##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139043_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12548199 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64625234266686 34.0 31.0 34.0 31.0 34.0 2 32.76244614864651 34.0 31.0 34.0 31.0 34.0 3 32.82914647751442 34.0 31.0 34.0 31.0 34.0 4 36.295850185353295 37.0 37.0 37.0 35.0 37.0 5 36.23726169787393 37.0 37.0 37.0 35.0 37.0 6 36.27547881572487 37.0 37.0 37.0 35.0 37.0 7 36.22551857840316 37.0 37.0 37.0 35.0 37.0 8 36.20458433915496 37.0 37.0 37.0 35.0 37.0 9 37.9324018530468 39.0 38.0 39.0 35.0 39.0 10-11 37.88822049283726 39.0 38.0 39.0 35.0 39.0 12-13 37.862496801333805 39.0 38.0 39.0 35.0 39.0 14-15 39.25610806777929 41.0 39.0 41.0 36.0 41.0 16-17 39.23057225184267 41.0 39.0 41.0 36.0 41.0 18-19 39.24556531977218 41.0 39.0 41.0 36.0 41.0 20-21 39.24155511409502 40.5 39.0 41.0 36.0 41.0 22-23 39.10868937621062 40.0 39.0 41.0 35.5 41.0 24-25 39.057229247660565 40.0 39.0 41.0 35.0 41.0 26-27 39.00544411201564 40.0 38.5 41.0 35.0 41.0 28-29 38.81826258280013 40.0 38.5 41.0 35.0 41.0 30-31 38.71024871239225 40.0 38.0 41.0 35.0 41.0 32-33 38.59463489027754 40.0 38.0 41.0 35.0 41.0 34-35 38.315522600505446 40.0 38.0 41.0 34.0 41.0 36-37 38.56185300718117 40.0 38.0 41.0 34.5 41.0 38-39 38.660714611723364 40.0 38.0 41.0 35.0 41.0 40-41 38.651987764612414 40.0 38.0 41.0 35.0 41.0 42-43 38.59594969327415 40.0 38.0 41.0 34.5 41.0 44-45 38.54503644868272 40.0 38.0 41.0 34.0 41.0 46-47 38.47333592277519 40.0 38.0 41.0 34.0 41.0 48-49 38.411424269358335 40.0 38.0 41.0 34.0 41.0 50-51 38.340211959194335 40.0 38.0 41.0 34.0 41.0 52-53 38.230183725061664 40.0 37.5 41.0 34.0 41.0 54-55 38.089832115063174 40.0 37.0 41.0 33.0 41.0 56-57 37.949442914336366 40.0 37.0 41.0 33.0 41.0 58-59 37.782332658905986 40.0 36.5 41.0 33.0 41.0 60-61 37.58885723193224 39.0 36.0 41.0 33.0 41.0 62-63 37.35875204407343 39.0 35.5 40.5 32.5 41.0 64-65 37.0782420171097 38.5 35.0 40.0 32.0 41.0 66-67 36.79660150557751 38.0 35.0 40.0 32.0 41.0 68-69 36.51125949906438 37.5 35.0 40.0 31.5 41.0 70-71 36.20645337666467 37.0 35.0 39.5 31.0 41.0 72-73 35.90239159820694 36.5 35.0 39.0 31.0 40.5 74-75 35.586844708998385 36.0 34.0 39.0 31.0 40.0 76-77 34.539622832740065 35.0 33.5 37.0 29.5 39.0 78-79 34.821506415400414 35.0 34.0 37.0 30.5 39.0 80-81 34.622181846789076 35.0 34.0 37.0 30.0 39.0 82-83 34.38359659962987 35.0 34.0 36.5 30.0 38.5 84-85 34.13020953535933 35.0 34.0 36.0 30.0 37.0 86-87 33.88698032201012 35.0 34.0 35.5 30.0 37.0 88-89 33.69235470273283 35.0 33.5 35.0 30.0 36.5 90-91 33.525343535138454 35.0 33.0 35.0 30.0 36.0 92-93 33.39775724806305 35.0 33.0 35.0 30.0 36.0 94-95 33.323594129804036 35.0 33.0 35.0 30.0 36.0 96-97 33.277843268138966 34.0 33.0 35.0 30.0 35.0 98-99 33.29260078858859 34.0 33.0 35.0 30.0 35.0 100-101 32.24827169144528 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 18.0 20 62.0 21 379.0 22 1655.0 23 5626.0 24 14080.0 25 28459.0 26 49287.0 27 77309.0 28 109754.0 29 146238.0 30 187630.0 31 236506.0 32 299541.0 33 390326.0 34 548768.0 35 798366.0 36 1369583.0 37 2800504.0 38 3728256.0 39 1680886.0 40 74963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.743876909168705 21.601788687251243 15.420932584976152 24.2334018186039 2 13.51076299354893 22.26134754904289 41.53321374982906 22.694675707579123 3 16.45464153498375 27.496721043133043 31.820425530422774 24.22821189146043 4 11.725246264463333 19.358159582607765 39.75086620014015 29.165727952788757 5 12.5254319385142 38.39341712650693 36.194304552733385 12.886846382245482 6 28.513474884080956 39.340353040361094 19.276020291998922 12.870151783559026 7 25.185363283665374 33.43511422397975 24.176254166235996 17.203268326118884 8 23.91663848862971 36.970434538402316 21.75823937621596 17.354687596752008 9 25.436943216866677 16.725477235854903 21.769819060872326 36.0677604864061 10-11 23.404958225874346 27.240823742181945 29.725375707332642 19.62884232461107 12-13 24.485884388668048 25.006365455313546 29.632284282389847 20.875465873628556 14-15 21.672083284554418 26.200126664463415 27.48453094102675 24.643259109955416 16-17 21.003669277381917 29.277361196512054 28.072651716070464 21.64631781003557 18-19 21.051860656425216 28.419957695102305 29.943838524950905 20.584343123521577 20-21 21.980685943903573 27.54609780539695 29.7671636500234 20.706052600676077 22-23 21.712299618380314 27.514492211010687 29.542770109973947 21.230438060635056 24-25 21.44993874247784 27.691202295717076 29.620378754252997 21.238480207552087 26-27 21.3693534639282 27.83907689728469 29.543578621354833 21.247991017432277 28-29 21.278767086319558 27.906221857131808 29.588083303610567 21.226927752938067 30-31 21.610755009729342 27.74875137444982 29.476751361626963 21.163742254193878 32-33 21.39966097787923 27.860835475480332 29.43309573941319 21.306407807227252 34-35 21.523034865859206 27.91342112596023 29.375800793730978 21.187743214449583 36-37 21.484401702878245 27.886673960214686 29.360594699886445 21.268329637020628 38-39 21.401942335308565 27.92552678111882 29.403053311785353 21.269477571787267 40-41 21.58313138891142 27.90715920379417 29.18530460410434 21.324404803190074 42-43 21.533705209144703 27.986468974860884 29.0015136519406 21.47831216405382 44-45 21.656407736925402 28.12133859458652 28.75705608404211 21.46519758444597 46-47 21.686994511322848 28.05365653347517 28.485483324797922 21.773865630404064 48-49 21.663734589688165 28.247043477305215 28.404086422017883 21.685135510988736 50-51 21.661536355104747 28.31790886534207 28.282869402893457 21.73768537665973 52-53 21.760008220005776 28.229882152282393 28.15600691226196 21.85410271544987 54-55 21.831106473659275 28.136385973700733 28.174657645099572 21.85784990754042 56-57 21.82126903344049 28.253618243050926 28.118788429212383 21.8063242942962 58-59 21.752453522298172 28.307654150214063 28.19726208858842 21.74263023889935 60-61 21.841691305055875 28.270786657951707 28.148755079102433 21.738766957889986 62-63 21.81471186530805 28.38586411447908 28.044381623379262 21.75504239683361 64-65 21.779060663780157 28.33062735386458 28.047627346052135 21.84268463630313 66-67 21.877220328656524 28.318132110182116 27.903959584203985 21.90068797695738 68-69 21.78726123999495 28.297024410379407 27.993244062926344 21.922470286699298 70-71 21.805759276196216 28.125570400337068 28.052838465696933 22.015831857769776 72-73 21.86844110712654 28.126907646085364 27.981331616683086 22.023319630105014 74-75 21.740836217404706 28.229528779213663 27.959882083381128 22.069752920000504 76-77 21.92138651032228 28.13431655493563 27.889853994684273 22.054442940057818 78-79 21.86599443390575 28.168831881828282 27.84516970966323 22.120003974602735 80-81 21.87931708089364 28.13952019743196 27.853194549014148 22.127968172660253 82-83 21.863872726448836 28.11774826713645 27.98249189713878 22.035887109275937 84-85 22.002696372031984 28.09428947892643 27.90201174325765 22.001002405783936 86-87 21.86174859428498 28.128822643196088 27.939758908628626 22.069669853890307 88-89 21.95506231258694 28.059083236452132 27.926932671723048 22.05892177923788 90-91 21.9583360326031 28.14070690698821 27.929037099757114 21.971919960651576 92-93 22.033602788571567 27.982120462668682 27.955765500940977 22.028511247818773 94-95 21.813042872409678 28.03616470778457 28.053045946435745 22.09774647337001 96-97 21.800222987398435 28.053762355292704 28.125692709280386 22.020321948028474 98-99 22.050605159976318 28.618288395446918 28.171071753640557 21.160034690936204 100-101 22.548914387512866 31.349286207103383 25.34982058550038 20.75197881988337 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3565.0 1 3155.0 2 4108.0 3 5763.0 4 7602.5 5 11314.5 6 14468.0 7 17814.0 8 20690.5 9 21081.0 10 19320.0 11 17273.0 12 18649.5 13 25050.0 14 40682.0 15 62068.5 16 78673.0 17 86748.5 18 87049.5 19 81947.0 20 74661.5 21 68186.0 22 65502.0 23 70511.5 24 83316.5 25 102987.5 26 128773.5 27 157510.5 28 187068.0 29 217891.0 30 246698.5 31 274505.5 32 304403.5 33 334220.5 34 364625.5 35 392205.5 36 419815.0 37 443224.0 38 456976.5 39 465194.5 40 475539.0 41 489504.5 42 496403.5 43 499924.5 44 504695.0 45 507336.0 46 506326.0 47 501208.5 48 492512.0 49 481792.0 50 469524.5 51 450662.0 52 425783.5 53 400003.5 54 372496.5 55 342525.5 56 312983.0 57 281524.5 58 247794.5 59 215061.5 60 181913.0 61 148797.5 62 117089.0 63 88640.0 64 65433.5 65 49171.5 66 37959.0 67 29142.5 68 22149.0 69 16117.5 70 11301.5 71 8116.0 72 5693.5 73 3975.5 74 2791.5 75 1857.5 76 1245.5 77 788.5 78 474.5 79 292.0 80 187.5 81 114.5 82 75.5 83 49.5 84 35.0 85 27.5 86 24.0 87 21.0 88 15.0 89 10.0 90 6.0 91 4.5 92 5.0 93 3.0 94 1.0 95 2.0 96 3.0 97 2.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.593854225614369E-5 2 0.0016177620389985845 3 7.969271128071845E-6 4 1.593854225614369E-5 5 7.969271128071845E-6 6 1.593854225614369E-5 7 1.593854225614369E-5 8 7.969271128071846E-5 9 7.969271128071845E-6 10-11 7.969271128071845E-6 12-13 0.0 14-15 6.853573170141787E-4 16-17 0.0028729222416699 18-19 5.1800262332466987E-5 20-21 0.0 22-23 0.0011317630864390831 24-25 0.005432859384445472 26-27 0.009872958628236136 28-29 0.3622470158335709 30-31 0.3317370983296045 32-33 0.3349208509892991 34-35 0.18939774855980593 36-37 0.04784075847999414 38-39 0.03813319621002972 40-41 0.024070049104776503 42-43 0.031306990656705724 44-45 0.020090624130903345 46-47 0.015149595241243803 48-49 0.009970321914602735 50-51 0.005592360562673313 52-53 0.004149349967387226 54-55 7.399827432562365E-4 56-57 0.0031624615379246745 58-59 0.005995670624337144 60-61 0.004539203610703522 62-63 0.00397899983251499 64-65 5.599636890642658E-4 66-67 9.1207255719607E-5 68-69 7.09536067998988E-4 70-71 9.403297904158515E-4 72-73 0.0017259637097083295 74-75 0.0020906090885048903 76-77 0.0010611366944285954 78-79 1.3591686043314084E-4 80-81 0.0032016455279493834 82-83 0.001545223755604231 84-85 5.529263627749866E-5 86-87 1.526512856927328E-5 88-89 0.0016135150910829268 90-91 0.003764457280546649 92-93 0.015420901973599415 94-95 0.0015812419160356225 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 232.0 20-21 823.0 22-23 1741.0 24-25 4773.0 26-27 6020.0 28-29 9652.0 30-31 25167.0 32-33 33720.0 34-35 47393.0 36-37 64783.0 38-39 75995.0 40-41 83054.0 42-43 100221.0 44-45 119891.0 46-47 118100.0 48-49 102925.0 50-51 92373.0 52-53 84706.0 54-55 90165.0 56-57 95469.0 58-59 98104.0 60-61 98065.0 62-63 96908.0 64-65 105768.0 66-67 112090.0 68-69 111335.0 70-71 110146.0 72-73 108279.0 74-75 109691.0 76-77 111066.0 78-79 117267.0 80-81 119888.0 82-83 116182.0 84-85 119206.0 86-87 124935.0 88-89 133772.0 90-91 143509.0 92-93 148634.0 94-95 167883.0 96-97 247215.0 98-99 1054937.0 100-101 7836116.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.7468872022936 #Duplication Level Percentage of deduplicated Percentage of total 1 88.51547206597081 73.24379782700656 2 7.6507036883990605 12.661438302442573 3 2.0463357545199226 5.079837415718412 4 0.7866390693090286 2.6036773734812564 5 0.3824460497399619 1.5823110069397697 6 0.20513719248191967 1.018467847637796 7 0.12878319155868906 0.7459485757820749 8 0.06871919472668248 0.45490395637449954 9 0.053189976843670224 0.396117451275821 >10 0.1596530200195093 1.9749190490426691 >50 0.0024792547518331055 0.13567085340710092 >100 3.732343271009793E-4 0.0549799634234625 >500 5.1231248104749464E-5 0.029773399007404326 >1k 1.7076103772661336E-5 0.01815697846059422 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.969271128071845E-6 2 0.0 4.781562676843107E-5 0.0 0.0 7.969271128071845E-6 3 0.0 4.781562676843107E-5 0.0 0.0 7.969271128071845E-6 4 0.0 1.1156979579300583E-4 0.0 7.969271128071845E-6 7.969271128071845E-6 5 0.0 1.1953906692107768E-4 0.0 7.969271128071845E-6 7.969271128071845E-6 6 0.0 1.1953906692107768E-4 0.0 7.969271128071845E-6 1.593854225614369E-5 7 0.0 1.1953906692107768E-4 0.0 7.969271128071845E-6 1.593854225614369E-5 8 0.0 1.1953906692107768E-4 0.0 7.969271128071845E-6 1.593854225614369E-5 9 0.0 2.789244894825146E-4 0.0 7.969271128071845E-6 1.593854225614369E-5 10-11 0.0 2.9087839617462235E-4 0.0 7.969271128071845E-6 1.593854225614369E-5 12-13 0.0 2.948630317386583E-4 0.0 7.969271128071845E-6 1.593854225614369E-5 14-15 0.0 3.8252501414744855E-4 0.0 1.1953906692107767E-5 1.593854225614369E-5 16-17 0.0 3.9846355640359225E-4 0.0 3.187708451228738E-5 1.593854225614369E-5 18-19 0.0 4.422945476079874E-4 0.0 3.5861720076323304E-5 1.593854225614369E-5 20-21 3.9846355640359224E-6 4.861255388123826E-4 0.0 7.969271128071846E-5 1.593854225614369E-5 22-23 7.969271128071845E-6 5.060487166325621E-4 0.0 2.7095521835444273E-4 1.9923177820179614E-5 24-25 1.9923177820179614E-5 5.698028856571369E-4 0.0 0.001075851602289699 2.3907813384215535E-5 26-27 3.187708451228738E-5 6.136338768615321E-4 0.0 0.0034666329407112527 2.3907813384215535E-5 28-29 3.187708451228738E-5 6.136338768615321E-4 0.0 0.017731628259959855 2.3907813384215535E-5 30-31 3.187708451228738E-5 6.813726814501428E-4 0.0 0.02460910924348586 2.3907813384215535E-5 32-33 3.187708451228738E-5 7.092651303983943E-4 0.0 0.02715927600446885 2.3907813384215535E-5 34-35 3.187708451228738E-5 8.606812818317592E-4 0.0 0.030526293056079203 2.3907813384215535E-5 36-37 3.187708451228738E-5 9.881896198809088E-4 0.0 0.03580195054286277 2.3907813384215535E-5 38-39 3.187708451228738E-5 0.0010041281621370524 0.0 0.04528538318526826 2.3907813384215535E-5 40-41 3.187708451228738E-5 0.0011077286868019865 0.0 0.06938445907655752 2.3907813384215535E-5 42-43 3.5861720076323304E-5 0.001135621135750238 0.0 0.07916673938626571 2.3907813384215535E-5 44-45 3.984635564035923E-5 0.0012750833804914953 0.0 0.0928977935399335 2.7892448948251455E-5 46-47 3.984635564035923E-5 0.001394622447412573 0.0 0.10948184675745101 3.187708451228738E-5 48-49 3.984635564035923E-5 0.0014264995319248602 0.0 0.12326071653788723 3.187708451228738E-5 50-51 5.578489789650292E-5 0.0016018234967424408 0.0 0.13657736859289527 3.187708451228738E-5 52-53 5.9769533460538835E-5 0.0016097927678705127 0.0 0.157508659210776 3.187708451228738E-5 54-55 6.773880458861068E-5 0.0016257313101266564 0.0 0.20445563542624723 3.5861720076323304E-5 56-57 7.570807571668253E-5 0.0016615930302029797 0.0 0.2521636770344493 3.984635564035923E-5 58-59 9.563125353686214E-5 0.0016894854791512312 0.0 0.2857581394748362 3.984635564035923E-5 60-61 9.563125353686214E-5 0.0017572242837398419 0.0 0.30570522510840004 4.781562676843107E-5 62-63 9.563125353686214E-5 0.0017930860038161652 0.0 0.3177109320628403 4.781562676843107E-5 64-65 1.2750833804914952E-4 0.002000287053146033 0.0 0.32645322249033504 5.180026233246699E-5 66-67 1.3547760917722137E-4 0.0020241948665302486 0.0 0.3322229747870591 5.9769533460538835E-5 68-69 1.3547760917722137E-4 0.0021078722133750028 0.0 0.3377257565009927 6.375416902457476E-5 70-71 1.394622447412573E-4 0.002155687840143434 0.0 0.342865936378599 6.375416902457476E-5 72-73 1.5141615143336506E-4 0.002163657111271506 0.0 0.3468346334003788 6.375416902457476E-5 74-75 1.5141615143336506E-4 0.0022313959158601166 0.0 0.35043275931470325 6.375416902457476E-5 76-77 1.753239648175806E-4 0.002323042533832943 0.0 0.35360452922367586 6.375416902457476E-5 78-79 1.8329323594565243E-4 0.0023589042539092662 0.0 0.3564415897452694 6.375416902457476E-5 80-81 1.8329323594565243E-4 0.002362888889473302 0.0 0.35773261166801706 6.773880458861068E-5 82-83 1.8329323594565243E-4 0.00237484279616541 0.0 0.35827850674029 7.172344015264661E-5 84-85 1.8329323594565243E-4 0.002386796702857518 0.0 0.35850961560300404 7.172344015264661E-5 86-87 1.8329323594565243E-4 0.0024465662363180565 0.0 0.3585972775854128 7.172344015264661E-5 88-89 1.8329323594565243E-4 0.0025979823877514217 0.0 0.3586331393054892 7.172344015264661E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16275 0.0 50.23479 1 GTATCAA 30800 0.0 38.29123 1 TCAACGC 38940 0.0 29.704636 4 ATCAACG 38960 0.0 29.689386 3 CAACGCA 39795 0.0 29.141563 5 TATCAAC 40810 0.0 28.5955 2 AACGCAG 40915 0.0 28.364729 6 ACGCAGA 47000 0.0 24.710575 7 CGCAGAG 47575 0.0 24.429874 8 GCAGAGT 54975 0.0 21.032928 9 GTACATG 36920 0.0 19.992435 1 AGAGTAC 50690 0.0 19.753538 10-11 TACATGG 36320 0.0 19.581774 2 GTGGTAT 7910 0.0 19.116589 1 ACATGGG 36610 0.0 19.111101 3 GAGTACT 34520 0.0 18.95211 12-13 AGTACTT 37850 0.0 18.080397 12-13 CAGAGTA 54370 0.0 18.000118 10-11 CATGGGG 26820 0.0 17.837368 4 TGGTATC 7950 0.0 16.978666 2 >>END_MODULE