##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139033_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6632459 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.64490319502917 34.0 31.0 34.0 31.0 34.0 2 32.756323710406654 34.0 31.0 34.0 31.0 34.0 3 32.82564400322716 34.0 31.0 34.0 31.0 34.0 4 36.2916423606991 37.0 37.0 37.0 35.0 37.0 5 36.22992196408602 37.0 37.0 37.0 35.0 37.0 6 36.26943053850766 37.0 37.0 37.0 35.0 37.0 7 36.21767733505778 37.0 37.0 37.0 35.0 37.0 8 36.19774174254225 37.0 37.0 37.0 35.0 37.0 9 37.92701937546843 39.0 38.0 39.0 35.0 39.0 10-11 37.88244518360385 39.0 38.0 39.0 35.0 39.0 12-13 37.85824164159929 39.0 38.0 39.0 35.0 39.0 14-15 39.25568948108085 41.0 39.0 41.0 36.0 41.0 16-17 39.22699868932473 41.0 39.0 41.0 36.0 41.0 18-19 39.239153758809515 41.0 39.0 41.0 36.0 41.0 20-21 39.23262205551954 40.5 39.0 41.0 36.0 41.0 22-23 39.098847280266014 40.0 39.0 41.0 35.5 41.0 24-25 39.04931406115114 40.0 39.0 41.0 35.0 41.0 26-27 38.999906897655016 40.0 38.5 41.0 35.0 41.0 28-29 38.812080446132775 40.0 38.0 41.0 35.0 41.0 30-31 38.70469378317074 40.0 38.0 41.0 35.0 41.0 32-33 38.59251081122558 40.0 38.0 41.0 35.0 41.0 34-35 38.312017345831 40.0 38.0 41.0 34.0 41.0 36-37 38.56170396311329 40.0 38.0 41.0 34.5 41.0 38-39 38.66220254917313 40.0 38.0 41.0 35.0 41.0 40-41 38.64601971212082 40.0 38.0 41.0 35.0 41.0 42-43 38.587426206531404 40.0 38.0 41.0 34.5 41.0 44-45 38.53601960729401 40.0 38.0 41.0 34.0 41.0 46-47 38.46380872348102 40.0 38.0 41.0 34.0 41.0 48-49 38.39758210343892 40.0 38.0 41.0 34.0 41.0 50-51 38.32093055955728 40.0 38.0 41.0 34.0 41.0 52-53 38.20666506010476 40.0 37.5 41.0 33.5 41.0 54-55 38.061076119888156 40.0 37.0 41.0 33.0 41.0 56-57 37.92040244007535 40.0 37.0 41.0 33.0 41.0 58-59 37.74436315139755 39.5 36.0 41.0 33.0 41.0 60-61 37.54445931008738 39.0 36.0 41.0 33.0 41.0 62-63 37.305914755945565 39.0 35.5 40.5 32.5 41.0 64-65 37.01306571741867 38.5 35.0 40.0 32.0 41.0 66-67 36.724782891283276 38.0 35.0 40.0 32.0 41.0 68-69 36.43201062813338 37.0 35.0 40.0 31.0 41.0 70-71 36.12151794315923 37.0 35.0 39.5 31.0 41.0 72-73 35.817305473831574 36.0 34.5 39.0 31.0 40.5 74-75 35.5008116524038 36.0 34.0 39.0 31.0 40.0 76-77 34.45350859602755 35.0 33.5 37.0 29.5 39.0 78-79 34.73956682162955 35.0 34.0 37.0 30.0 39.0 80-81 34.539670563773676 35.0 34.0 37.0 30.0 39.0 82-83 34.309805222465364 35.0 34.0 36.0 30.0 38.5 84-85 34.065122713951226 35.0 34.0 36.0 30.0 37.0 86-87 33.8311454692667 35.0 34.0 35.5 30.0 37.0 88-89 33.64800243402891 35.0 33.0 35.0 30.0 36.5 90-91 33.49071330770519 35.0 33.0 35.0 30.0 36.0 92-93 33.37050582213732 35.0 33.0 35.0 30.0 36.0 94-95 33.30128550041778 34.5 33.0 35.0 30.0 35.5 96-97 33.26366563933844 34.0 33.0 35.0 30.0 35.0 98-99 33.28054252427375 34.0 33.0 35.0 30.0 35.0 100-101 32.2525204140357 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 5.0 20 29.0 21 179.0 22 870.0 23 3039.0 24 7554.0 25 15154.0 26 26416.0 27 41272.0 28 58732.0 29 78616.0 30 100511.0 31 126493.0 32 160353.0 33 208583.0 34 292743.0 35 426649.0 36 741918.0 37 1492148.0 38 1955139.0 39 860045.0 40 36010.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.07484388520155 21.375993428681582 15.284466892294397 24.264695793822472 2 13.680662512768901 22.18332183661084 41.29419170502049 22.84182394559977 3 16.741606203914145 27.270462926414307 31.475374589631777 24.512556280039767 4 11.928019457036976 19.143518263738983 39.276081465411245 29.652380813812794 5 12.822469011870258 38.13279509153392 35.936837302725884 13.107898593869935 6 28.925380465978 38.81902624652486 19.1696925680204 13.085900719476742 7 25.52718380920259 33.15440020058925 24.000992693660073 17.317423296548082 8 24.160299617562426 36.75455016279794 21.532780848117326 17.552369371522307 9 25.460180002620447 16.73058212647828 21.637389692118713 36.17184817878256 10-11 23.676128265549774 27.13470976601589 29.362352635726808 19.826809332707523 12-13 24.646139889152717 24.907038619239007 29.32439758198261 21.122423909625667 14-15 21.83407716752323 26.083110456983654 27.15581180880658 24.927000566686537 16-17 21.27432461324728 29.174616428693987 27.693676407217193 21.857382550841535 18-19 21.31688361502394 28.389039712902647 29.422872740617574 20.871203931455838 20-21 22.2682725502928 27.454321027303536 29.328070553575706 20.94933586882796 22-23 22.07685331223446 27.407063433164698 29.07975840341599 21.436324851184853 24-25 21.71600099517578 27.534340389483564 29.277474178107056 21.4721844372336 26-27 21.595862014956808 27.66334803694455 29.2105204191129 21.530269528985745 28-29 21.629210419151228 27.734613608598274 29.175074779177212 21.46110119307329 30-31 21.892637197119974 27.500660847068353 29.149947128444186 21.45675482736749 32-33 21.760769137208673 27.59776279116728 29.039142949761715 21.602325121862336 34-35 21.90990006199764 27.686324054330598 28.93889090036107 21.464884983310696 36-37 21.894890580661638 27.62603246318978 28.91147902790611 21.567597928242467 38-39 21.713614753390424 27.811634829225923 28.937132502569963 21.537617914813694 40-41 21.874803722539482 27.651213698797143 28.847929431935416 21.626053146727962 42-43 21.77744219443532 27.82390235612609 28.583432932117493 21.815222517321097 44-45 21.864294789068428 27.826622399685135 28.41401179590762 21.895071015338818 46-47 21.910118362458086 27.840786454236937 28.209512069776256 22.03958311352872 48-49 21.98703940761257 28.0408104529144 28.071093330951186 21.90105680852184 50-51 22.008857189800736 28.03693238155489 27.966376554579114 21.987833874065263 52-53 22.14769144371379 27.979538325283205 27.85241817762083 22.02035205338218 54-55 22.17231675712799 27.888909665791257 27.807061758278902 22.131711818801854 56-57 22.090005927224826 28.09590314078606 27.731307495997743 22.08278343599137 58-59 22.04575704221839 28.040023693009896 27.853055447097475 22.061163817674238 60-61 22.122900895745286 27.98556603232439 27.81367438050406 22.077858691426265 62-63 22.09016389976037 28.066833749630998 27.865023129684406 21.977979220924222 64-65 22.2029591088865 27.939557305268597 27.76215310503003 22.095330480814876 66-67 22.169840300000697 28.069583466494937 27.555433928165375 22.205142305338995 68-69 22.15222058497874 28.028226317497413 27.624096633886204 22.19545646363764 70-71 22.116670494560008 27.891021943724777 27.692531526462123 22.299776035253092 72-73 22.16994689714933 27.899535627791234 27.596107272202104 22.33441020285733 74-75 22.050529539822826 27.91680576249084 27.604111765342846 22.428552932343493 76-77 22.23428869161099 27.916140901114822 27.506973860748545 22.342596546525648 78-79 22.132846269610283 27.933437234063245 27.537029772439787 22.396686723886685 80-81 22.14059776368868 27.826510391029135 27.610037772480883 22.4228540728013 82-83 22.25890758940978 27.756537645188256 27.708976278204695 22.27557848719727 84-85 22.29049265808768 27.804897890060857 27.64730272593162 22.257306725919836 86-87 22.177552730599864 27.82873943968897 27.626437505953028 22.367270323758138 88-89 22.283992005585407 27.75976827037826 27.558504145284505 22.397735578751828 90-91 22.322976522113485 27.778263372436445 27.593591284292184 22.305168821157885 92-93 22.391570715108998 27.698691843054103 27.695689617692203 22.2140478241447 94-95 22.105801165135897 27.8048878065289 27.74604111593574 22.343269912399467 96-97 22.1348045009889 27.819381921460774 27.76030186392483 22.285511713625496 98-99 22.408439568891986 28.37543452619024 27.85499920852515 21.36112669639263 100-101 22.946704558177807 31.07376336684907 24.977698136844182 21.001833938128936 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1489.0 1 1376.5 2 1943.5 3 2739.0 4 3595.0 5 5404.0 6 6913.0 7 8400.5 8 9648.0 9 9791.5 10 9094.0 11 8387.5 12 9158.0 13 12239.0 14 19809.0 15 30206.5 16 38380.5 17 42386.0 18 42484.0 19 39953.5 20 36245.0 21 32833.5 22 31439.5 23 33755.5 24 39586.5 25 48861.5 26 61117.5 27 74632.0 28 90653.0 29 107873.0 30 122967.0 31 138512.0 32 154533.5 33 169079.0 34 182239.5 35 194290.0 36 209135.5 37 222495.5 38 232170.5 39 241071.5 40 248988.0 41 256220.5 42 259994.5 43 262350.0 44 265179.0 45 268671.5 46 272214.0 47 274887.0 48 273512.0 49 267109.5 50 258509.0 51 250263.0 52 236271.0 53 217863.0 54 203502.0 55 189598.0 56 174383.5 57 157558.5 58 139573.0 59 119569.5 60 99935.5 61 83363.5 62 66898.0 63 52928.5 64 42394.0 65 32319.0 66 24775.0 67 18567.5 68 12889.0 69 8968.5 70 6193.0 71 4431.0 72 3097.0 73 2201.5 74 1700.0 75 1224.5 76 754.5 77 403.0 78 313.0 79 261.0 80 166.5 81 86.0 82 52.0 83 28.0 84 15.0 85 9.5 86 7.0 87 5.0 88 5.0 89 6.5 90 6.5 91 6.0 92 4.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002020366805132154 3 1.5077364217404134E-5 4 0.0 5 0.0 6 0.0 7 0.0 8 6.0309456869616535E-5 9 0.0 10-11 0.0 12-13 7.538682108702067E-6 14-15 6.709427076744839E-4 16-17 0.0027893123802197645 18-19 7.538682108702067E-5 20-21 1.5077867763330249E-5 22-23 0.0011158513851824738 24-25 0.005444663479452164 26-27 0.010221846507545835 28-29 0.36281828111442993 30-31 0.3317715016054776 32-33 0.3350052933032105 34-35 0.1889219836269133 36-37 0.04676254933590013 38-39 0.03717983762478421 40-41 0.02225589964556419 42-43 0.02931738728478346 44-45 0.018061214431356963 46-47 0.0135564623093944 48-49 0.008381022871483845 50-51 0.004351129371887885 52-53 0.003231694904615875 54-55 4.5807133970325153E-4 56-57 0.0026300389361187454 58-59 0.004872061818316658 60-61 0.003849111153021791 62-63 0.0031295357122315785 64-65 3.8399030091698595E-4 66-67 5.169927325469931E-5 68-69 6.528427078209425E-4 70-71 8.972231734449385E-4 72-73 0.0016086127794420352 74-75 0.0019842646912129488 76-77 0.0010072093504597639 78-79 1.0091595911582573E-4 80-81 0.004084047090176781 82-83 0.0017938503429165641 84-85 5.702046949324103E-5 86-87 2.886315813171856E-5 88-89 0.0015207171390085588 90-91 0.004221858568924412 92-93 0.015591067091584317 94-95 0.0016431081360081228 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 139.0 20-21 428.0 22-23 869.0 24-25 2400.0 26-27 2981.0 28-29 4992.0 30-31 13076.0 32-33 17469.0 34-35 24468.0 36-37 34520.0 38-39 39261.0 40-41 43273.0 42-43 52144.0 44-45 62623.0 46-47 61702.0 48-49 54412.0 50-51 48785.0 52-53 44664.0 54-55 47087.0 56-57 50294.0 58-59 51689.0 60-61 51380.0 62-63 50711.0 64-65 55836.0 66-67 58335.0 68-69 59781.0 70-71 58880.0 72-73 57067.0 74-75 58337.0 76-77 59189.0 78-79 62823.0 80-81 63549.0 82-83 62364.0 84-85 63518.0 86-87 66983.0 88-89 70626.0 90-91 76279.0 92-93 78525.0 94-95 88977.0 96-97 131597.0 98-99 561264.0 100-101 4139162.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.87589283504441 #Duplication Level Percentage of deduplicated Percentage of total 1 91.20108432590935 80.14376712663459 2 6.467078805053552 11.366006480573459 3 1.3617369112841295 3.5899154065658565 4 0.4836263010525029 1.699963720139947 5 0.19991986171497833 0.8784068171831166 6 0.09813355653465652 0.5174144338536749 7 0.05725465605081289 0.3521912813599992 8 0.037671181834272184 0.2648310990270379 9 0.022607776379230417 0.17880106809059104 >10 0.06999747791915831 0.9289142976618506 >50 7.129491862770422E-4 0.041310723077235184 >100 1.7619708101718716E-4 0.03847754583257186 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 7.538682108702067E-5 0.0 0.0 0.0 3 0.0 7.538682108702067E-5 0.0 0.0 0.0 4 0.0 1.2061891373923307E-4 0.0 0.0 0.0 5 0.0 1.2061891373923307E-4 0.0 0.0 0.0 6 0.0 1.2061891373923307E-4 0.0 0.0 1.5077364217404134E-5 7 0.0 1.2061891373923307E-4 0.0 1.5077364217404134E-5 1.5077364217404134E-5 8 0.0 1.356962779566372E-4 0.0 3.0154728434808268E-5 1.5077364217404134E-5 9 0.0 2.1108309904365786E-4 0.0 6.0309456869616535E-5 3.0154728434808268E-5 10-11 0.0 2.1108309904365786E-4 0.0 1.1308023163053101E-4 3.0154728434808268E-5 12-13 1.5077364217404134E-5 2.1862178115235993E-4 0.0 1.8846705271755167E-4 3.0154728434808268E-5 14-15 2.26160463261062E-5 2.940086022393806E-4 0.0 2.1108309904365786E-4 6.78481389783186E-5 16-17 4.52320926522124E-5 3.166246485654868E-4 0.0 2.3369914536976405E-4 9.04641853044248E-5 18-19 6.0309456869616535E-5 3.3924069489159304E-4 0.0 2.789312380219764E-4 1.0554154952182893E-4 20-21 6.0309456869616535E-5 3.618567412176992E-4 0.0 3.5431805910899716E-4 1.0554154952182893E-4 22-23 6.0309456869616535E-5 3.844727875438054E-4 0.0 6.030945686961653E-4 1.3569627795663718E-4 24-25 7.538682108702067E-5 4.5985960863082604E-4 0.0 0.001243882547935841 1.6585100639144546E-4 26-27 9.04641853044248E-5 4.824756549569323E-4 0.0 0.0033471748562637176 1.6585100639144546E-4 28-29 9.04641853044248E-5 4.824756549569323E-4 0.0 0.01666802614234027 1.7338968850014755E-4 30-31 1.0554154952182893E-4 6.030945686961653E-4 0.0 0.023648845774998383 1.8846705271755167E-4 32-33 1.0554154952182893E-4 6.030945686961653E-4 0.0 0.027071407452349122 2.1108309904365786E-4 34-35 1.2061891373923307E-4 7.538682108702067E-4 0.0 0.031783083770287913 2.1108309904365786E-4 36-37 1.356962779566372E-4 9.347965814790562E-4 0.0 0.0390352959588593 2.1108309904365786E-4 38-39 1.356962779566372E-4 9.800286741312686E-4 0.0 0.05079564004843452 2.1108309904365786E-4 40-41 1.6585100639144546E-4 0.0010554154952182894 0.0 0.07816859478513172 2.1108309904365786E-4 42-43 1.6585100639144546E-4 0.0010780315415443956 0.0 0.09065265235714234 2.1862178115235993E-4 44-45 1.6585100639144546E-4 0.0012137278195010327 0.0 0.10879826019278822 2.26160463261062E-4 46-47 1.6585100639144546E-4 0.0013117306869141596 0.0 0.12887377064826183 2.26160463261062E-4 48-49 1.7338968850014755E-4 0.0013192693690228616 0.0 0.1470193784839077 2.26160463261062E-4 50-51 1.809283706088496E-4 0.0014926590575230093 0.0 0.16367232726203057 2.26160463261062E-4 52-53 1.9600573482625374E-4 0.0015077364217404134 0.0 0.18873844527346495 2.638538738045723E-4 54-55 1.9600573482625374E-4 0.0015303524680665196 0.0 0.24299434040979373 3.166246485654868E-4 56-57 1.9600573482625374E-4 0.0015529685143926258 0.0 0.2985393501867105 3.317020127828909E-4 58-59 1.9600573482625374E-4 0.0015529685143926258 0.0 0.3403639585257896 3.39240694891593E-4 60-61 2.1108309904365786E-4 0.001575584560718732 0.0 0.36679457799889903 3.5431805910899716E-4 62-63 2.1108309904365786E-4 0.0016132779712622423 0.0 0.38404308266360937 3.618567412176992E-4 64-65 2.1108309904365786E-4 0.0018243610703059 0.0 0.39771825200879496 3.618567412176992E-4 66-67 2.1108309904365786E-4 0.0018469771166320062 0.0 0.406040957056802 3.618567412176992E-4 68-69 2.26160463261062E-4 0.0018846705271755167 0.0 0.4144465876080048 3.618567412176992E-4 70-71 2.26160463261062E-4 0.001907286573501623 0.0 0.4219098828956198 3.618567412176992E-4 72-73 2.26160463261062E-4 0.001914825255610325 0.0 0.4265612497566891 4.070888338699116E-4 74-75 2.26160463261062E-4 0.0019751347124799413 0.0 0.43097137879027975 4.070888338699116E-4 76-77 2.26160463261062E-4 0.0020354441693495578 0.0 0.434356247057087 4.070888338699116E-4 78-79 2.26160463261062E-4 0.002050521533566962 0.0 0.43753003222485054 4.070888338699116E-4 80-81 2.26160463261062E-4 0.0020655988977843665 0.0 0.4391659262424389 4.221661980873157E-4 82-83 2.26160463261062E-4 0.0020655988977843665 0.0 0.4396634792616132 4.6739829073952816E-4 84-85 2.26160463261062E-4 0.0020655988977843665 0.0 0.4399348718175265 4.6739829073952816E-4 86-87 2.26160463261062E-4 0.0020957536262191747 0.0 0.44007810677759185 4.6739829073952816E-4 88-89 2.26160463261062E-4 0.002238988586284514 0.0 0.4401233388702441 4.824756549569323E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8220 0.0 50.825066 1 GTATCAA 15525 0.0 38.345078 1 TCAACGC 19525 0.0 29.854761 4 ATCAACG 19620 0.0 29.731956 3 CAACGCA 20135 0.0 28.971489 5 TATCAAC 20305 0.0 28.939964 2 AACGCAG 20680 0.0 28.249249 6 ACGCAGA 23670 0.0 24.62671 7 CGCAGAG 25200 0.0 23.165384 8 GTACATG 20860 0.0 21.398554 1 TACATGG 20795 0.0 20.829277 2 GCAGAGT 28260 0.0 20.44563 9 ACATGGG 21085 0.0 19.8743 3 AGAGTAC 25370 0.0 19.27649 10-11 GAGTACT 16410 0.0 19.035585 12-13 CAGAGTA 27495 0.0 18.081564 10-11 CATGGGG 15055 0.0 17.99894 4 GTGGTAT 4180 0.0 17.968153 1 TGGTATC 4105 0.0 17.88061 2 AGTACTT 18015 0.0 17.24491 12-13 >>END_MODULE