##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139041_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10389115 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.62951935751987 34.0 31.0 34.0 31.0 34.0 2 32.751000542394614 34.0 31.0 34.0 31.0 34.0 3 32.82030028544298 34.0 31.0 34.0 31.0 34.0 4 36.291436951078126 37.0 37.0 37.0 35.0 37.0 5 36.23263069087213 37.0 37.0 37.0 35.0 37.0 6 36.270811613886266 37.0 37.0 37.0 35.0 37.0 7 36.22233356739241 37.0 37.0 37.0 35.0 37.0 8 36.201554992894 37.0 37.0 37.0 35.0 37.0 9 37.93244573767833 39.0 38.0 39.0 35.0 39.0 10-11 37.884381008391955 39.0 38.0 39.0 35.0 39.0 12-13 37.86043724609844 39.0 38.0 39.0 35.0 39.0 14-15 39.2546481100652 41.0 39.0 41.0 36.0 41.0 16-17 39.22342398751 41.0 39.0 41.0 36.0 41.0 18-19 39.23562209100582 40.5 39.0 41.0 36.0 41.0 20-21 39.23326879221071 40.0 39.0 41.0 36.0 41.0 22-23 39.1019862813652 40.0 39.0 41.0 35.5 41.0 24-25 39.05166191773945 40.0 39.0 41.0 35.0 41.0 26-27 39.000612962759234 40.0 38.5 41.0 35.0 41.0 28-29 38.81091017009018 40.0 38.0 41.0 35.0 41.0 30-31 38.70501054740673 40.0 38.0 41.0 35.0 41.0 32-33 38.59126724155662 40.0 38.0 41.0 35.0 41.0 34-35 38.30983410582839 40.0 38.0 41.0 34.0 41.0 36-37 38.555641211595464 40.0 38.0 41.0 34.5 41.0 38-39 38.649423622714565 40.0 38.0 41.0 35.0 41.0 40-41 38.65066861332562 40.0 38.0 41.0 35.0 41.0 42-43 38.596648974451014 40.0 38.0 41.0 34.5 41.0 44-45 38.55053118944025 40.0 38.0 41.0 34.0 41.0 46-47 38.480280476497995 40.0 38.0 41.0 34.0 41.0 48-49 38.420270108126545 40.0 38.0 41.0 34.0 41.0 50-51 38.34687339030475 40.0 38.0 41.0 34.0 41.0 52-53 38.24938959113388 40.0 38.0 41.0 34.0 41.0 54-55 38.11692533571999 40.0 37.0 41.0 33.0 41.0 56-57 37.98230627573141 40.0 37.0 41.0 33.0 41.0 58-59 37.82750162269143 40.0 37.0 41.0 33.0 41.0 60-61 37.64144588821495 39.0 36.0 41.0 33.0 41.0 62-63 37.41889547858001 39.0 36.0 40.5 32.5 41.0 64-65 37.153082538509636 39.0 35.0 40.0 32.0 41.0 66-67 36.884647853075954 38.0 35.0 40.0 32.0 41.0 68-69 36.6085573650072 38.0 35.0 40.0 31.5 41.0 70-71 36.30316119126707 37.0 35.0 39.5 31.0 41.0 72-73 35.99692424984708 37.0 35.0 39.0 31.0 40.5 74-75 35.67947178542805 36.0 34.0 39.0 31.0 40.0 76-77 34.619344883108425 35.0 33.5 37.0 29.5 39.0 78-79 34.8999301245191 35.0 34.0 37.0 30.5 39.0 80-81 34.68804145329676 35.0 34.0 37.0 30.0 39.0 82-83 34.43006036389475 35.0 34.0 36.5 30.0 38.5 84-85 34.162124213979574 35.0 34.0 36.0 30.0 37.0 86-87 33.91182135975473 35.0 34.0 36.0 30.0 37.0 88-89 33.70891793423447 35.0 33.5 35.0 30.0 37.0 90-91 33.524760854749175 35.0 33.0 35.0 30.0 36.0 92-93 33.394576463055884 35.0 33.0 35.0 30.0 36.0 94-95 33.31314832374162 34.5 33.0 35.0 30.0 36.0 96-97 33.25816805030098 34.0 33.0 35.0 30.0 35.0 98-99 33.28087769098788 34.0 33.0 35.0 30.0 35.0 100-101 32.24890803531787 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 0.0 19 5.0 20 36.0 21 260.0 22 1279.0 23 4304.0 24 10510.0 25 22101.0 26 39142.0 27 61866.0 28 89109.0 29 120326.0 30 156772.0 31 197602.0 32 251892.0 33 329986.0 34 459318.0 35 663824.0 36 1126910.0 37 2308826.0 38 3162822.0 39 1331384.0 40 50839.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.991266627741304 22.056519930380976 15.622429400620689 24.329784041257028 2 13.235271185980604 22.28438138239944 42.07331617274632 22.407031258873637 3 16.444424423487895 27.566826199038726 31.913655004651986 24.075094372821397 4 11.468361158455009 19.661360888075816 40.006447133648464 28.863830819820713 5 12.339810690305256 38.414834989778726 36.46134790704963 12.784006412866391 6 28.016585437410736 39.74476553053513 19.4264592726579 12.812189759396231 7 24.74794289484166 33.47954406891675 24.288259807332945 17.484253228908646 8 23.321398075888524 37.50130786024246 21.941597097806383 17.235696966062626 9 24.811362661785918 17.089472972433168 22.005570253096632 36.093594112684286 10-11 23.044879183645577 27.466338566855793 29.93127422306905 19.557508026429584 12-13 24.14949685319683 25.121629705706404 29.818021073017288 20.910852368079475 14-15 21.344490083858993 26.543995158747247 27.505257580664406 24.606257176729358 16-17 20.81498150370441 29.65651015604538 28.14050311887654 21.388005221373675 18-19 20.746434272107734 28.752926260403562 29.93629003746518 20.564349430023526 20-21 21.56639211391883 27.88083900260044 29.827038843766463 20.725730039714268 22-23 21.37908411948645 27.937876596001733 29.6164445607125 21.066594723799316 24-25 21.144241313612543 28.047104502209745 29.776640496749874 21.03201368742784 26-27 21.18622852330579 28.185680543899178 29.63802343278997 20.990067500005058 28-29 20.94535491487209 28.193327692664322 29.67925456518478 21.182062827278802 30-31 21.299358328364416 28.103260877191396 29.67152487702378 20.925855917420407 32-33 21.262552046489695 28.08245529121213 29.691291016667286 20.963701645630888 34-35 21.13607090297244 28.189987538088378 29.754445935119726 20.919495623819458 36-37 21.233881394301346 28.17190812188025 29.537384464071863 21.056826019746538 38-39 21.01747066691653 28.255677289794846 29.633855901969774 21.092996141318856 40-41 21.222274869824954 28.15037177496167 29.569463826919844 21.057889528293533 42-43 21.190065999102046 28.222813712358736 29.366731874777873 21.22038841376134 44-45 21.238178469367504 28.415509477408186 29.103219730288245 21.243092322936064 46-47 21.434300087764253 28.25568387048143 28.72485276117458 21.585163280579742 48-49 21.349580408276385 28.39175534762552 28.734451551409784 21.524212692688312 50-51 21.25824754624478 28.545441813941387 28.666444159467126 21.5298664803467 52-53 21.330809233823537 28.548171709033028 28.672258057609906 21.448760999533526 54-55 21.381438214331787 28.48391343338792 28.525763736955454 21.608884615324836 56-57 21.537551464845684 28.642368972699273 28.318682884153873 21.50139667830117 58-59 21.333857038656916 28.777053159686737 28.58321096379165 21.305878837864693 60-61 21.478700612199777 28.747217977117224 28.37811207108943 21.395969339593567 62-63 21.459753101702546 28.848410891015146 28.38082909848399 21.311006908798312 64-65 21.334188827564713 28.779496989846297 28.34713508564317 21.539179096945816 66-67 21.378028552504983 28.745713172909156 28.239250960089475 21.637007314496387 68-69 21.39258165053433 28.75410391241297 28.359459571644773 21.493854865407926 70-71 21.3661604293776 28.557717421031136 28.443959700084108 21.632162449507156 72-73 21.386188919139492 28.555753609811603 28.287174505632983 21.77088296541592 74-75 21.38401786008755 28.62161819657933 28.222000318962404 21.772363624370715 76-77 21.44830059557726 28.432960774265826 28.30864963475978 21.810088995397138 78-79 21.405778978373164 28.34564826393447 28.370496903707494 21.87807585398488 80-81 21.584845266324763 28.411035220787856 28.172056925151363 21.832062587736022 82-83 21.646102931615093 28.525409375543465 28.286077294017176 21.542410398824266 84-85 21.59395290543161 28.32143418466182 28.17539755703257 21.909215352873996 86-87 21.411612293021438 28.537544646205866 28.261114428922856 21.78972863184984 88-89 21.720127693071415 28.25430315687 28.21030609195417 21.81526305810441 90-91 21.711313665203345 28.47307659409049 28.24020539599566 21.575404344710506 92-93 21.588890926322357 28.395594917408605 28.299083923926805 21.71643023234223 94-95 21.618204458935757 28.218428621445007 28.366778367016433 21.796588552602802 96-97 21.53006156221167 28.485833114109422 28.3975444422197 21.586560881459206 98-99 21.810648914304263 28.911069024299685 28.498051253231033 20.78023080816502 100-101 22.149500342409166 31.683103414213594 25.82925850819562 20.338137735181625 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2430.0 1 2125.0 2 2850.5 3 4100.0 4 5522.5 5 8313.5 6 10569.0 7 12692.0 8 14317.0 9 14277.0 10 13063.0 11 12162.5 12 13776.0 13 18880.0 14 31038.0 15 47681.5 16 60932.5 17 68092.0 18 68961.0 19 65221.5 20 59951.0 21 54901.0 22 53081.5 23 57740.0 24 68556.0 25 85648.0 26 107840.0 27 132286.0 28 158910.0 29 187780.0 30 214811.5 31 240569.0 32 267547.0 33 292601.5 34 315917.0 35 337722.0 36 361199.5 37 379927.0 38 391107.5 39 399444.5 40 407377.5 41 413850.0 42 416179.0 43 418122.0 44 420274.0 45 421979.0 46 421434.0 47 418588.5 48 411426.5 49 401977.5 50 390777.5 51 368766.5 52 339820.0 53 314676.0 54 290076.5 55 262808.0 56 235480.5 57 207586.0 58 179547.0 59 152196.0 60 124689.5 61 98692.5 62 75787.0 63 56785.5 64 41641.0 65 30665.0 66 22847.0 67 17138.0 68 12850.5 69 9125.0 70 6375.0 71 4479.0 72 3140.5 73 2150.5 74 1424.0 75 931.0 76 586.5 77 367.5 78 246.5 79 165.5 80 112.0 81 76.5 82 58.0 83 41.5 84 27.5 85 20.0 86 13.0 87 8.5 88 5.0 89 3.0 90 4.0 91 4.5 92 3.5 93 2.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.625458953914746E-6 2 0.001857713578105546 3 9.625458953914746E-6 4 1.925091790782949E-5 5 9.625458953914746E-6 6 9.625458953914746E-6 7 9.625458953914746E-6 8 7.700367163131797E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 6.593439383431601E-4 16-17 0.0026758775891883 18-19 1.925091790782949E-5 20-21 0.0 22-23 0.0012033118028763484 24-25 0.005955012934220696 26-27 0.010671407802359364 28-29 0.35918995777129453 30-31 0.32864326382346326 32-33 0.3316093089489288 34-35 0.18753485426798383 36-37 0.04654777778847395 38-39 0.0369865634704087 40-41 0.022551151317340982 42-43 0.02987331578181266 44-45 0.018744880285886827 46-47 0.014254064444661648 48-49 0.008505182481048456 50-51 0.0045180890691172565 52-53 0.0032061431143033253 54-55 4.921712393260363E-4 56-57 0.0026830871600863953 58-59 0.005125916237792201 60-61 0.003957062486301713 62-63 0.003083999283316983 64-65 3.4449313460170323E-4 66-67 4.348106350768044E-5 68-69 5.655235641864578E-4 70-71 8.593155235848294E-4 72-73 0.001438056526476859 74-75 0.0018692383621699588 76-77 9.06415299651777E-4 78-79 1.4393306306542306E-4 80-81 0.003316446993751349 82-83 0.001476175005898819 84-85 6.538860477540114E-5 86-87 3.60631581300964E-5 88-89 0.0013929472586372159 90-91 0.0037528643321056926 92-93 0.014577367911200076 94-95 0.0016442122712323033 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 155.0 20-21 682.0 22-23 1366.0 24-25 3087.0 26-27 4881.0 28-29 7285.0 30-31 18028.0 32-33 24219.0 34-35 34271.0 36-37 47550.0 38-39 56064.0 40-41 61468.0 42-43 73749.0 44-45 88875.0 46-47 88590.0 48-49 78101.0 50-51 69463.0 52-53 63205.0 54-55 70122.0 56-57 77804.0 58-59 48290.0 60-61 81529.0 62-63 80719.0 64-65 85442.0 66-67 95105.0 68-69 88840.0 70-71 84222.0 72-73 81656.0 74-75 82943.0 76-77 84465.0 78-79 90338.0 80-81 92220.0 82-83 90571.0 84-85 91403.0 86-87 97026.0 88-89 103939.0 90-91 114043.0 92-93 118544.0 94-95 134409.0 96-97 202448.0 98-99 914904.0 100-101 6657094.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.01890947935638 #Duplication Level Percentage of deduplicated Percentage of total 1 88.70739598798973 74.53098673664329 2 7.774891122382339 13.064757468465865 3 1.9861139719591385 5.006133900771595 4 0.7416173339280191 2.492395185904794 5 0.3150385881429469 1.3234599309843245 6 0.17110698766774915 0.8625733504885179 7 0.10088477128408879 0.5933359926454398 8 0.05602228392146654 0.3765544961299599 9 0.03592078240041205 0.27162224684350894 >10 0.10941240978466966 1.3446797664568921 >50 0.0012328815882104427 0.06286288769558851 >100 3.446433191762962E-4 0.05789064951182908 >500 1.8235632016255602E-5 0.012747387458396302 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.925091790782949E-5 0.0 0.0 0.0 3 0.0 1.925091790782949E-5 0.0 9.625458953914746E-6 0.0 4 0.0 7.700367163131797E-5 0.0 9.625458953914746E-6 0.0 5 0.0 7.700367163131797E-5 0.0 9.625458953914746E-6 0.0 6 0.0 7.700367163131797E-5 0.0 9.625458953914746E-6 0.0 7 2.887637686174424E-5 7.700367163131797E-5 0.0 9.625458953914746E-6 0.0 8 3.850183581565898E-5 7.700367163131797E-5 0.0 9.625458953914746E-6 0.0 9 4.812729476957373E-5 9.625458953914746E-5 0.0 4.812729476957373E-5 0.0 10-11 4.812729476957373E-5 9.625458953914746E-5 0.0 5.2940024246531105E-5 0.0 12-13 5.7752753723488474E-5 9.625458953914746E-5 0.0 6.737821267740323E-5 0.0 14-15 6.737821267740323E-5 1.1550550744697696E-4 0.0 8.181640110827534E-5 0.0 16-17 8.181640110827534E-5 1.1550550744697696E-4 0.0 1.1069277797001959E-4 0.0 18-19 8.662913058523272E-5 1.3475642535480645E-4 0.0 1.7807099064742283E-4 0.0 20-21 8.662913058523272E-5 1.6363280221655068E-4 0.0 3.032019570483145E-4 0.0 22-23 1.0106731901610483E-4 1.7325826117046544E-4 0.0 6.112166435735864E-4 0.0 24-25 1.2031823692393434E-4 1.8288372012438016E-4 0.0 0.0012561223934858742 0.0 26-27 1.251309664008917E-4 1.9250917907829491E-4 0.0 0.0031667759958379513 0.0 28-29 1.251309664008917E-4 1.9250917907829491E-4 0.0 0.013326447921694965 0.0 30-31 1.251309664008917E-4 2.3582374437091129E-4 0.0 0.018529008486285886 0.0 32-33 1.251309664008917E-4 2.45449203324826E-4 0.0 0.02077655315202498 0.0 34-35 1.251309664008917E-4 3.032019570483145E-4 0.0 0.023640127190814618 0.0 36-37 1.251309664008917E-4 3.561419812948456E-4 0.0 0.027947520072691467 0.0 38-39 1.251309664008917E-4 3.561419812948456E-4 0.0 0.036591182213306914 0.0 40-41 1.251309664008917E-4 3.946438171105046E-4 0.0 0.05582766193270553 0.0 42-43 1.251309664008917E-4 4.3795838240312095E-4 0.0 0.06422587486999615 0.0 44-45 1.299436958778491E-4 5.6790207828097E-4 0.0 0.07579567653260166 0.0 46-47 1.8288372012438016E-4 6.641566678201175E-4 0.0 0.08919912812592795 0.0 48-49 1.9250917907829491E-4 6.641566678201175E-4 0.0 0.10136570824367619 0.0 50-51 1.9250917907829491E-4 7.796621752670944E-4 0.0 0.11294513536523562 0.0 52-53 1.9250917907829491E-4 7.892876342210092E-4 0.0 0.12942873382381465 0.0 54-55 2.0213463803220967E-4 7.941003636979665E-4 0.0 0.166756263647096 0.0 56-57 2.310110148939539E-4 7.98913093174924E-4 0.0 0.20578268697574337 0.0 58-59 2.502619328017834E-4 7.98913093174924E-4 0.0 0.23606438084475917 0.0 60-61 2.502619328017834E-4 8.085385521288387E-4 0.0 0.5437229253887361 0.0 62-63 2.502619328017834E-4 8.326021995136256E-4 0.0 0.5501334810520434 0.0 64-65 2.502619328017834E-4 9.336695185297304E-4 0.0 0.5566499167638437 0.0 66-67 2.502619328017834E-4 9.577331659145173E-4 0.0 0.5623578139235151 0.0 68-69 2.5507466227874074E-4 0.0010154859196380057 0.0 0.5683881639581427 0.0 70-71 2.598873917556981E-4 0.0010299241080688778 0.0 0.5740671847409524 0.0 72-73 2.647001212326555E-4 0.0010347368375458353 0.0 0.5782013193616589 0.0 74-75 2.695128507096129E-4 0.0010491750259767072 0.0 0.5816279827492525 0.0 76-77 2.695128507096129E-4 0.0010876768617923663 0.0 0.5846792532376435 0.0 78-79 2.695128507096129E-4 0.0010973023207462812 0.0 0.5872925653436313 0.0 80-81 2.743255801865703E-4 0.0011069277797001959 0.0 0.5886449423266563 0.0 82-83 2.7913830966352763E-4 0.0011069277797001959 0.0 0.5892176571344143 0.0 84-85 2.7913830966352763E-4 0.0011261786976080254 0.0 0.5895545481978013 0.0 86-87 2.887637686174424E-4 0.0011454296155158548 0.0 0.5896508027873404 0.0 88-89 2.887637686174424E-4 0.001174305992377599 0.0 0.5896844918936791 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15120 0.0 42.970856 1 GTATCAA 26520 0.0 33.915752 1 ATCAACG 31735 0.0 27.86713 3 TCAACGC 31855 0.0 27.829733 4 CAACGCA 32235 0.0 27.501665 5 TATCAAC 33275 0.0 26.823645 2 AACGCAG 33520 0.0 26.511602 6 ACGCAGA 38110 0.0 23.318521 7 CGCAGAG 38115 0.0 23.292871 8 GCAGAGT 43945 0.0 20.124517 9 GTACATG 26670 0.0 19.53435 1 GAGTACT 26890 0.0 19.383654 12-13 AGAGTAC 38610 0.0 19.204145 10-11 TACATGG 26665 0.0 19.10204 2 ACATGGG 26825 0.0 18.1853 3 CAGAGTA 43490 0.0 17.430437 10-11 CTTATAC 13640 0.0 17.298273 1 GTACTTT 30575 0.0 17.05517 14-15 AGTACTT 30165 0.0 17.000828 12-13 TATACAC 19080 0.0 15.615576 3 >>END_MODULE