 38.093211178581 40.0 37.0 41.0 33.5 41.0 56-57 37.94227832979668 40.0 37.0 41.0 33.0 41.0 58-59 37.75811288834646 39.5 36.5 41.0 33.0 41.0 60-61 37.53221467842359 39.0 36.0 41.0 33.0 41.0 62-63 37.3384937732771 39.0 35.5 40.5 33.0 41.0 64-65 37.10754470914932 38.5 35.0 40.0 32.0 41.0 66-67 36.832667491703184 38.0 35.0 40.0 32.0 41.0 68-69 36.4825693500743 37.5 35.0 40.0 31.5 41.0 70-71 36.208638649464405 37.0 35.0 39.5 31.0 41.0 72-73 35.88350939165319 36.5 35.0 39.0 31.0 40.5 74-75 35.55669189412524 36.0 34.0 39.0 31.0 40.0 76-77 34.52831196730579 35.0 33.5 37.0 29.5 39.0 78-79 34.81422001617642 35.0 34.0 37.0 30.5 39.0 80-81 34.648217976402414 35.0 34.0 37.0 31.0 39.0 82-83 34.37152550570329 35.0 34.0 36.0 30.0 38.5 84-85 34.105449938451166 35.0 34.0 36.0 30.0 37.0 86-87 33.879151394355496 35.0 34.0 35.5 30.0 37.0 88-89 33.69454329006637 35.0 33.5 35.0 30.0 36.5 90-91 33.50665451630333 35.0 33.0 35.0 30.0 36.0 92-93 33.36427297565142 35.0 33.0 35.0 30.0 36.0 94-95 33.27155715832799 34.0 33.0 35.0 29.5 35.5 96-97 33.2513839009836 34.0 33.0 35.0 30.0 35.0 98-99 33.25918808341291 34.0 33.0 35.0 30.0 35.0 100-101 32.25725677528155 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 4.0 19 12.0 20 45.0 21 253.0 22 1243.0 23 4088.0 24 10468.0 25 21716.0 26 38422.0 27 59607.0 28 85567.0 29 115392.0 30 147524.0 31 186635.0 32 235882.0 33 310258.0 34 435964.0 35 632891.0 36 1089049.0 37 2243707.0 38 3002969.0 39 1395804.0 40 63843.0 41 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.8381510602008 21.502934380283584 15.296788275770743 24.362126283744878 2 13.481678002542127 22.093345659401145 41.795359431887185 22.629616906169545 3 16.330231729992377 27.716212469665507 31.79869352750055 24.15486227284157 4 11.657993877797992 19.310795985454316 39.7240247824198 29.307185354327896 5 12.554981502964138 38.35245197937379 36.10980479291206 12.982761724750022 6 28.404007600176367 39.22748403114863 19.308584320842108 13.059924047832903 7 25.03257253868407 33.518394618971975 24.124122326931573 17.324910515412377 8 23.876454592472076 36.90546877371335 21.787467665527995 17.430608968286577 9 25.44984568528845 16.817734457283777 21.666422320987692 36.06599753644007 10-11 23.451851558679103 27.145188409424144 29.68974712676515 19.71321290513161 12-13 24.57744233756088 24.91474848695799 29.587720726974354 20.920088448506778 14-15 21.763532099273707 26.13121677660063 27.374045129886536 24.731205994239126 16-17 21.06364914882714 29.242145778119532 27.96202877694131 21.732176296112016 18-19 21.095640403573093 28.33454977142933 29.89530366282439 20.674506162173188 20-21 21.978990453168358 27.474036896282545 29.69125993943947 20.855712711109632 22-23 21.649246697722397 27.494038844349046 29.594400345514142 21.26231411241442 24-25 21.498678670838277 27.75084973068066 29.553643741118226 21.196827857362837 26-27 21.445797810635668 27.92345292114072 29.462361491700364 21.168387776523254 28-29 21.28921555805498 27.955966922878588 29.5375455719679 21.217271947098528 30-31 21.71020713270957 27.69525575851757 29.502042657518206 21.092494451254662 32-33 21.46596502600551 27.869560280195575 29.398564360443263 21.26591033335565 34-35 21.531969375962877 27.82297087347803 29.470503069602966 21.174556680956126 36-37 21.42304977362148 27.99063275164554 29.3725908724362 21.21372660229678 38-39 21.36827772928847 27.882003249427136 29.430312651806506 21.319406369477896 40-41 21.53094540483712 27.741129272446337 29.364591420869214 21.36333390184733 42-43 21.587915438354884 27.84035434269505 29.062936979712163 21.5087932392379 44-45 21.60002021155765 28.015595204745825 28.859696947780407 21.524687635916123 46-47 21.72858194903977 27.945486495932663 28.496468832796683 21.82946272223088 48-49 21.716563930604533 28.12832617660445 28.374597726422408 21.78051216636861 50-51 21.6721451910591 28.18569164883392 28.35056751900546 21.79159564110152 52-53 21.75351529300384 28.162736280405802 28.266140224419317 21.817608202171037 54-55 21.7201539656868 28.124548083532574 28.22750166993895 21.92779628084168 56-57 21.86335496812486 28.190813599469184 28.06845231046567 21.87737912194029 58-59 21.629084888655882 28.397205829936485 28.27741246328023 21.69629681812741 60-61 21.919903860999774 28.421108664159515 28.012317252012046 21.646670222828664 62-63 21.767539715611303 28.56932849679391 27.958221250291814 21.704910537302972 64-65 21.725553446663916 28.460150617881247 27.972895262498266 21.841400672956578 66-67 21.848165536660378 28.42687589965045 27.850909885560526 21.874048678128645 68-69 21.786488332888528 28.308635952123634 27.948790316741505 21.956085398246326 70-71 21.792609730490355 28.09682867802022 28.025200785977916 22.085360805511513 72-73 21.836258879803427 28.13904238825503 27.95987998615682 22.06481874578472 74-75 21.72622521826527 28.22178547506427 27.95036086112099 22.10162844554947 76-77 21.8793271306521 28.129814587728546 27.893259716887357 22.09759856473199 78-79 21.833360296056227 28.110104004428237 27.891469397944412 22.165066301571123 80-81 21.840834767526925 28.172129102859746 27.861077062855273 22.125959066758057 82-83 21.87695799798199 28.135795453651074 27.98856565383084 21.9986808945361 84-85 22.01693661501629 28.0969015829753 27.889851767170782 21.99631003483763 86-87 21.87168922515803 28.095224413595982 27.94776428977958 22.08532207146641 88-89 21.857315346561613 28.055760196622977 27.97214097666411 22.114783480151303 90-91 21.985207209844717 28.04111360630116 27.951723784321004 22.02195539953312 92-93 22.062248640832628 27.945933321695264 27.977797426484308 22.0140206109878 94-95 21.880688191951823 27.98692707638396 28.057669995777523 22.074714735886694 96-97 21.813692778526903 28.021948220178423 28.102845224413777 22.061513776880897 98-99 22.036945179072283 28.620442310050837 28.115129152365835 21.227483358511044 100-101 22.53055816039467 31.282097280547966 25.38150609532352 20.805838463733846 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2949.0 1 2690.0 2 3699.0 3 5263.5 4 7038.5 5 10556.0 6 13399.5 7 16008.0 8 18229.0 9 18587.0 10 17039.5 11 15387.0 12 16757.5 13 21952.5 14 34591.5 15 51922.0 16 65471.5 17 72378.5 18 72668.0 19 68404.5 20 62385.5 21 56833.0 22 54631.0 23 58192.5 24 67215.5 25 82683.5 26 102899.0 27 123925.5 28 147716.0 29 173681.5 30 199085.5 31 224793.0 32 249061.5 33 271359.5 34 292713.0 35 312055.0 36 333350.5 37 353526.0 38 364990.0 39 372564.0 40 382586.0 41 391604.5 42 394822.5 43 398273.0 44 404711.5 45 412156.5 46 417170.5 47 415863.5 48 406648.5 49 394343.5 50 383375.5 51 369760.0 52 350969.0 53 329229.5 54 308076.0 55 283722.5 56 258466.0 57 233089.5 58 204574.0 59 174183.5 60 144311.0 61 117374.5 62 92557.5 63 70371.0 64 52600.5 65 40115.5 66 31051.5 67 23807.5 68 18217.0 69 13142.0 70 9091.5 71 6675.0 72 4811.5 73 3404.0 74 2408.0 75 1632.0 76 1073.5 77 695.0 78 422.5 79 259.5 80 175.0 81 115.5 82 78.0 83 53.5 84 35.0 85 24.5 86 19.5 87 15.5 88 8.0 89 3.5 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.919310377800742E-6 2 0.008064399337152002 3 9.919310377800742E-6 4 5.951586226680445E-5 5 9.919310377800742E-6 6 9.919310377800742E-6 7 9.919310377800742E-6 8 0.0 9 0.0 10-11 6.893920712571516E-4 12-13 0.0 14-15 6.596341401237493E-4 16-17 7.935448302240593E-4 18-19 0.0 20-21 5.9021641400775E-4 22-23 0.0012598984492088556 24-25 0.004698522084095706 26-27 0.0179632164551203 28-29 0.32377073420660457 30-31 0.3112611860731801 32-33 0.3202765010263272 34-35 0.18509893329207466 36-37 0.04563934518465976 38-39 0.03489304520901253 40-41 0.03258813900655697 42-43 0.02873407010436165 44-45 0.015508308358797034 46-47 0.00830923106909403 48-49 0.0062326612808155935 50-51 0.0026352984355449477 52-53 0.001995635314267647 54-55 0.0016320916279013275 56-57 6.125957898807379E-4 58-59 0.00283216225540373 60-61 0.0026363954220804974 62-63 4.671277423845655E-4 64-65 2.0466661485569215E-4 66-67 0.008071301092011396 68-69 0.007199302214320436 70-71 0.009620029418708547 72-73 0.010199446733508309 74-75 0.007851700304624346 76-77 0.004877369981190845 78-79 4.730998497508607E-4 80-81 5.783799341716567E-4 82-83 6.611224726232332E-4 84-85 0.0 86-87 0.00215642625677523 88-89 0.0016427739055509722 90-91 0.0011157829355877107 92-93 0.012799337160314901 94-95 1.1668072440610026E-4 96-97 5.598889796142323E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 185.0 20-21 691.0 22-23 1503.0 24-25 4444.0 26-27 4958.0 28-29 8502.0 30-31 22803.0 32-33 29620.0 34-35 42223.0 36-37 57631.0 38-39 67095.0 40-41 72157.0 42-43 85355.0 44-45 102289.0 46-47 100985.0 48-49 87978.0 50-51 79692.0 52-53 72787.0 54-55 78122.0 56-57 83976.0 58-59 86337.0 60-61 86770.0 62-63 87429.0 64-65 94318.0 66-67 101021.0 68-69 96068.0 70-71 92046.0 72-73 88768.0 74-75 90988.0 76-77 92569.0 78-79 97426.0 80-81 99204.0 82-83 96911.0 84-85 98902.0 86-87 103359.0 88-89 109109.0 90-91 117123.0 92-93 121769.0 94-95 134464.0 96-97 194762.0 98-99 827687.0 100-101 6161320.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.01081836900325 #Duplication Level Percentage of deduplicated Percentage of total 1 88.81100140959659 73.72273907181314 2 7.488998880605995 12.433358516873056 3 1.973380586053795 4.914358122054862 4 0.7542618320037756 2.504475677565482 5 0.3667393479505689 1.5221666700745677 6 0.19576651044944893 0.9750442944991669 7 0.10865458778320818 0.6313654376001571 8 0.07701201616452846 0.5114264388851532 9 0.051684088363110496 0.3861304624509912 >10 0.1696075617032079 2.1822178012767908 >50 0.0022398352070791883 0.12135892699550123 >100 6.109981630697503E-4 0.07382815054137865 >500 4.23459555405325E-5 0.021530429369705464 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.9838620755601485E-5 2 0.0 1.9838620755601485E-5 0.0 0.0 1.9838620755601485E-5 3 0.0 1.9838620755601485E-5 0.0 0.0 1.9838620755601485E-5 4 0.0 2.9757931133402227E-5 0.0 0.0 1.9838620755601485E-5 5 0.0 2.9757931133402227E-5 0.0 0.0 1.9838620755601485E-5 6 9.919310377800742E-5 2.9757931133402227E-5 0.0 0.0 2.9757931133402227E-5 7 9.919310377800742E-5 2.9757931133402227E-5 0.0 9.919310377800742E-6 2.9757931133402227E-5 8 9.919310377800742E-5 3.967724151120297E-5 0.0 1.9838620755601485E-5 3.967724151120297E-5 9 9.919310377800742E-5 6.94351726446052E-5 0.0 4.959655188900371E-5 3.967724151120297E-5 10-11 9.919310377800742E-5 6.94351726446052E-5 0.0 4.959655188900371E-5 3.967724151120297E-5 12-13 9.919310377800742E-5 6.94351726446052E-5 0.0 4.959655188900371E-5 3.967724151120297E-5 14-15 1.0911241415580817E-4 1.4383000047811078E-4 0.0 5.9515862266804455E-5 6.447551745570483E-5 16-17 1.388703452892104E-4 1.4878965566701114E-4 0.0 8.927379340020668E-5 8.927379340020668E-5 18-19 1.388703452892104E-4 1.7358793161151298E-4 0.0 1.1407206934470854E-4 9.919310377800742E-5 20-21 1.388703452892104E-4 2.083055179338156E-4 0.0 1.6862827642261262E-4 9.919310377800742E-5 22-23 1.388703452892104E-4 2.2814413868941708E-4 0.0 4.265303462454319E-4 1.4878965566701114E-4 24-25 1.388703452892104E-4 2.6782138020062E-4 0.0 0.0012895103491140964 1.9838620755601485E-4 26-27 1.388703452892104E-4 2.975793113340223E-4 0.0 0.0038139748402643853 1.9838620755601485E-4 28-29 1.388703452892104E-4 2.975793113340223E-4 0.0 0.020111401790991003 1.9838620755601485E-4 30-31 1.4383000047811078E-4 3.07498621711823E-4 0.0 0.028547775267310536 1.9838620755601485E-4 32-33 1.4878965566701114E-4 3.124582769007234E-4 0.0 0.03141941562168385 2.083055179338156E-4 34-35 1.5870896604481188E-4 3.7197413916752783E-4 0.0 0.03553096977328225 2.1822482831161633E-4 36-37 1.5870896604481188E-4 4.265303462454319E-4 0.0 0.0413883225513736 2.2318448350051672E-4 38-39 1.5870896604481188E-4 4.463689670010334E-4 0.0 0.051649849137208464 2.3310379387831743E-4 40-41 1.5870896604481188E-4 5.058848292678378E-4 0.0 0.07769299853412431 2.3806344906721782E-4 42-43 1.6862827642261262E-4 5.207637948345389E-4 0.0 0.08797436374071478 2.479827594450186E-4 44-45 1.6862827642261262E-4 5.802796571013433E-4 0.0 0.10188123689039141 2.628617250117197E-4 46-47 1.6862827642261262E-4 6.249165538014467E-4 0.0 0.11799515659912874 2.827003457673211E-4 48-49 1.6862827642261262E-4 6.249165538014467E-4 0.0 0.1322789635431618 3.07498621711823E-4 50-51 1.7854758680041336E-4 6.993113816349524E-4 0.0 0.14544684806969227 3.07498621711823E-4 52-53 1.884668971782141E-4 7.042710368238527E-4 0.0 0.1666394546918636 3.223775872785241E-4 54-55 1.884668971782141E-4 7.141903472016535E-4 0.0 0.21504072968034227 3.3725655284522524E-4 56-57 1.884668971782141E-4 7.340289679572549E-4 0.0 0.26380405949761077 3.4221620803412563E-4 58-59 1.884668971782141E-4 7.340289679572549E-4 0.0 0.29877954788973615 3.4717586322302596E-4 60-61 1.9342655236711446E-4 7.389886231461552E-4 0.0 0.3186925634731711 3.4717586322302596E-4 62-63 2.4798275944501854E-4 7.637868990906572E-4 0.0 0.3309577907553217 3.6701448397862745E-4 64-65 2.4798275944501854E-4 8.332220717352624E-4 0.0 0.3399694842335538 3.6701448397862745E-4 66-67 2.727810353895204E-4 8.530606924908638E-4 0.0 0.34606986011590124 3.7197413916752783E-4 68-69 2.777406905784208E-4 8.530606924908638E-4 0.0 0.3515254808236916 3.769337943564282E-4 70-71 2.926196561451219E-4 8.629800028686646E-4 0.0 0.3567033608409036 3.8685310473422893E-4 72-73 3.3725655284522524E-4 8.877782788131664E-4 0.0 0.3609339467170356 4.7612689813443564E-4 74-75 3.3725655284522524E-4 9.07616899568768E-4 0.0 0.36421723845208764 4.7612689813443564E-4 76-77 3.3725655284522524E-4 9.224958651354691E-4 0.0 0.36755508639421763 4.7612689813443564E-4 78-79 3.3725655284522524E-4 9.324151755132697E-4 0.0 0.37075406399105837 4.7612689813443564E-4 80-81 3.3725655284522524E-4 9.324151755132697E-4 0.0 0.37216756571989495 4.8108655332333597E-4 82-83 3.4221620803412563E-4 9.324151755132697E-4 0.0 0.3726486522732183 5.455620707790408E-4 84-85 3.5709517360082673E-4 9.324151755132697E-4 0.0 0.3729015946878522 5.505217259679411E-4 86-87 3.6205482878972706E-4 9.373748307021702E-4 0.0 0.3729561508949301 5.554813811568416E-4 88-89 3.769337943564282E-4 9.720924170244727E-4 0.0 0.37298590882606353 5.654006915346423E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13365 0.0 51.502567 1 GTATCAA 25660 0.0 38.007713 1 ATCAACG 31915 0.0 29.864761 3 TCAACGC 31950 0.0 29.805515 4 CAACGCA 32610 0.0 29.18928 5 TATCAAC 32985 0.0 29.181826 2 AACGCAG 33530 0.0 28.489494 6 ACGCAGA 38140 0.0 24.968176 7 CGCAGAG 38525 0.0 24.740656 8 GCAGAGT 44650 0.0 21.233303 9 GTACATG 30045 0.0 20.850382 1 TACATGG 29825 0.0 20.60627 2 CTTATAC 10545 0.0 20.539322 1 ACATGGG 30375 0.0 19.756563 3 GAGTACT 27360 0.0 19.603136 12-13 AGAGTAC 40685 0.0 19.448603 10-11 CAGAGTA 43870 0.0 18.389235 10-11 TATACAC 14020 0.0 18.348692 3 CATGGGG 22900 0.0 17.895977 4 TATGCCG 6370 0.0 17.766207 42-43 >>END_MODULE