##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139042_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14240618 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.590595857567415 34.0 31.0 34.0 31.0 34.0 2 32.7192120454323 34.0 31.0 34.0 31.0 34.0 3 32.78425908201456 34.0 31.0 34.0 31.0 34.0 4 36.268086890611066 37.0 37.0 37.0 35.0 37.0 5 36.20677178476384 37.0 37.0 37.0 35.0 37.0 6 36.24321212745121 37.0 37.0 37.0 35.0 37.0 7 36.1913332693848 37.0 37.0 37.0 35.0 37.0 8 36.17074006198327 37.0 37.0 37.0 35.0 37.0 9 37.88699528349121 39.0 38.0 39.0 35.0 39.0 10-11 37.83709221748663 39.0 38.0 39.0 35.0 39.0 12-13 37.80710805528243 39.0 38.0 39.0 35.0 39.0 14-15 39.1803660136098 40.0 39.0 41.0 36.0 41.0 16-17 39.15222148364629 40.0 39.0 41.0 36.0 41.0 18-19 39.166062385775675 40.0 39.0 41.0 36.0 41.0 20-21 39.16128654654925 40.0 39.0 41.0 36.0 41.0 22-23 39.02839184262669 40.0 39.0 41.0 35.5 41.0 24-25 38.97063238124533 40.0 38.0 41.0 35.0 41.0 26-27 38.912244962764134 40.0 38.0 41.0 35.0 41.0 28-29 38.720430172079446 40.0 38.0 41.0 35.0 41.0 30-31 38.60660069548724 40.0 38.0 41.0 35.0 41.0 32-33 38.488804608692845 40.0 38.0 41.0 34.0 41.0 34-35 38.20568597331974 40.0 38.0 41.0 34.0 41.0 36-37 38.456316985342006 40.0 38.0 41.0 34.0 41.0 38-39 38.55587295912699 40.0 38.0 41.0 34.0 41.0 40-41 38.551491525396315 40.0 38.0 41.0 34.0 41.0 42-43 38.490748759971936 40.0 38.0 41.0 34.0 41.0 44-45 38.43786615895148 40.0 38.0 41.0 34.0 41.0 46-47 38.36460143371703 40.0 38.0 41.0 34.0 41.0 48-49 38.2975599804126 40.0 38.0 41.0 34.0 41.0 50-51 38.2229830083205 40.0 38.0 41.0 33.5 41.0 52-53 38.11080422208588 40.0 37.0 41.0 33.0 41.0 54-55 37.9636739309069 40.0 37.0 41.0 33.0 41.0 56-57 37.81939764320774 40.0 37.0 41.0 33.0 41.0 58-59 37.64904541517299 39.0 36.0 41.0 33.0 41.0 60-61 37.452373727173466 39.0 36.0 41.0 33.0 41.0 62-63 37.21702379754403 39.0 35.0 40.0 32.0 41.0 64-65 36.93529797261318 38.0 35.0 40.0 32.0 41.0 66-67 36.65384475146855 38.0 35.0 40.0 31.5 41.0 68-69 36.37085597477355 37.0 35.0 40.0 31.0 41.0 70-71 36.068099320033724 37.0 35.0 39.5 31.0 41.0 72-73 35.76942271056281 36.0 34.5 39.0 31.0 40.5 74-75 35.46023189394626 36.0 34.0 39.0 31.0 40.0 76-77 34.42443856882197 35.0 33.5 37.0 29.5 39.0 78-79 34.717616903348464 35.0 34.0 37.0 30.0 39.0 80-81 34.531989032293595 35.0 34.0 37.0 30.0 39.0 82-83 34.29442411442915 35.0 34.0 36.0 30.0 38.5 84-85 34.04333505760175 35.0 34.0 36.0 30.0 37.0 86-87 33.80428626064089 35.0 33.5 35.5 30.0 37.0 88-89 33.61205096810173 35.0 33.0 35.0 30.0 36.5 90-91 33.44488326391091 35.0 33.0 35.0 29.5 36.0 92-93 33.317134096843844 35.0 33.0 35.0 29.0 36.0 94-95 33.246238555952466 34.0 33.0 35.0 29.0 35.5 96-97 33.198592791651016 34.0 33.0 35.0 29.0 35.0 98-99 33.218758690415115 34.0 33.0 35.0 29.5 35.0 100-101 32.173761142706184 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 16.0 20 91.0 21 482.0 22 2178.0 23 7279.0 24 17482.0 25 34707.0 26 60410.0 27 93453.0 28 131947.0 29 174623.0 30 223617.0 31 280715.0 32 354732.0 33 463998.0 34 651519.0 35 947045.0 36 1620125.0 37 3217852.0 38 4052408.0 39 1832029.0 40 73907.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.19644190978523 21.96300904658836 15.51013555100878 24.33041349261763 2 13.474162064624789 22.394686728999105 41.46519435033438 22.665956856041724 3 16.392420494287745 27.67112115687163 31.916858629390365 24.01959971945026 4 11.81565377399027 19.366885578061684 39.640817529184304 29.176643118763746 5 12.524941861718492 38.42523817612678 36.17329221058329 12.876527751571437 6 28.44697670051796 39.37028852050442 19.258737174098567 12.923997604879059 7 24.993762559585726 33.49603461703941 24.288540306926308 17.22166251644855 8 23.855230108423 37.118661956476174 21.749885345525506 17.276222589575323 9 25.394895081098305 16.68975321155304 21.816525097436077 36.09882660991258 10-11 23.514365738902622 27.20609105587974 29.65813702748013 19.621406177737512 12-13 24.487753972475073 24.956265942952758 29.68180173079567 20.8741783537765 14-15 21.706951892236226 26.145543787608577 27.466520969724524 24.680983350430672 16-17 21.0051810680748 29.232650739256975 28.099970853661187 21.662197339007033 18-19 21.085916492183234 28.399972697793007 29.93566917477605 20.57844163524771 20-21 21.959487217012132 27.489923173281532 29.76604163819659 20.784547971509745 22-23 21.75746948497517 27.469890560450377 29.540875709532816 21.23176424504163 24-25 21.46283533792165 27.63567423696952 29.6538612015053 21.24762922360353 26-27 21.443603013827698 27.80228112295112 29.53614753480471 21.21796832841648 28-29 21.3365231447938 27.93052371580101 29.548095183535484 21.184857955869703 30-31 21.634750067280205 27.715475012378853 29.466155407739237 21.183619512601705 32-33 21.44022363579443 27.87038288906635 29.403942224493168 21.28545125064605 34-35 21.562493217504986 27.799491218894325 29.432914616668633 21.205100946932056 36-37 21.51874512823884 27.878309062393548 29.36719326509524 21.235752544272373 38-39 21.443673286318997 27.897926461940937 29.367959735618538 21.29044051612152 40-41 21.597912315266996 27.866514498196928 29.193275223845838 21.34229796269024 42-43 21.55472999940535 27.96270301695305 28.972061823580862 21.510505160060735 44-45 21.676831642891155 28.069816347544368 28.762778330931393 21.49057367863308 46-47 21.737757785611127 27.998461847361156 28.488486977111315 21.7752933899164 48-49 21.680414594678755 28.215541421226725 28.386080130791097 21.717963853303424 50-51 21.646055097854052 28.3070262366762 28.27029136519561 21.776627300274136 52-53 21.774466686612968 28.19633873112526 28.147584064130136 21.881610518131634 54-55 21.792700575402417 28.150223232819283 28.15673526867613 21.900340923102178 56-57 21.85822581849873 28.192544332450943 28.09466321022463 21.8545666388257 58-59 21.75528935907843 28.367552237831887 28.161253611162767 21.71590479192692 60-61 21.925467086556345 28.270933645164327 28.104023163537523 21.6995761047418 62-63 21.816609103188924 28.362826288874736 28.028795724586946 21.7917688833494 64-65 21.799239408278044 28.34393467169659 28.01540681265781 21.841419107367553 66-67 21.939619112493823 28.340584619806748 27.834276759340792 21.885519508358637 68-69 21.81447772283595 28.270560613029232 27.979431951218842 21.935529712915976 70-71 21.828938204085933 28.13072016347384 28.015540136087157 22.024801496353074 72-73 21.889101142145993 28.102937438677465 27.953467402486034 22.054494016690505 74-75 21.78230224903725 28.21896530381419 27.92212053537363 22.07661191177493 76-77 21.963858729960368 28.143667368102456 27.855957942147302 22.036515959789874 78-79 21.92703970003908 28.14776534431506 27.79146287024724 22.13373208539862 80-81 21.92969684984782 28.121510323143035 27.845457867117407 22.103334959891736 82-83 21.89314189514523 28.10637794441716 27.941531752698523 22.058948407739084 84-85 22.0610786606237 28.100008381838006 27.864862263713867 21.97405069382442 86-87 21.88302243862388 28.105847929507682 27.907115252776265 22.10401437909218 88-89 21.922298751335624 28.036432679195293 27.926928784274647 22.11433978519444 90-91 21.995527156339588 28.0752630643452 27.922638738389434 22.00657104092578 92-93 22.113053044332656 27.96034646917404 27.89043172118365 22.036168765309654 94-95 21.881930173842225 28.01097276513876 27.988564212128473 22.118532848890542 96-97 21.80540494276747 28.02485044137761 28.12587699238554 22.043867623469385 98-99 22.057861423486365 28.625523795614328 28.103246952633004 21.21336782826631 100-101 22.619053958008735 31.265195730031692 25.318875926907698 20.79687438505187 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4390.0 1 3925.0 2 5285.5 3 7465.5 4 9681.0 5 13988.5 6 17603.0 7 21486.0 8 24843.5 9 25363.5 10 23292.5 11 20843.5 12 22335.0 13 29444.0 14 47095.5 15 71496.0 16 90558.0 17 99599.5 18 99868.0 19 94449.0 20 86745.5 21 79909.5 22 77434.0 23 83446.0 24 99094.0 25 124363.0 26 155921.5 27 188663.0 28 222409.0 29 257289.5 30 287845.0 31 318413.0 32 353207.5 33 384591.5 34 415465.5 35 445705.5 36 475160.0 37 498982.0 38 512862.5 39 520534.5 40 528395.0 41 539872.5 42 546151.0 43 551324.0 44 560227.0 45 566797.0 46 570233.5 47 569474.0 48 563396.0 49 554403.0 50 541368.5 51 522041.0 52 495257.5 53 465879.5 54 438226.0 55 405976.0 56 370348.5 57 331487.0 58 291812.5 59 252055.5 60 210137.5 61 171747.5 62 134240.0 63 101646.5 64 76612.5 65 58334.5 66 45153.0 67 34417.5 68 26167.0 69 18514.5 70 12521.0 71 9047.5 72 6506.5 73 4621.5 74 3265.0 75 2246.0 76 1479.5 77 912.0 78 565.5 79 357.0 80 251.0 81 179.0 82 122.5 83 78.0 84 48.5 85 30.5 86 26.0 87 22.0 88 15.0 89 10.5 90 8.0 91 6.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.022167155947867E-6 2 0.0014044334311895735 3 4.21330029356872E-5 4 7.022167155947867E-6 5 7.022167155947867E-6 6 7.022167155947867E-6 7 7.022167155947867E-6 8 3.511083577973933E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 6.987056320168128E-4 16-17 0.002861533116048756 18-19 7.724383871542654E-5 20-21 7.022423088491169E-6 22-23 9.691814009453945E-4 24-25 0.005584804162344005 26-27 0.009515927107295558 28-29 0.36130518919800747 30-31 0.33038610542976615 32-33 0.3339896429584841 34-35 0.18881149005754821 36-37 0.04747845255872165 38-39 0.03783043408518176 40-41 0.02270915255565669 42-43 0.03042390704300564 44-45 0.019105366314997527 46-47 0.01440422162525672 48-49 0.009034941476877112 50-51 0.004928434117609722 52-53 0.0033940284808454085 54-55 4.6788260150550044E-4 56-57 0.0026147365546552465 58-59 0.005132611257545573 60-61 0.003683683115789192 62-63 0.0033922492394084076 64-65 3.7341241003621743E-4 66-67 9.738162715447722E-5 68-69 6.399833801239131E-4 70-71 9.416415766199439E-4 72-73 0.0016228702763047772 74-75 0.0019415649980427498 76-77 8.745542399182651E-4 78-79 1.0408552603588842E-4 80-81 0.0033630605642425353 82-83 0.0015782802320578769 84-85 7.652585234606881E-5 86-87 4.560389822121995E-6 88-89 0.00144264514536037 90-91 0.003609197078962755 92-93 0.015849473595244412 94-95 0.0016695719159366658 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 329.0 20-21 1005.0 22-23 2252.0 24-25 6543.0 26-27 7485.0 28-29 11864.0 30-31 31349.0 32-33 40858.0 34-35 58136.0 36-37 79642.0 38-39 94458.0 40-41 101797.0 42-43 119553.0 44-45 142814.0 46-47 140321.0 48-49 124184.0 50-51 112198.0 52-53 101639.0 54-55 108522.0 56-57 115762.0 58-59 119011.0 60-61 119216.0 62-63 118015.0 64-65 126986.0 66-67 135245.0 68-69 134624.0 70-71 131624.0 72-73 128147.0 74-75 131405.0 76-77 132178.0 78-79 139203.0 80-81 142821.0 82-83 139227.0 84-85 141762.0 86-87 148468.0 88-89 157052.0 90-91 169503.0 92-93 175089.0 94-95 197117.0 96-97 284646.0 98-99 1180510.0 100-101 8688058.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.08819145215858 #Duplication Level Percentage of deduplicated Percentage of total 1 87.90995306584006 71.28459104753114 2 7.783593087311067 12.623149728991557 3 2.1786980525504562 5.300000544049693 4 0.9104334872492663 2.9530161967409954 5 0.4508487981227307 1.8279256829075792 6 0.2485934880398703 1.209479781116214 7 0.1508431359787855 0.8562117962644222 8 0.10018302006332763 0.6498927928920444 9 0.0631164323655252 0.46061976162896323 >10 0.19927129661201048 2.4702399460872635 >50 0.003434767040128615 0.1904383524985787 >100 9.645669648051473E-4 0.11720570533057095 >500 3.3401467357022116E-5 0.02067910843475945 >1k 3.340039453494467E-5 0.03654955552622685 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.21330029356872E-5 0.0 0.0 0.0 3 0.0 4.915517009163507E-5 0.0 0.0 0.0 4 0.0 1.5448767743085306E-4 0.0 0.0 0.0 5 0.0 1.5448767743085306E-4 0.0 0.0 0.0 6 0.0 1.6150984458680094E-4 0.0 0.0 0.0 7 0.0 1.6150984458680094E-4 0.0 7.022167155947867E-6 0.0 8 0.0 2.0364284752248814E-4 0.0 1.4044334311895734E-5 0.0 9 0.0 2.949310205498104E-4 0.0 2.10665014678436E-5 0.0 10-11 0.0 2.949310205498104E-4 0.0 2.10665014678436E-5 0.0 12-13 0.0 3.0195318770575826E-4 0.0 3.5110835779739336E-5 0.0 14-15 0.0 4.4239653082471563E-4 0.0 3.5110835779739336E-5 0.0 16-17 7.022167155947867E-6 4.5644086513661134E-4 0.0 4.21330029356872E-5 0.0 18-19 7.022167155947867E-6 4.915517009163507E-4 0.0 7.022167155947866E-5 0.0 20-21 7.022167155947867E-6 5.30173620274064E-4 0.0 1.158657580731398E-4 0.0 22-23 7.022167155947867E-6 5.723066232097512E-4 0.0 3.7217485926523694E-4 0.0 24-25 7.022167155947867E-6 6.039063754115165E-4 0.0 0.0011481243299974763 0.0 26-27 7.022167155947867E-6 6.249728768793601E-4 0.0 0.00368663775687263 0.0 28-29 7.022167155947867E-6 6.249728768793601E-4 0.0 0.01821550160252877 0.0 30-31 7.022167155947867E-6 7.092388827507345E-4 0.0 0.02580646429810841 0.0 32-33 7.022167155947867E-6 7.619051364203436E-4 0.0 0.029040172273422406 0.0 34-35 7.022167155947867E-6 8.567043930256397E-4 0.0 0.03335178290717439 0.0 36-37 7.022167155947867E-6 9.51503649630936E-4 0.0 0.03938733557771158 0.0 38-39 7.022167155947867E-6 9.690590675208057E-4 0.0 0.05086857887768635 0.0 40-41 7.022167155947867E-6 0.0010322585719243363 0.0 0.07956115387688933 0.0 42-43 7.022167155947867E-6 0.0010638583241261018 0.0 0.09084577649649755 0.0 44-45 7.022167155947867E-6 0.0011691908314653198 0.0 0.10756555649480942 0.0 46-47 7.022167155947867E-6 0.0012499457537587203 0.0 0.12674309499770303 0.0 48-49 7.022167155947867E-6 0.0012499457537587203 0.0 0.1429537678772087 0.0 50-51 7.022167155947867E-6 0.0013868780132997036 0.0 0.15830773636368872 0.0 52-53 7.022167155947867E-6 0.0013939001804556517 0.0 0.18321887434941375 0.0 54-55 7.022167155947867E-6 0.001418477765501469 0.0 0.23701920801470833 0.0 56-57 7.022167155947867E-6 0.0014676329355931043 0.0 0.2919325551742207 0.0 58-59 7.022167155947867E-6 0.001478166186327026 0.0 0.3312988242504644 0.0 60-61 7.022167155947867E-6 0.0015202991892627133 0.0 0.35343620620959004 0.0 62-63 7.022167155947867E-6 0.0015589211086204265 0.0 0.3672839198411193 0.0 64-65 7.022167155947867E-6 0.0017309642039411493 0.0 0.37715357577880393 0.0 66-67 7.022167155947867E-6 0.0017625639561429146 0.0 0.3832804166223685 0.0 68-69 7.022167155947867E-6 0.0018362967112803671 0.0 0.3891158375289612 0.0 70-71 7.022167155947867E-6 0.0018749186306380805 0.0 0.3943052190572066 0.0 72-73 7.022167155947867E-6 0.001899496215683898 0.0 0.3985009639328855 0.0 74-75 7.022167155947867E-6 0.0019205627171517416 0.0 0.4019769366750797 0.0 76-77 7.022167155947867E-6 0.0019837622215552724 0.0 0.4050561569729628 0.0 78-79 7.022167155947867E-6 0.0020294063080689333 0.0 0.40772809157580103 0.0 80-81 7.022167155947867E-6 0.0020434506423808296 0.0 0.4090342146668073 0.0 82-83 7.022167155947867E-6 0.002053983893114751 0.0 0.40955034395276946 0.0 84-85 7.022167155947867E-6 0.0020785614781605685 0.0 0.40994007422992457 7.022167155947867E-6 86-87 7.022167155947867E-6 0.0020926058124724643 0.0 0.41005242890441973 7.022167155947867E-6 88-89 7.022167155947867E-6 0.002176871818343839 0.0 0.41008753974019946 7.022167155947867E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18970 0.0 50.61417 1 GTATCAA 35625 0.0 36.63752 1 TCAACGC 44645 0.0 28.712503 4 ATCAACG 44705 0.0 28.673965 3 CAACGCA 45515 0.0 28.154364 5 TATCAAC 46375 0.0 27.815655 2 AACGCAG 46470 0.0 27.63962 6 ACGCAGA 54305 0.0 23.581587 7 CGCAGAG 54660 0.0 23.428429 8 GTACATG 41320 0.0 20.538797 1 GCAGAGT 62895 0.0 20.307253 9 TACATGG 41185 0.0 20.214994 2 ACATGGG 41615 0.0 19.669552 3 AGAGTAC 57360 0.0 19.248917 10-11 GAGTACT 39100 0.0 18.935766 12-13 GTGGTAT 8995 0.0 18.285288 1 CAGAGTA 61660 0.0 17.944365 10-11 GGACCGA 2080 0.0 17.934175 6 AGTACTT 42615 0.0 17.727043 12-13 CATGGGG 32985 0.0 17.362047 4 >>END_MODULE