##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139036_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8400129 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.71265726990621 34.0 31.0 34.0 31.0 34.0 2 32.81878361629923 34.0 31.0 34.0 31.0 34.0 3 32.884984742496215 34.0 31.0 34.0 31.0 34.0 4 36.32929339537524 37.0 37.0 37.0 35.0 37.0 5 36.27534458101774 37.0 37.0 37.0 35.0 37.0 6 36.31339578237429 37.0 37.0 37.0 35.0 37.0 7 36.264851527875344 37.0 37.0 37.0 35.0 37.0 8 36.24535313683873 37.0 37.0 37.0 35.0 37.0 9 37.98707817463279 39.0 38.0 39.0 35.0 39.0 10-11 37.94589368806122 39.0 38.0 39.0 35.0 39.0 12-13 37.92183387897971 39.0 38.0 39.0 35.0 39.0 14-15 39.336075493602536 41.0 39.0 41.0 36.0 41.0 16-17 39.31116611423467 41.0 39.0 41.0 36.0 41.0 18-19 39.32726056945077 41.0 39.0 41.0 36.0 41.0 20-21 39.32345963437129 41.0 39.0 41.0 36.0 41.0 22-23 39.19311253553035 40.5 39.0 41.0 36.0 41.0 24-25 39.14241392716313 40.5 39.0 41.0 36.0 41.0 26-27 39.0923070699174 40.0 39.0 41.0 35.5 41.0 28-29 38.90185557879418 40.0 39.0 41.0 35.0 41.0 30-31 38.78956591209466 40.0 38.0 41.0 35.0 41.0 32-33 38.67429299300756 40.0 38.0 41.0 35.0 41.0 34-35 38.3964931935042 40.0 38.0 41.0 34.0 41.0 36-37 38.64352228013695 40.0 38.0 41.0 35.0 41.0 38-39 38.746287919574115 40.0 38.0 41.0 35.0 41.0 40-41 38.73373906216352 40.0 38.0 41.0 35.0 41.0 42-43 38.67644478343568 40.0 38.0 41.0 35.0 41.0 44-45 38.62536131359844 40.0 38.0 41.0 35.0 41.0 46-47 38.55425116903456 40.0 38.0 41.0 34.0 41.0 48-49 38.4909209802479 40.0 38.0 41.0 34.0 41.0 50-51 38.41638007085786 40.0 38.0 41.0 34.0 41.0 52-53 38.30563820457309 40.0 38.0 41.0 34.0 41.0 54-55 38.167868046053755 40.0 37.0 41.0 34.0 41.0 56-57 38.029787343447765 40.0 37.0 41.0 33.5 41.0 58-59 37.863875885421294 40.0 36.5 41.0 33.0 41.0 60-61 37.66744278508521 39.0 36.0 41.0 33.0 41.0 62-63 37.4328145704759 39.0 35.5 40.5 33.0 41.0 64-65 37.157023969353105 39.0 35.0 40.0 32.5 41.0 66-67 36.87770735311782 38.0 35.0 40.0 32.0 41.0 68-69 36.59638288093595 37.5 35.0 40.0 32.0 41.0 70-71 36.28809710147373 37.0 35.0 39.5 31.5 41.0 72-73 35.98463082273882 36.5 35.0 39.0 31.0 40.5 74-75 35.65575403589354 36.0 34.5 39.0 31.0 40.0 76-77 34.593528954028855 35.0 33.5 37.0 29.5 39.0 78-79 34.841610512463234 35.0 34.0 37.0 31.0 39.0 80-81 34.619682235713526 35.0 34.0 37.0 30.5 39.0 82-83 34.37549418540311 35.0 34.0 36.0 30.0 38.5 84-85 34.133066752171544 35.0 34.0 36.0 30.0 37.0 86-87 33.903970462784564 35.0 34.0 35.5 30.0 37.0 88-89 33.712600828067856 35.0 33.5 35.0 30.0 36.5 90-91 33.56627081860133 35.0 33.0 35.0 30.0 36.0 92-93 33.45587904831446 35.0 33.0 35.0 30.0 36.0 94-95 33.38060142663924 35.0 33.0 35.0 30.0 35.5 96-97 33.32041375561903 34.5 33.0 35.0 30.0 35.0 98-99 33.32394800003701 34.0 33.0 35.0 30.0 35.0 100-101 32.27592774311745 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 2.0 20 44.0 21 230.0 22 1031.0 23 3462.0 24 8758.0 25 18126.0 26 31804.0 27 49236.0 28 70482.0 29 94740.0 30 121722.0 31 153551.0 32 193840.0 33 252522.0 34 358582.0 35 523659.0 36 909534.0 37 1888474.0 38 2594233.0 39 1078495.0 40 47600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.27035397555847 21.381638470270932 15.243315339956725 24.10469221421388 2 13.655886930328123 21.962100188464532 41.67667362421546 22.705339256991884 3 16.576785089082584 27.419716392383116 31.64480727493763 24.358691243596674 4 11.708596786691439 19.16811495826194 39.77054156443111 29.35274669061551 5 12.579405049471276 38.39077671087592 36.06659756453682 12.963220675115982 6 28.614674516230526 39.149050960777146 19.306017635209564 12.930256887782768 7 25.32923609369239 33.44483958397296 24.035600890319873 17.19032343201478 8 24.08312641173545 36.80312024039651 21.597757746851773 17.51599560101627 9 25.46224295629781 16.70642399734861 21.74268058772438 36.0886524586292 10-11 23.55312183617191 27.09966282063423 29.606975655193846 19.74023968800001 12-13 24.582866525025985 24.942533620614636 29.531451243189245 20.943148611170137 14-15 21.807194255909454 26.101053960639526 27.391857681296116 24.699894102154904 16-17 21.043336675434222 29.1823741837111 27.98903344870764 21.785255692147032 18-19 21.082773688617102 28.349901150233432 29.849641451593378 20.71768370955609 20-21 22.02447648186288 27.443808854867317 29.741657638781415 20.790057024488387 22-23 21.79559058253049 27.45294920392794 29.449237145727515 21.302223067814058 24-25 21.465304921335306 27.604162883059352 29.61657950624803 21.313952689357315 26-27 21.421966872924077 27.710766722618313 29.549641469045838 21.317624935411768 28-29 21.373126243872377 27.792880393622614 29.54354571618638 21.29044764631863 30-31 21.629082598352895 27.647270446064386 29.47867968101829 21.24496727456443 32-33 21.44067452427035 27.80065184543864 29.39434309405758 21.364330536233428 34-35 21.59578154880025 27.85549246306879 29.316608790719144 21.232117197411817 36-37 21.54631535571674 27.808012312786172 29.31957504161512 21.326097289881965 38-39 21.467216934115147 27.926123504785956 29.307734303471566 21.298925257627328 40-41 21.56346122567993 27.740174113830967 29.238827458539614 21.457537201949496 42-43 21.610569432768756 27.842610019296448 28.997724681287444 21.549095866647345 44-45 21.59868782728359 27.979457150541997 28.76686957999457 21.65498544217984 46-47 21.697440494372692 27.950367415200784 28.43874327791655 21.913448812509976 48-49 21.67611856579617 28.18868333016109 28.377397678749837 21.757800425292906 50-51 21.68027621536324 28.285585993090546 28.21891906361354 21.815218727932674 52-53 21.7552047661899 28.172684549604472 27.99236944830912 22.079741235896506 54-55 21.769133968007644 27.952046516721836 28.098202708840038 22.18061680643049 56-57 21.807358512012982 27.73956761307881 28.297886228622193 22.155187646286016 58-59 21.591746120677104 27.6212431227475 28.53295414903596 22.254056607539432 60-61 21.764054132141865 27.432683080352078 28.643259021163747 22.160003766342314 62-63 21.538164489803595 27.882802054185547 28.674514792960615 21.904518663050247 64-65 21.20769610637075 27.986676089920316 28.52913888281412 22.276488920894813 66-67 21.28260524244525 28.536940132908388 28.047799782941524 22.132654841704834 68-69 21.29411710363617 28.75140773540017 27.75556485175826 22.198910309205402 70-71 21.300425652337303 28.410460555666628 27.733354634437607 22.555759157558462 72-73 21.252992692360962 28.09901284113481 27.69455737397553 22.953437092528695 74-75 21.596523458791584 27.83084819480249 27.71968871480384 22.852939631602094 76-77 21.932832407518532 27.66804223799181 27.598718575708013 22.800406778781646 78-79 22.06812258320894 27.550730850444026 27.097613583805373 23.28353298254166 80-81 22.03848382816727 27.885586669030708 26.997852044514413 23.07807745828761 82-83 21.994846159676452 27.931829921971236 27.15347498401369 22.91984893433862 84-85 22.050367497493035 27.96632615791855 27.044903489371535 22.93840285521688 86-87 22.24000222030586 28.255082437343717 26.98483570954531 22.520079632805107 88-89 22.44316984088303 27.889685578408052 27.270515294993565 22.396629285715353 90-91 22.203650280742735 27.96181859421669 27.492144500718542 22.34238662432203 92-93 22.07248829370676 27.448549190353017 27.43327334011081 23.04568917582942 94-95 21.858273522572556 27.48823561726604 28.003767165597825 22.64972369456358 96-97 21.509757762331276 27.742586906469953 28.198279481735167 22.54937584946361 98-99 21.8106882461076 27.939151803487373 28.445993873464953 21.804166076940078 100-101 22.442328627464533 30.84724786302433 25.758184442845156 20.95223906666598 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2195.0 1 2012.0 2 2771.5 3 3933.5 4 5377.0 5 8152.5 6 10284.5 7 12159.5 8 13684.5 9 13732.0 10 12525.5 11 11464.5 12 12823.5 13 17274.5 14 27728.0 15 42254.0 16 53562.0 17 58917.5 18 58849.5 19 54968.0 20 49294.0 21 43934.0 22 41123.0 23 43378.5 24 50190.5 25 61112.5 26 75470.0 27 91937.5 28 111289.5 29 132103.5 30 151856.5 31 171229.5 32 192306.0 33 213643.0 34 231888.5 35 248296.5 36 267170.0 37 286001.5 38 298559.0 39 305505.0 40 312866.5 41 320505.0 42 325621.5 43 331474.5 44 335299.5 45 338092.5 46 340446.5 47 339800.0 48 336916.0 49 328769.5 50 318704.5 51 307875.5 52 291954.5 53 273257.0 54 255447.0 55 236062.0 56 214467.5 57 190536.5 58 166660.5 59 143536.0 60 118738.0 61 95624.0 62 74493.0 63 56181.0 64 41981.5 65 31016.5 66 23429.0 67 17807.0 68 13386.0 69 9673.0 70 6739.0 71 4733.5 72 3269.5 73 2245.5 74 1550.5 75 1042.5 76 660.0 77 398.0 78 263.0 79 172.0 80 111.0 81 77.0 82 59.0 83 42.0 84 26.5 85 20.0 86 17.5 87 13.0 88 6.5 89 4.5 90 5.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.190457908444025E-5 2 0.001666641071821635 3 2.38091581688805E-5 4 2.38091581688805E-5 5 2.38091581688805E-5 6 2.38091581688805E-5 7 2.38091581688805E-5 8 8.333205359108176E-5 9 1.190457908444025E-5 10-11 5.952289542220125E-6 12-13 0.0 14-15 6.249904019331132E-4 16-17 0.0026547211358301757 18-19 9.5236632675522E-5 20-21 0.0 22-23 0.001101294509189648 24-25 0.00600180554316757 26-27 0.01083451819123943 28-29 0.3689973570514393 30-31 0.3381627295084745 32-33 0.34072728664114194 34-35 0.1941829546200036 36-37 0.050057082056336744 38-39 0.03978786508273532 40-41 0.02557391509326358 42-43 0.03304261185763505 44-45 0.021520380919394927 46-47 0.016119661579504584 48-49 0.01093721258297625 50-51 0.006554992733240597 52-53 0.005054530708577385 54-55 8.202674238418546E-4 56-57 0.003497873293037833 58-59 0.005964841757183248 60-61 0.00501723853512628 62-63 0.0038770952984169675 64-65 6.628962963065059E-4 66-67 5.301541403282224E-5 68-69 7.765370664237088E-4 70-71 0.0010010156250422728 72-73 0.0017765031898822948 74-75 0.002015393603955141 76-77 9.065480734423883E-4 78-79 1.1277347037941366E-4 80-81 0.003165262865456866 82-83 0.0013052821233896894 84-85 5.835663769186659E-5 86-87 3.69066662887424E-5 88-89 0.0015622910482442204 90-91 0.003842061709421918 92-93 0.015811773449586782 94-95 0.00169569588624178 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 134.0 20-21 550.0 22-23 1188.0 24-25 2964.0 26-27 3807.0 28-29 6435.0 30-31 16825.0 32-33 22609.0 34-35 32680.0 36-37 44313.0 38-39 35921.0 40-41 56441.0 42-43 66709.0 44-45 79957.0 46-47 80018.0 48-49 69517.0 50-51 62024.0 52-53 12764.0 54-55 11895.0 56-57 11609.0 58-59 11624.0 60-61 67409.0 62-63 67265.0 64-65 71572.0 66-67 75944.0 68-69 76256.0 70-71 75820.0 72-73 73524.0 74-75 73976.0 76-77 74680.0 78-79 79883.0 80-81 80614.0 82-83 79136.0 84-85 79659.0 86-87 83769.0 88-89 88984.0 90-91 96182.0 92-93 99453.0 94-95 111314.0 96-97 163863.0 98-99 769674.0 100-101 5381168.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.16473293011748 #Duplication Level Percentage of deduplicated Percentage of total 1 87.7949863414513 72.13651605348659 2 8.078204697308065 13.274870630182752 3 2.2531023108063875 5.553766488949121 4 0.8610172821624169 2.8298102014836237 5 0.4054438427036175 1.6656592526951646 6 0.21082923228792771 1.039363653887957 7 0.13310601256369278 0.7655633981582076 8 0.07103867798013858 0.4669499203157363 9 0.04837998758379626 0.3577615883086518 >10 0.14146383205297697 1.7243252661668147 >50 0.0020698091839996768 0.1167682048043242 >100 3.087905995269237E-4 0.04486328275975847 >500 4.918331614665629E-5 0.02378205880123848 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.38091581688805E-5 0.0 0.0 0.0 3 0.0 2.38091581688805E-5 0.0 0.0 0.0 4 0.0 8.333205359108176E-5 0.0 1.190457908444025E-5 0.0 5 0.0 8.333205359108176E-5 0.0 1.190457908444025E-5 0.0 6 0.0 8.333205359108176E-5 0.0 1.190457908444025E-5 0.0 7 0.0 8.333205359108176E-5 0.0 1.190457908444025E-5 0.0 8 0.0 9.5236632675522E-5 0.0 1.190457908444025E-5 0.0 9 0.0 1.90473265351044E-4 0.0 1.190457908444025E-5 0.0 10-11 0.0 1.90473265351044E-4 0.0 2.9761447711100627E-5 0.0 12-13 0.0 1.90473265351044E-4 0.0 4.7618316337761E-5 0.0 14-15 0.0 3.511850829909874E-4 0.0 6.547518496442138E-5 0.0 16-17 0.0 3.630896620754276E-4 0.0 8.333205359108176E-5 0.0 18-19 0.0 4.1666026795540874E-4 0.0 8.333205359108176E-5 0.0 20-21 0.0 4.6427858429316977E-4 0.0 1.0714121175996226E-4 0.0 22-23 0.0 5.476106378842515E-4 0.0 3.4523279344876725E-4 0.0 24-25 0.0 5.833243751375723E-4 0.0 0.0011487918816484842 0.0 26-27 0.0 6.071335333064528E-4 0.0 0.0033987573286076915 0.0 28-29 0.0 6.071335333064528E-4 0.0 0.017779488862611513 0.0 30-31 0.0 7.261793241508553E-4 0.0 0.025928173245910867 0.0 32-33 0.0 7.261793241508553E-4 0.0 0.030487627035251482 0.0 34-35 0.0 8.03559088199717E-4 0.0 0.03647563031472493 0.0 36-37 0.0 8.809388522485785E-4 0.0 0.04418384527189999 0.0 38-39 0.0 8.928434313330188E-4 0.0 0.06402877860566189 0.0 40-41 0.0 9.99984643092981E-4 0.0 0.3003287211422586 0.0 42-43 0.0 0.0010535552489729623 0.0 0.319834373972114 0.0 44-45 0.0 0.001184505618901805 0.0 0.3519886420791871 0.0 46-47 0.0 0.0012618853829506665 0.0 0.38984520356770713 0.0 48-49 0.0 0.0012678376724928866 0.0 0.4230232654760421 0.0 50-51 0.0 0.0014583109378439308 0.0 0.4551061061086086 0.0 52-53 0.0 0.0014642632273861509 0.0 0.6195202478438129 0.0 54-55 0.0 0.001470215516928371 0.0 1.2216240964870897 0.0 56-57 0.0 0.001476167806470591 0.0 1.8834948844237989 0.0 58-59 0.0 0.0014940246750972516 0.0 2.5743116564043245 0.0 60-61 0.0 0.0015118815437239119 0.0 3.096309592388403 0.0 62-63 0.0 0.0015297384123505722 0.0 3.106755860534999 0.0 64-65 0.0 0.001761877704497157 0.0 3.1142140793314006 0.0 66-67 0.0 0.0017916391522082578 0.0 3.1207794546964696 0.0 68-69 0.0 0.0018333051790037987 0.0 3.1269162652144984 0.0 70-71 0.0 0.0018749712057993394 0.0 3.1322197551966164 0.0 72-73 0.0 0.00189878036396822 0.0 3.136231598348073 0.0 74-75 0.0 0.001946398680305981 0.0 3.1394577392799565 0.0 76-77 5.952289542220125E-6 0.0020833013397770443 0.0 3.142671975632755 0.0 78-79 1.190457908444025E-5 0.0021428242351992453 0.0 3.1457552616156255 0.0 80-81 1.190457908444025E-5 0.0021487765247414654 0.0 3.1470766698939983 0.0 82-83 1.190457908444025E-5 0.0021547288142836855 0.0 3.147558805346918 0.0 84-85 1.190457908444025E-5 0.002196394841079226 0.0 3.147951656456704 0.0 86-87 1.190457908444025E-5 0.0022321085783325472 0.0 3.14804689308938 0.0 88-89 1.190457908444025E-5 0.0023452020796347296 0.0 3.1480826068266334 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11575 0.0 51.639465 1 GTATCAA 21445 0.0 38.66712 1 TATCTCG 9320 0.0 32.026634 94-95 ATCAACG 27565 0.0 29.517828 3 TCAACGC 27725 0.0 29.316326 4 CAACGCA 27970 0.0 29.02865 5 TATCAAC 28515 0.0 28.85282 2 AACGCAG 28705 0.0 28.360592 6 ACGCAGA 32630 0.0 24.92268 7 CCGTCTT 4445 0.0 24.649258 92-93 TATGCCG 4280 0.0 24.566923 88-89 CGCAGAG 33590 0.0 24.197535 8 TGCCGTC 4620 0.0 23.114351 90-91 GCCGTCT 4530 0.0 22.870844 90-91 ATGCCGT 4485 0.0 22.810396 88-89 CTCGTAT 4625 0.0 22.451494 84-85 GCTATCT 14450 0.0 22.280693 94-95 TCGTATG 4715 0.0 21.438778 84-85 CGTATGC 4950 0.0 21.359325 86-87 ATCTCGT 7495 0.0 21.182535 94-95 >>END_MODULE