##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139037_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11138978 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.699687799006334 34.0 31.0 34.0 31.0 34.0 2 32.80671889288227 34.0 31.0 34.0 31.0 34.0 3 32.87385243062694 34.0 31.0 34.0 31.0 34.0 4 36.32297900220289 37.0 37.0 37.0 35.0 37.0 5 36.265978620300714 37.0 37.0 37.0 35.0 37.0 6 36.302356104841934 37.0 37.0 37.0 35.0 37.0 7 36.25137772962654 37.0 37.0 37.0 35.0 37.0 8 36.22945641871274 37.0 37.0 37.0 35.0 37.0 9 37.96819573573087 39.0 38.0 39.0 35.0 39.0 10-11 37.9250213978338 39.0 38.0 39.0 35.0 39.0 12-13 37.903938359515564 39.0 38.0 39.0 35.0 39.0 14-15 39.3181469161713 41.0 39.0 41.0 36.0 41.0 16-17 39.292175143895605 41.0 39.0 41.0 36.0 41.0 18-19 39.30146459576453 41.0 39.0 41.0 36.0 41.0 20-21 39.29327867347253 41.0 39.0 41.0 36.0 41.0 22-23 39.162858253016005 40.5 39.0 41.0 36.0 41.0 24-25 39.11343696148238 40.0 39.0 41.0 36.0 41.0 26-27 39.06606858088948 40.0 39.0 41.0 35.5 41.0 28-29 38.875884161262995 40.0 39.0 41.0 35.0 41.0 30-31 38.768286116138874 40.0 38.0 41.0 35.0 41.0 32-33 38.66327389959497 40.0 38.0 41.0 35.0 41.0 34-35 38.38398886215488 40.0 38.0 41.0 34.0 41.0 36-37 38.63702399961874 40.0 38.0 41.0 35.0 41.0 38-39 38.74138297475503 40.0 38.0 41.0 35.0 41.0 40-41 38.73124332124634 40.0 38.0 41.0 35.0 41.0 42-43 38.67254969188074 40.0 38.0 41.0 35.0 41.0 44-45 38.621525195157105 40.0 38.0 41.0 34.5 41.0 46-47 38.550415070169734 40.0 38.0 41.0 34.0 41.0 48-49 38.48472857798035 40.0 38.0 41.0 34.0 41.0 50-51 38.41084633642552 40.0 38.0 41.0 34.0 41.0 52-53 38.299598551527794 40.0 38.0 41.0 34.0 41.0 54-55 38.15964802879999 40.0 37.0 41.0 34.0 41.0 56-57 38.01483645640019 40.0 37.0 41.0 33.0 41.0 58-59 37.84865783143932 40.0 36.5 41.0 33.0 41.0 60-61 37.653310514742834 39.0 36.0 41.0 33.0 41.0 62-63 37.41850784281345 39.0 36.0 40.5 33.0 41.0 64-65 37.14137970972559 39.0 35.0 40.0 32.0 41.0 66-67 36.85798409366808 38.0 35.0 40.0 32.0 41.0 68-69 36.57313067108993 37.5 35.0 40.0 32.0 41.0 70-71 36.2618094448099 37.0 35.0 39.5 31.0 41.0 72-73 35.95615194876788 36.5 35.0 39.0 31.0 40.5 74-75 35.6290336866074 36.0 34.0 39.0 31.0 40.0 76-77 34.567643273511806 35.0 33.5 37.0 29.5 39.0 78-79 34.81497582587366 35.0 34.0 37.0 30.5 39.0 80-81 34.597522487267554 35.0 34.0 37.0 30.0 39.0 82-83 34.352896922222556 35.0 34.0 36.0 30.0 38.5 84-85 34.11146329477759 35.0 34.0 36.0 30.0 37.0 86-87 33.881202956096104 35.0 34.0 35.5 30.0 37.0 88-89 33.68820275261369 35.0 33.0 35.0 30.0 36.5 90-91 33.53880338136606 35.0 33.0 35.0 30.0 36.0 92-93 33.427035163596585 35.0 33.0 35.0 30.0 36.0 94-95 33.35640392862139 35.0 33.0 35.0 30.0 35.5 96-97 33.293476929627445 34.0 33.0 35.0 30.0 35.0 98-99 33.29784734615748 34.0 33.0 35.0 30.0 35.0 100-101 32.25822904449828 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 1.0 17 0.0 18 2.0 19 11.0 20 55.0 21 301.0 22 1374.0 23 4536.0 24 11395.0 25 23720.0 26 42034.0 27 66221.0 28 95129.0 29 128000.0 30 163688.0 31 207403.0 32 261387.0 33 341246.0 34 480479.0 35 700661.0 36 1209734.0 37 2495509.0 38 3400001.0 39 1440756.0 40 65334.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.194706946132214 21.34622608038656 15.272983800306239 24.186083173174985 2 13.662001394051543 22.00245700686863 41.47188429300363 22.863657306076192 3 16.64577605697328 27.260270602971044 31.640017897515893 24.45393544253978 4 11.950210858719048 19.080804113484408 39.61013468474433 29.35885034305221 5 12.735928329498151 38.26768277443097 36.08922400048263 12.907164895588247 6 28.80842906924299 39.02686386971298 19.22931694978066 12.93539011126337 7 25.53135045806724 33.30694850226807 24.02400364270468 17.137697396960007 8 24.12075802340791 36.898393657582346 21.59107170591177 17.38977661309798 9 25.531552356059954 16.871269518621908 21.63009927840777 35.96707884691037 10-11 23.627953121013437 27.073327553030445 29.64032247841768 19.658396847538437 12-13 24.645640740110984 24.820499690366567 29.562537065788263 20.971322503734186 14-15 21.89262067435001 26.06767236704796 27.23648574401934 24.803221214582692 16-17 21.20528044123829 29.247182278107697 27.839947426315703 21.707589854338305 18-19 21.274912655724716 28.480679581867868 29.62065961771859 20.623748144688822 20-21 22.19438433367784 27.461302472030834 29.459601913904464 20.88471128038686 22-23 22.05812162386867 27.431375714372418 29.16040567626418 21.350096985494734 24-25 21.73607717447234 27.588999136096596 29.2860064488083 21.38891724062276 26-27 21.681327059940124 27.698532307557265 29.18004263869739 21.440097993805217 28-29 21.63128741670325 27.812159101154364 29.159664430265753 21.396889051876634 30-31 21.760877602098823 27.661389738558057 29.19175560905396 21.385977050289156 32-33 21.637601977592645 27.739813932858986 29.112623010976442 21.50996107857193 34-35 21.776633247493564 27.714243423329215 29.06413180263882 21.444991526538402 36-37 21.769970204867423 27.722552492077096 29.026734419318263 21.480742883737218 38-39 21.70864018494542 27.850399865026006 29.024290068064612 21.416669881963962 40-41 21.795973731522814 27.762242410406905 28.8677563885703 21.574027469499978 42-43 21.798101417771964 27.891657537314025 28.719704016485874 21.59053702842814 44-45 21.864775511062717 27.87621418642226 28.5431568725972 21.71585342991782 46-47 21.85927518474852 27.848996102139395 28.3118141882577 21.979914524854383 48-49 21.807725723980454 28.198185462540504 28.166697072248358 21.827391741230684 50-51 21.80508759717154 28.123844248978138 28.171615091990788 21.899453061859536 52-53 21.875835280918984 28.07458908267994 27.843880764460643 22.20569487194043 54-55 21.88451656368334 27.84123297692022 28.028363710463545 22.245886748932893 56-57 21.948411306053227 27.5686899469752 28.24250518087503 22.240393566096543 58-59 21.702185289172284 27.526216413627363 28.40566329305077 22.365935004149584 60-61 21.85679547738983 27.270186830868237 28.613260039765226 22.259757651976702 62-63 21.700346017548398 27.76119731210265 28.517808016337913 22.02064865401104 64-65 21.32333069054165 27.901579690029227 28.429998344516637 22.345091274912484 66-67 21.436220768738952 28.42519835931875 27.955999957193562 22.182580914748733 68-69 21.40709506917268 28.646359884571087 27.660826910728016 22.285718135528217 70-71 21.429707146468218 28.319686721253113 27.63747295467439 22.613133177604276 72-73 21.383065800613814 27.964985018499583 27.588377970761247 23.063571210125353 74-75 21.74551251377675 27.69677311008547 27.646780946961076 22.910933429176705 76-77 22.111970183955275 27.58036008683632 27.49979133442383 22.80787839478458 78-79 22.21373594924552 27.441746265205563 26.983725902917993 23.360791882630924 80-81 22.17212223691394 27.753758521595923 26.900892866090665 23.173226375399476 82-83 22.04257575101203 27.91170989573289 27.008369551762947 23.03734480149214 84-85 22.160222837949746 27.89399630194145 26.955115745480672 22.990665114628133 86-87 22.40128591856545 28.121768075845743 26.858229388027215 22.618716617561592 88-89 22.587282609686 27.81917179789415 27.138358274917714 22.455187317502144 90-91 22.30666679214151 27.92653105687746 27.33203124665816 22.434770904322864 92-93 22.178039323860375 27.426260089814885 27.28085720535795 23.11484338096679 94-95 21.967028059824727 27.466056540255853 27.867998084793378 22.698917315126042 96-97 21.60915531408352 27.673445704502203 28.107558065796518 22.60984091561776 98-99 21.941408977848635 27.855637523691527 28.33523348106899 21.867720017390845 100-101 22.578483989194297 30.74630519054863 25.543108824523465 21.13210199573361 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2688.0 1 2374.0 2 3120.5 3 4395.5 4 5830.0 5 8787.5 6 11183.0 7 13546.0 8 15667.0 9 16143.0 10 15030.5 11 13722.0 12 14945.5 13 19787.0 14 31453.5 15 47326.0 16 60014.0 17 66848.5 18 67565.0 19 63555.5 20 57616.0 21 52268.0 22 49986.0 23 54538.5 24 65123.5 25 80892.5 26 101457.0 27 123428.5 28 147400.5 29 174526.0 30 200151.5 31 226090.5 32 254523.5 33 282532.5 34 307283.0 35 326937.0 36 349672.0 37 371636.5 38 384948.0 39 393519.0 40 405823.5 41 419812.5 42 426139.5 43 433523.5 44 444760.5 45 450985.5 46 454191.5 47 453103.0 48 447324.5 49 441386.0 50 430593.5 51 413136.0 52 391582.0 53 368937.5 54 345503.0 55 318676.0 56 289775.5 57 258141.5 58 227460.5 59 197467.5 60 165009.5 61 134103.0 62 105156.5 63 79718.0 64 59312.5 65 44665.0 66 34532.5 67 26226.5 68 19667.5 69 14083.5 70 9922.5 71 7346.0 72 5278.0 73 3678.0 74 2505.0 75 1728.5 76 1145.5 77 671.5 78 392.5 79 256.0 80 187.5 81 133.0 82 93.0 83 62.0 84 41.0 85 32.0 86 25.0 87 17.5 88 12.0 89 8.0 90 5.0 91 3.5 92 4.0 93 4.0 94 2.5 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.7954968579702735E-5 2 0.0019930015123470037 3 1.7954968579702735E-5 4 2.69324528695541E-5 5 1.7954968579702735E-5 6 1.7954968579702735E-5 7 1.7954968579702735E-5 8 7.181987431881094E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 6.643338374490011E-4 16-17 0.00292217113634662 18-19 9.875232718836503E-5 20-21 8.977710768144604E-6 22-23 0.001144742549869587 24-25 0.005895515833837872 26-27 0.010411745922676302 28-29 0.3656376876394447 30-31 0.334022139099299 32-33 0.33738216879070687 34-35 0.1916030973302506 36-37 0.0479476712651735 38-39 0.038573248961178724 40-41 0.023643555820308793 42-43 0.030848638903599224 44-45 0.01899445177740513 46-47 0.013751228484577507 48-49 0.009146920020071064 50-51 0.005149289225965728 52-53 0.003482921944447972 54-55 6.407060908700442E-4 56-57 0.0023249603888491426 58-59 0.0044481124065534165 60-61 0.0034348518576008285 62-63 0.0025704477382772067 64-65 2.8100740464371144E-4 66-67 7.963982490985394E-5 68-69 7.74266284655078E-4 70-71 0.0011023236219976857 72-73 0.0019296491985001905 74-75 0.002244982438326755 76-77 0.0010479015169579545 78-79 1.1124315497029649E-4 80-81 0.003558325809850035 82-83 0.0015452042174424387 84-85 6.582318280430785E-5 86-87 1.6655822800699924E-5 88-89 0.0015353796175487477 90-91 0.0037641036257728177 92-93 0.015816257236719235 94-95 0.0017652446973373227 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 170.0 20-21 621.0 22-23 1426.0 24-25 4051.0 26-27 4671.0 28-29 8003.0 30-31 21785.0 32-33 28402.0 34-35 41292.0 36-37 56907.0 38-39 44501.0 40-41 72082.0 42-43 85109.0 44-45 101176.0 46-47 101083.0 48-49 89400.0 50-51 81002.0 52-53 14701.0 54-55 13536.0 56-57 13065.0 58-59 13206.0 60-61 89145.0 62-63 88581.0 64-65 94703.0 66-67 100162.0 68-69 101842.0 70-71 101227.0 72-73 98411.0 74-75 100775.0 76-77 102194.0 78-79 108159.0 80-81 108944.0 82-83 106829.0 84-85 108124.0 86-87 113585.0 88-89 121378.0 90-91 129463.0 92-93 134785.0 94-95 151461.0 96-97 221100.0 98-99 1032118.0 100-101 7129803.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.6528162519938 #Duplication Level Percentage of deduplicated Percentage of total 1 88.09673527325288 72.8144327294071 2 8.02687477985937 13.268876125149593 3 2.126207548109773 5.27211125362558 4 0.7907741478818894 2.614388413668351 5 0.3700747993035682 1.5293862193165653 6 0.1917155977154336 0.9507500442368937 7 0.11039766805882428 0.6387274720900226 8 0.079902756438723 0.5283350276766069 9 0.05254159042528876 0.39084393771080184 >10 0.15320740615927525 1.8618925486202313 >50 0.0012639130547223744 0.06843809507395993 >100 2.6720435306601127E-4 0.0429429377587464 >500 3.731538726299372E-5 0.018875195665600912 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.977484289851367E-6 2 0.0 1.7954968579702735E-5 0.0 0.0 1.7954968579702735E-5 3 0.0 1.7954968579702735E-5 0.0 1.7954968579702735E-5 1.7954968579702735E-5 4 0.0 4.488742144925683E-5 0.0 3.590993715940547E-5 1.7954968579702735E-5 5 0.0 4.488742144925683E-5 0.0 3.590993715940547E-5 1.7954968579702735E-5 6 0.0 4.488742144925683E-5 0.0 3.590993715940547E-5 2.6932452869554102E-5 7 0.0 5.3864905739108204E-5 0.0 3.590993715940547E-5 2.6932452869554102E-5 8 0.0 5.3864905739108204E-5 0.0 7.181987431881094E-5 4.488742144925683E-5 9 0.0 1.7057220150717598E-4 0.0 9.875232718836503E-5 5.3864905739108204E-5 10-11 0.0 1.7057220150717598E-4 0.0 1.2568478005791915E-4 6.284239002895957E-5 12-13 0.0 1.7057220150717598E-4 0.0 1.4812849078254755E-4 6.284239002895957E-5 14-15 0.0 2.0648213866658144E-4 0.0 1.571059750723989E-4 6.733113217388526E-5 16-17 0.0 2.0648213866658144E-4 0.0 1.7954968579702733E-4 7.181987431881094E-5 18-19 0.0 2.244371072462842E-4 0.0 2.3790333368106122E-4 8.07973586086623E-5 20-21 0.0 2.513695601158383E-4 0.0 3.366556608694263E-4 8.977484289851367E-5 22-23 8.977484289851367E-6 2.827907551303181E-4 0.0 6.822888060287039E-4 1.0324106933329072E-4 24-25 1.7954968579702735E-5 3.007457237100208E-4 0.0 0.0015127061028399552 1.1670729576806777E-4 26-27 2.6932452869554102E-5 3.1421195014479786E-4 0.0 0.0036538361059695063 1.1670729576806777E-4 28-29 3.142119501447979E-5 3.1870069228972353E-4 0.0 0.017609335434543457 1.1670729576806777E-4 30-31 4.039867930433115E-5 3.6807685588390607E-4 0.0 0.025500544125322808 1.1670729576806777E-4 32-33 4.488742144925683E-5 3.6807685588390607E-4 0.0 0.02993991010665431 1.346622643477705E-4 34-35 4.488742144925683E-5 4.488742144925684E-4 0.0 0.03583811728508665 1.4363974863762188E-4 36-37 4.488742144925683E-5 5.38649057391082E-4 0.0 0.04341511402572121 1.4363974863762188E-4 38-39 4.488742144925683E-5 5.476265416809333E-4 0.0 0.0624114707830467 1.615947172173246E-4 40-41 4.488742144925683E-5 5.835364788403389E-4 0.0 0.2960280557157039 1.7057220150717598E-4 42-43 4.488742144925683E-5 5.835364788403389E-4 0.0 0.3149481038565657 1.84038427941953E-4 44-45 4.488742144925683E-5 6.104689317098929E-4 0.0 0.3470560764192191 2.109708808115071E-4 46-47 4.488742144925683E-5 6.374013845794471E-4 0.0 0.38503083496529034 2.2443710724628417E-4 48-49 4.488742144925683E-5 6.374013845794471E-4 0.0 0.41811286457339264 2.2443710724628417E-4 50-51 4.488742144925683E-5 7.047325167533323E-4 0.0 0.4493141112227711 2.3341459153613554E-4 52-53 4.488742144925683E-5 7.09221258898258E-4 0.0 0.6176778515946436 2.558583022607639E-4 54-55 4.488742144925683E-5 7.137100010431837E-4 0.0 1.2341751640051717 2.7830201298539235E-4 56-57 4.488742144925683E-5 7.316649696228865E-4 0.0 1.9107453125412404 2.827907551303181E-4 58-59 4.488742144925683E-5 7.451311960576635E-4 0.0 2.6145127497334135 2.8727949727524375E-4 60-61 4.488742144925683E-5 7.541086803475148E-4 0.0 3.1460920382462376 2.962569815650951E-4 62-63 4.488742144925683E-5 7.585974224924405E-4 0.0 3.156389212726697 3.1421195014479786E-4 64-65 4.488742144925683E-5 9.022371711300623E-4 0.0 3.162996641164028 3.1870069228972353E-4 66-67 4.488742144925683E-5 9.06725913274988E-4 0.0 3.1691955940661702 3.276781765795749E-4 68-69 4.488742144925683E-5 9.246808818546908E-4 0.0 3.174559640929356 3.4114440301435196E-4 70-71 4.488742144925683E-5 9.381471082894678E-4 0.0 3.1795017460309194 3.5909937159405467E-4 72-73 4.488742144925683E-5 9.516133347242449E-4 0.0 3.1835595689299323 4.3091924591286563E-4 74-75 4.488742144925683E-5 9.92012014028576E-4 0.0 3.187069765287264 4.3091924591286563E-4 76-77 4.488742144925683E-5 0.0010638318883473869 0.0 3.190395923216654 4.3091924591286563E-4 78-79 4.488742144925683E-5 0.001077298114782164 0.0 3.1929589949814066 4.3091924591286563E-4 80-81 4.488742144925683E-5 0.001077298114782164 0.0 3.1940632255490584 4.5336295663749406E-4 82-83 4.488742144925683E-5 0.001077298114782164 0.0 3.1944941447949713 5.027391202316766E-4 84-85 4.488742144925683E-5 0.001077298114782164 0.0 3.194763469323667 5.11716604521528E-4 86-87 4.488742144925683E-5 0.001104230567651718 0.0 3.194830800455841 5.162053466664536E-4 88-89 4.488742144925683E-5 0.0011850279262603804 0.0 3.194880176619435 5.296715731012306E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14750 0.0 50.75234 1 TATCTCG 11255 0.0 37.347397 94-95 GTATCAA 27540 0.0 36.762 1 TCAACGC 32485 0.0 30.378574 4 ATCAACG 32740 0.0 30.08904 3 CAACGCA 33200 0.0 29.685192 5 TATCAAC 34180 0.0 29.176928 2 AACGCAG 34015 0.0 29.088558 6 TATGCCG 4590 0.0 28.540709 88-89 CCGTCTT 5185 0.0 26.080133 92-93 CTCGTAT 5005 0.0 25.756874 84-85 CGTATGC 5145 0.0 25.275904 86-87 CGCAGAG 39640 0.0 24.960829 8 ACGCAGA 39630 0.0 24.956196 7 TGCCGTC 5330 0.0 24.818604 90-91 GCCGTCT 5295 0.0 24.382637 90-91 GCTATCT 17810 0.0 24.27754 94-95 TCTCGTA 5150 0.0 24.103264 82-83 ATCTCGT 8650 0.0 23.90487 94-95 TCGTATG 5280 0.0 23.738613 84-85 >>END_MODULE