##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139039_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9983812 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.652106429888704 34.0 31.0 34.0 31.0 34.0 2 32.76473435196897 34.0 31.0 34.0 31.0 34.0 3 32.83242623158369 34.0 31.0 34.0 31.0 34.0 4 36.29923500162062 37.0 37.0 37.0 35.0 37.0 5 36.24453024556151 37.0 37.0 37.0 35.0 37.0 6 36.28470998852943 37.0 37.0 37.0 35.0 37.0 7 36.23558877110266 37.0 37.0 37.0 35.0 37.0 8 36.21534890681034 37.0 37.0 37.0 35.0 37.0 9 37.94820555515268 39.0 38.0 39.0 35.0 39.0 10-11 37.902806262778185 39.0 38.0 39.0 35.0 39.0 12-13 37.87582067851438 39.0 38.0 39.0 35.0 39.0 14-15 39.2666672309134 41.0 39.0 41.0 36.0 41.0 16-17 39.23716031511812 41.0 39.0 41.0 36.0 41.0 18-19 39.25734118390851 41.0 39.0 41.0 36.0 41.0 20-21 39.257989221599225 41.0 39.0 41.0 36.0 41.0 22-23 39.12703519878666 40.0 39.0 41.0 36.0 41.0 24-25 39.07529712952787 40.0 39.0 41.0 35.0 41.0 26-27 39.02197804401085 40.0 38.5 41.0 35.0 41.0 28-29 38.82533379089388 40.0 38.5 41.0 35.0 41.0 30-31 38.7157270622329 40.0 38.0 41.0 35.0 41.0 32-33 38.59477141419566 40.0 38.0 41.0 35.0 41.0 34-35 38.312013431296734 40.0 38.0 41.0 34.0 41.0 36-37 38.55630789640817 40.0 38.0 41.0 34.5 41.0 38-39 38.646793912472184 40.0 38.0 41.0 35.0 41.0 40-41 38.649571590421054 40.0 38.0 41.0 35.0 41.0 42-43 38.59563249989414 40.0 38.0 41.0 34.5 41.0 44-45 38.54611515014373 40.0 38.0 41.0 34.0 41.0 46-47 38.4739736188713 40.0 38.0 41.0 34.0 41.0 48-49 38.40931420243198 40.0 38.0 41.0 34.0 41.0 50-51 38.33330284359124 40.0 38.0 41.0 34.0 41.0 52-53 38.23568389567833 40.0 37.5 41.0 34.0 41.0 54-55 38.10341460108086 40.0 37.0 41.0 33.0 41.0 56-57 37.96905527627565 40.0 37.0 41.0 33.0 41.0 58-59 37.81310262159695 40.0 36.5 41.0 33.0 41.0 60-61 37.62774234975761 39.0 36.0 41.0 33.0 41.0 62-63 37.40943751686899 39.0 36.0 40.5 33.0 41.0 64-65 37.14900172907206 39.0 35.0 40.0 32.0 41.0 66-67 36.883255793139895 38.0 35.0 40.0 32.0 41.0 68-69 36.609219556649236 38.0 35.0 40.0 32.0 41.0 70-71 36.31262730487663 37.0 35.0 40.0 31.0 41.0 72-73 36.01200790975956 37.0 35.0 39.0 31.0 41.0 74-75 35.698426170537026 36.0 34.5 39.0 31.0 40.0 76-77 34.64533078544 35.0 33.5 37.0 29.5 39.0 78-79 34.92347291840967 35.0 34.0 37.0 30.5 39.0 80-81 34.71502050075449 35.0 34.0 37.0 30.5 39.0 82-83 34.461862331533254 35.0 34.0 36.5 30.0 39.0 84-85 34.196318613437384 35.0 34.0 36.0 30.0 37.5 86-87 33.94414794135361 35.0 34.0 36.0 30.0 37.0 88-89 33.74017536036959 35.0 33.5 35.0 30.0 37.0 90-91 33.56096506452728 35.0 33.0 35.0 30.0 36.0 92-93 33.42854352120396 35.0 33.0 35.0 30.0 36.0 94-95 33.34706420937383 35.0 33.0 35.0 30.0 36.0 96-97 33.290020933648336 34.0 33.0 35.0 30.0 35.0 98-99 33.3085121393163 34.0 33.0 35.0 30.0 35.0 100-101 32.28315113446889 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 9.0 20 41.0 21 253.0 22 1178.0 23 4096.0 24 10141.0 25 20911.0 26 36530.0 27 58049.0 28 84012.0 29 114212.0 30 148190.0 31 189170.0 32 240691.0 33 314625.0 34 442908.0 35 640020.0 36 1082261.0 37 2207714.0 38 3016345.0 39 1321832.0 40 50621.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.440491311384 21.866479643895502 15.596278815774859 24.09675022894564 2 13.286399907047977 22.140250379495665 42.2229356111921 22.350414102264253 3 16.471696028700862 27.674983030027313 31.851183881585897 24.00213705968593 4 11.449536800079327 19.706765252944518 39.709810182685764 29.133887764290385 5 12.301955635979086 38.517245568851415 36.264228158966546 12.916570636202948 6 27.972023909507097 39.552371333952536 19.449977568685945 13.025627187854418 7 24.875561045777008 33.55738605228004 24.00311864878051 17.563934253162444 8 23.617023045417447 37.310887520161394 21.771013802650632 17.301075631770527 9 24.944870756781075 17.069742499157638 21.764231938662306 36.22115480539898 10-11 23.145668207694616 27.494017315229897 29.644418384480797 19.715896092594694 12-13 24.33683647087906 25.14564076326758 29.619508059646954 20.898014706206407 14-15 21.50195707947131 26.501789807721625 27.377762913629482 24.618490199177582 16-17 20.795708407025618 29.725766035002287 27.999536035339844 21.47898952263225 18-19 20.772531961004454 28.597968690700853 30.000444720135317 20.62905462815938 20-21 21.681603649442057 27.666025929545025 29.91774421802818 20.73462620298474 22-23 21.504682074804407 27.82882636238665 29.660790369528243 21.0057011932807 24-25 21.230565366599034 27.962811552816813 29.863279977956463 20.94334310262769 26-27 21.22990901294299 28.09772678703383 29.71625233401668 20.956111866006495 28-29 20.914566474366573 28.04994418189682 29.823196126724326 21.21229321701228 30-31 21.368662561354093 27.96305923671158 29.80097787868729 20.867300323247036 32-33 21.35480703017719 27.911313681817557 29.84917559862341 20.884703689381837 34-35 21.073316031263353 28.068833167112352 29.977892323359097 20.879958478265195 36-37 21.21071097460462 28.116667878642282 29.66780085978023 21.00482028697287 38-39 20.98841269259585 28.0528987100557 29.80123538226001 21.157453215088438 40-41 21.141260465462448 27.958869213570935 29.80385982215535 21.096010498811264 42-43 21.210851345390385 28.011091689374982 29.605565838998388 21.172491126236245 44-45 21.208055790326593 28.29783747646777 29.26297330204777 21.23113343115787 46-47 21.45989926946122 28.160850314990153 28.754427499802222 21.624822915746403 48-49 21.38938414357848 28.25413574071859 28.78198377555698 21.574496340145952 50-51 21.270973974476664 28.43520324988823 28.74109223076265 21.552730544872457 52-53 21.361095228814772 28.469398005757206 28.762265040606334 21.407241724821684 54-55 21.357851342201723 28.46722154883205 28.555187370612018 21.61973973835421 56-57 21.57197868037535 28.62671709016176 28.28858736715562 21.512716862307276 58-59 21.320590099732026 28.783676375276922 28.621225864473903 21.27450766051715 60-61 21.461997751566795 28.80968008148369 28.33866550244518 21.389656664504336 62-63 21.446848236814358 28.95255209960219 28.292852855793306 21.30774680779015 64-65 21.31104381304305 28.81237400416184 28.305914171871976 21.570668010923136 66-67 21.372349886993835 28.720062030127796 28.280537557200624 21.627050525677745 68-69 21.422900170508115 28.73425594192987 28.363182576196444 21.479661311365568 70-71 21.406205679722976 28.525297032059644 28.438118665237518 21.63037862297987 72-73 21.413499246357315 28.5416241431699 28.272223469773976 21.772653140698807 74-75 21.40387419608818 28.619604737869768 28.172668789160717 21.803852276881333 76-77 21.496060304877318 28.412805805362296 28.270390017842388 21.820743871917998 78-79 21.4530185296671 28.353334855023892 28.284247926212764 21.90939868909624 80-81 21.61299039537315 28.379116814516376 28.14321959808519 21.864673192025286 82-83 21.67897326175178 28.539290394167704 28.231216008049493 21.550520336031024 84-85 21.6229450896282 28.309885151584336 28.141867029370864 21.925302729416593 86-87 21.44947643519234 28.515266675402962 28.20959955376657 21.825657335638134 88-89 21.7280196457435 28.250336142380476 28.20624193618011 21.815402275695906 90-91 21.759924773975218 28.41780383816036 28.25267986232756 21.569591525536865 92-93 21.606566798307735 28.34914078229776 28.24453807925029 21.799754340144215 94-95 21.624356913768334 28.20151928235419 28.336498198867783 21.83762560500969 96-97 21.60601222789134 28.442215326204025 28.403404825883094 21.54836762002154 98-99 21.861629678044753 28.850834948177667 28.509419479059932 20.778115894717647 100-101 22.205705773856927 31.6112072667647 25.817544356357896 20.365542603020476 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2837.0 1 2488.5 2 3198.5 3 4459.0 4 6030.0 5 9220.5 6 11726.0 7 14122.5 8 16152.0 9 16405.0 10 15027.5 11 13513.5 12 14998.0 13 20791.5 14 34409.0 15 52736.5 16 67220.5 17 74736.5 18 75075.0 19 70105.5 20 63172.0 21 56765.0 22 54132.0 23 57879.5 24 67785.5 25 83755.0 26 104660.0 27 127062.5 28 151977.5 29 180278.5 30 205355.5 31 228618.0 32 253985.5 33 277748.0 34 300396.0 35 320763.5 36 340514.5 37 358526.0 38 368327.0 39 373008.5 40 380083.5 41 388320.5 42 391997.0 43 394286.0 44 396056.0 45 395716.0 46 394219.5 47 391167.5 48 387588.0 49 386614.0 50 383746.5 51 365861.0 52 336229.5 53 311460.5 54 287294.0 55 259513.0 56 233189.5 57 205773.0 58 178144.0 59 151979.5 60 126217.5 61 101101.5 62 78411.5 63 59428.5 64 44126.5 65 32713.0 66 24709.5 67 18874.0 68 14276.5 69 10279.0 70 7239.0 71 5190.5 72 3703.5 73 2620.5 74 1827.5 75 1249.5 76 808.5 77 500.5 78 330.5 79 202.0 80 123.5 81 82.5 82 60.5 83 46.5 84 33.5 85 20.0 86 13.0 87 11.5 88 9.0 89 8.0 90 5.5 91 3.0 92 3.0 93 3.0 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.0016214247624054E-5 2 0.001672707779353217 3 1.0016214247624054E-5 4 2.0032428495248107E-5 5 1.0016214247624054E-5 6 1.0016214247624054E-5 7 1.0016214247624054E-5 8 5.0081071238120265E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 5.809404263621952E-4 16-17 0.0029347507745538476 18-19 5.0081071238120265E-5 20-21 0.0 22-23 0.001011745463273239 24-25 0.005500561628382658 26-27 0.009842296739032605 28-29 0.3621742387246413 30-31 0.3319558594718689 32-33 0.33461708314195093 34-35 0.18851550456449348 36-37 0.04612156697517635 38-39 0.03640893522893161 40-41 0.022364041977665026 42-43 0.029879472390337183 44-45 0.018829512812197868 46-47 0.014351443778323907 48-49 0.008715511052205223 50-51 0.0044045048100662745 52-53 0.0032480571348307233 54-55 3.736529810034825E-4 56-57 0.0026256619424767143 58-59 0.005088193985743695 60-61 0.0037215894443318057 62-63 0.003073784978904614 64-65 4.005224392132453E-4 66-67 5.700037899551994E-5 68-69 8.757224782462182E-4 70-71 0.0010708042543053024 72-73 0.0019799840649472374 74-75 0.002075639382920714 76-77 0.00105376753026109 78-79 9.676878152016256E-5 80-81 0.0036680870314783004 82-83 0.001464939002906884 84-85 6.873179896048778E-5 86-87 2.5273749458036033E-5 88-89 0.0014772459990614693 90-91 0.004283448695916681 92-93 0.01518704722382749 94-95 0.0016759406500673315 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 146.0 20-21 622.0 22-23 1367.0 24-25 3339.0 26-27 4643.0 28-29 7253.0 30-31 18066.0 32-33 24146.0 34-35 34914.0 36-37 47912.0 38-39 56303.0 40-41 61924.0 42-43 75120.0 44-45 92208.0 46-47 92126.0 48-49 80437.0 50-51 69871.0 52-53 63142.0 54-55 70713.0 56-57 79712.0 58-59 50856.0 60-61 83003.0 62-63 81883.0 64-65 86674.0 66-67 96559.0 68-69 87983.0 70-71 82949.0 72-73 79041.0 74-75 79928.0 76-77 82054.0 78-79 87682.0 80-81 90266.0 82-83 87243.0 84-85 87726.0 86-87 92839.0 88-89 100755.0 90-91 109739.0 92-93 112972.0 94-95 128082.0 96-97 191126.0 98-99 865948.0 100-101 6334540.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.37554001920992 #Duplication Level Percentage of deduplicated Percentage of total 1 88.23259919421096 73.56440605115844 2 8.073417019206676 13.462510075532736 3 2.069966040579111 5.177536093641275 4 0.7537680462945394 2.513832716361282 5 0.36689218807266816 1.5294917154694119 6 0.18246317305722215 0.912777935235867 7 0.10493581737982809 0.6124356308980252 8 0.05834603392517927 0.3891705669192771 9 0.04239204616390964 0.31810137672917177 >10 0.11375459138414198 1.3858953919140806 >50 0.001172943256228317 0.06334057749615686 >100 2.53833106503899E-4 0.045270504720662574 >500 3.907336303257178E-5 0.025231363923622428 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.0064856990496215E-5 0.0 0.0 0.0 3 0.0 4.0064856990496215E-5 0.0 0.0 0.0 4 0.0 7.011349973336837E-5 0.0 4.0064856990496215E-5 0.0 5 0.0 7.011349973336837E-5 0.0 4.0064856990496215E-5 1.0016214247624054E-5 6 0.0 7.011349973336837E-5 0.0 5.008107123812027E-5 1.0016214247624054E-5 7 0.0 7.011349973336837E-5 0.0 6.009728548574432E-5 2.0032428495248107E-5 8 0.0 8.012971398099243E-5 0.0 6.009728548574432E-5 2.0032428495248107E-5 9 0.0 1.302107852191127E-4 0.0 9.014592822861649E-5 2.0032428495248107E-5 10-11 0.0 1.302107852191127E-4 0.0 1.0517024960005257E-4 2.0032428495248107E-5 12-13 0.0 1.302107852191127E-4 0.0 1.2019457097148864E-4 2.0032428495248107E-5 14-15 0.0 1.5525132083817284E-4 0.0 1.2019457097148864E-4 2.0032428495248107E-5 16-17 0.0 1.6025942796198486E-4 0.0 1.6025942796198486E-4 2.0032428495248107E-5 18-19 0.0 1.7528374933342092E-4 0.0 1.6526753508579688E-4 2.0032428495248107E-5 20-21 0.0 2.053323920762931E-4 0.0 1.8029185645723295E-4 2.0032428495248107E-5 22-23 0.0 2.403891419429773E-4 0.0 4.006485699049622E-4 2.0032428495248107E-5 24-25 0.0 2.7043778468584945E-4 0.0 0.001106791674362458 2.0032428495248107E-5 26-27 0.0 2.804539989334735E-4 0.0 0.0032452534162301936 2.0032428495248107E-5 28-29 0.0 2.804539989334735E-4 0.0 0.014463413373569134 2.0032428495248107E-5 30-31 0.0 3.105026416763457E-4 0.0 0.02050819867201025 2.0032428495248107E-5 32-33 0.0 3.205188559239697E-4 0.0 0.022721782020735166 2.0032428495248107E-5 34-35 0.0 3.6559182003827797E-4 0.0 0.025681573330908074 2.0032428495248107E-5 36-37 0.0 4.106647841525862E-4 0.0 0.030083699492738848 2.0032428495248107E-5 38-39 0.0 4.106647841525862E-4 0.0 0.03815676817632384 2.0032428495248107E-5 40-41 0.0 4.306972126478343E-4 0.0 0.057808580530162225 2.0032428495248107E-5 42-43 0.0 4.4071342689545835E-4 0.0 0.06592672217786152 2.0032428495248107E-5 44-45 0.0 5.208431408764508E-4 0.0 0.07746540099112442 2.0032428495248107E-5 46-47 0.0 5.909566406098192E-4 0.0 0.09040634979905471 2.0032428495248107E-5 48-49 0.0 5.909566406098192E-4 0.0 0.10257104200279413 2.0032428495248107E-5 50-51 0.0 6.109890691050673E-4 0.0 0.11377417763876163 2.0032428495248107E-5 52-53 0.0 6.109890691050673E-4 0.0 0.1302157933262365 2.0032428495248107E-5 54-55 0.0 6.109890691050673E-4 0.0 0.16625413218918786 2.0032428495248107E-5 56-57 0.0 6.210052833526913E-4 0.0 0.203950154510121 2.0032428495248107E-5 58-59 0.0 6.210052833526913E-4 0.0 0.2334378892551262 2.0032428495248107E-5 60-61 0.0 6.360296047241274E-4 0.0 0.5481022679513596 2.0032428495248107E-5 62-63 0.0 6.510539260955635E-4 0.0 0.554432515355858 2.0032428495248107E-5 64-65 0.0 7.962890326861123E-4 0.0 0.5605524222611564 2.0032428495248107E-5 66-67 0.0 8.163214611813604E-4 0.0 0.5662015670968163 2.0032428495248107E-5 68-69 0.0 8.263376754289845E-4 0.0 0.5717104849330096 2.0032428495248107E-5 70-71 0.0 8.363538896766085E-4 0.0 0.5770240865913742 2.0032428495248107E-5 72-73 0.0 8.513782110480446E-4 0.0 0.5807501182914903 2.0032428495248107E-5 74-75 0.0 8.664025324194806E-4 0.0 0.5840354365647109 2.0032428495248107E-5 76-77 0.0 9.26499817905225E-4 0.0 0.586910090053779 2.0032428495248107E-5 78-79 0.0 9.415241392766611E-4 0.0 0.5896845814003709 2.0032428495248107E-5 80-81 0.0 9.415241392766611E-4 0.0 0.5909015514314573 2.0032428495248107E-5 82-83 0.0 9.415241392766611E-4 0.0 0.5912120540731336 2.0032428495248107E-5 84-85 0.0 9.415241392766611E-4 0.0 0.5915025242863148 2.0032428495248107E-5 86-87 0.0 9.415241392766611E-4 0.0 0.5916427512857814 2.0032428495248107E-5 88-89 0.0 9.515403535242851E-4 0.0 0.5916778080356481 2.0032428495248107E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14840 0.0 52.648148 1 GTATCAA 27375 0.0 36.84273 1 ATCAACG 34280 0.0 28.858608 3 TCAACGC 34380 0.0 28.762197 4 CAACGCA 35040 0.0 28.244919 5 TATCAAC 35755 0.0 27.907969 2 AACGCAG 36115 0.0 27.57041 6 CGCAGAG 41175 0.0 24.130209 8 ACGCAGA 41200 0.0 24.09475 7 CTTATAC 13820 0.0 21.378628 1 GCAGAGT 47835 0.0 20.636332 9 GTGGTAT 7300 0.0 20.442078 1 GTACATG 32885 0.0 20.394241 1 TGGTATC 6800 0.0 20.36865 2 TACATGG 33070 0.0 19.865211 2 GAGTACT 29275 0.0 19.38818 12-13 ACATGGG 33045 0.0 19.348198 3 AGAGTAC 44290 0.0 19.065483 10-11 CAGAGTA 47425 0.0 18.505983 10-11 TATACAC 18885 0.0 18.074434 3 >>END_MODULE