##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139030_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8288760 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67437867666575 34.0 31.0 34.0 31.0 34.0 2 32.77645063917884 34.0 31.0 34.0 31.0 34.0 3 32.84426946853329 34.0 31.0 34.0 31.0 34.0 4 36.303882848580486 37.0 37.0 37.0 35.0 37.0 5 36.248271635323015 37.0 37.0 37.0 35.0 37.0 6 36.286678345132444 37.0 37.0 37.0 35.0 37.0 7 36.23504432508602 37.0 37.0 37.0 35.0 37.0 8 36.215703917111846 37.0 37.0 37.0 35.0 37.0 9 37.947334462573416 39.0 38.0 39.0 35.0 39.0 10-11 37.904616372050825 39.0 38.0 39.0 35.0 39.0 12-13 37.88052627896091 39.0 38.0 39.0 35.0 39.0 14-15 39.276533522505176 41.0 39.0 41.0 36.0 41.0 16-17 39.251920552652024 41.0 39.0 41.0 36.0 41.0 18-19 39.27101635226499 41.0 39.0 41.0 36.0 41.0 20-21 39.26498300867847 41.0 39.0 41.0 36.0 41.0 22-23 39.132728597616165 40.0 39.0 41.0 36.0 41.0 24-25 39.08204736671048 40.0 39.0 41.0 35.0 41.0 26-27 39.03146846997714 40.0 39.0 41.0 35.0 41.0 28-29 38.84147034261364 40.0 38.5 41.0 35.0 41.0 30-31 38.73033980671868 40.0 38.0 41.0 35.0 41.0 32-33 38.613901670029605 40.0 38.0 41.0 35.0 41.0 34-35 38.33538990183935 40.0 38.0 41.0 34.0 41.0 36-37 38.58650468596224 40.0 38.0 41.0 34.5 41.0 38-39 38.690704382629804 40.0 38.0 41.0 35.0 41.0 40-41 38.681933229704654 40.0 38.0 41.0 35.0 41.0 42-43 38.62699999644513 40.0 38.0 41.0 35.0 41.0 44-45 38.57981661657676 40.0 38.0 41.0 34.0 41.0 46-47 38.51122339096713 40.0 38.0 41.0 34.0 41.0 48-49 38.45300107452637 40.0 38.0 41.0 34.0 41.0 50-51 38.38158663063799 40.0 38.0 41.0 34.0 41.0 52-53 38.27411180179017 40.0 38.0 41.0 34.0 41.0 54-55 38.137674354920456 40.0 37.0 41.0 33.5 41.0 56-57 37.99749030083157 40.0 37.0 41.0 33.0 41.0 58-59 37.83372611119994 40.0 36.5 41.0 33.0 41.0 60-61 37.640607636333925 39.0 36.0 41.0 33.0 41.0 62-63 37.40678236599584 39.0 36.0 40.5 33.0 41.0 64-65 37.12522423266164 39.0 35.0 40.0 32.0 41.0 66-67 36.84350141316243 38.0 35.0 40.0 32.0 41.0 68-69 36.558618861942264 37.5 35.0 40.0 32.0 41.0 70-71 36.25160671740892 37.0 35.0 39.5 31.0 41.0 72-73 35.94807068654242 36.5 35.0 39.0 31.0 40.5 74-75 35.6289559826584 36.0 34.0 39.0 31.0 40.0 76-77 34.57718509028995 35.0 33.5 37.0 29.5 39.0 78-79 34.853116366714175 35.0 34.0 37.0 30.5 39.0 80-81 34.65117253548597 35.0 34.0 37.0 31.0 39.0 82-83 34.41290648141833 35.0 34.0 36.5 30.0 38.5 84-85 34.16015598884833 35.0 34.0 36.0 30.0 37.0 86-87 33.91684759800577 35.0 34.0 35.5 30.0 37.0 88-89 33.72360683518351 35.0 33.5 35.0 30.0 36.5 90-91 33.558135113001995 35.0 33.0 35.0 30.0 36.0 92-93 33.43353255257691 35.0 33.0 35.0 30.0 36.0 94-95 33.35746762697555 35.0 33.0 35.0 30.0 36.0 96-97 33.308836724266015 34.0 33.0 35.0 30.0 35.0 98-99 33.320494857868574 34.0 33.0 35.0 30.0 35.0 100-101 32.299283862040475 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 0.0 18 3.0 19 11.0 20 30.0 21 229.0 22 1034.0 23 3372.0 24 8528.0 25 17332.0 26 30834.0 27 48321.0 28 69692.0 29 94273.0 30 121824.0 31 154048.0 32 194587.0 33 255128.0 34 360578.0 35 522656.0 36 893245.0 37 1832128.0 38 2484992.0 39 1147140.0 40 48773.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.09031968360036 21.458908560245092 15.312885235640852 24.13788652051369 2 13.60145153444342 22.211401480200294 41.526043938861626 22.66110304649466 3 16.593376644199694 27.505721906017534 31.63274502250578 24.268156427276992 4 11.774260993022114 19.27627757982559 39.69066294371243 29.258798483439858 5 12.568662277267595 38.42727704198868 36.04133454010842 12.962726140635302 6 28.512727721089213 39.18334930275441 19.337336184745652 12.966586791410728 7 25.357861170773578 33.398244538175135 24.10413911177777 17.139755179273518 8 24.003037850678417 36.8381499996079 21.727678040912053 17.431134108801626 9 25.544556725010736 16.752421351323964 21.75271090006225 35.95031102360305 10-11 23.491428361505722 27.225358631771137 29.612151251342254 19.671061755380887 12-13 24.567860572630888 25.030414682051354 29.56532098890546 20.8364037564123 14-15 21.75385241259729 26.24803618226352 27.432564230201546 24.565547174937645 16-17 21.012640619227707 29.308339560823782 28.052753218367865 21.626266601580642 18-19 21.04408321877049 28.454538709371914 29.9825667425325 20.518811329325093 20-21 21.96377246018309 27.535461478498945 29.868899092851652 20.631866968466312 22-23 21.774561805550988 27.501250191472803 29.610168911742484 21.114019091233722 24-25 21.430479224558603 27.706470250865607 29.708177560167385 21.154872964408405 26-27 21.35502705768932 27.81850553122476 29.61970720571831 21.206760205367612 28-29 21.26624890029312 27.91289727498182 29.666985056836825 21.15386876788823 30-31 21.54894145099497 27.740665685656907 29.584445139002806 21.125947724345316 32-33 21.351530215587708 27.890655506826718 29.523776863032815 21.234037414552766 34-35 21.504908197690124 27.927683832995825 29.46231624252053 21.10509172679352 36-37 21.50121911188806 27.86789926486866 29.42220050840859 21.20868111483469 38-39 21.386136643386685 28.027813863430325 29.383322627928766 21.202726865254228 40-41 21.532991125200176 27.93463588071195 29.263827978773087 21.26854501531479 42-43 21.45550892239906 28.079792721776354 29.017587014797495 21.447111341027085 44-45 21.582936973992734 28.159727543999562 28.819939470148164 21.437396011859537 46-47 21.612189658189266 28.136933199433923 28.530511568012002 21.720365574364813 48-49 21.629011216156687 28.371835925587067 28.35975132025757 21.63940153799867 50-51 21.644994763596486 28.36390848214488 28.261032286989362 21.730064467269273 52-53 21.71115912757116 28.34923783388111 28.11722499671206 21.822378041835673 54-55 21.76421598961237 28.288559381977347 28.144712048509803 21.80251257990048 56-57 21.786596014208296 28.292431791272172 28.09434506253262 21.82662713198691 58-59 21.691567765932344 28.435934316962875 28.134603457953876 21.737894459150905 60-61 21.86343666766698 28.36232931405485 28.0840181060869 21.69021591219127 62-63 21.788010916063612 28.447048002698722 28.009506792584236 21.755434288653426 64-65 21.778304818063248 28.374957287891363 28.006228308191066 21.840509585854324 66-67 21.865281702698073 28.404074408394152 27.850021751362842 21.880622137544933 68-69 21.73114407197033 28.359437181282175 28.01618116783461 21.89323757891288 70-71 21.72683195094964 28.23299204691577 28.027226866774168 22.01294913536043 72-73 21.797704513061138 28.205742604751038 27.96766596333054 22.02888691885728 74-75 21.742814050080636 28.312797500453602 27.896380062083526 22.048008387382232 76-77 21.876167545124968 28.217484702393687 27.890321601664407 22.016026150816938 78-79 21.84437731759205 28.136676700198542 27.874058173187276 22.144887809022133 80-81 21.828607090729566 28.202937777177468 27.894530663923874 22.073924468169093 82-83 21.87401151083212 28.185537329553895 27.954922357051164 21.985528802562822 84-85 21.994235128380776 28.14655308174943 27.88901675702713 21.970195032842664 86-87 21.816601858676552 28.179755092450804 27.960047043826847 22.0435960050458 88-89 21.917749304067954 28.062456780664156 27.932599261472706 22.087194653795184 90-91 21.93589682746365 28.100693562364583 27.964780702926312 21.998628907245454 92-93 22.036997705504604 28.050242693555827 27.972844177954865 21.93991542298471 94-95 21.8871992776422 28.06305051909998 28.02132852639766 22.02842167686016 96-97 21.818537552631838 28.097090354688458 28.101136051929963 21.98323604074974 98-99 22.073435961091953 28.653615868305643 28.129050848859823 21.14389732174258 100-101 22.62543391858586 31.29315780678972 25.389283747237947 20.69212452738648 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2396.0 1 2103.5 2 2896.0 3 4163.5 4 5524.5 5 8338.5 6 10574.0 7 12709.0 8 14429.0 9 14409.5 10 13034.5 11 11668.5 12 12919.5 13 17578.5 14 28430.5 15 43380.0 16 55077.0 17 60744.5 18 60793.5 19 56519.5 20 50641.0 21 45270.5 22 42528.5 23 45224.5 24 52957.0 25 65189.0 26 81132.5 27 98779.0 28 117587.0 29 138284.0 30 158826.0 31 180250.5 32 203678.0 33 227697.0 34 248280.0 35 264492.0 36 283173.0 37 300273.5 38 309981.5 39 315882.5 40 321267.5 41 325859.0 42 328576.0 43 332616.0 44 336860.0 45 337981.5 46 336294.0 47 332870.5 48 329844.5 49 323131.0 50 310736.5 51 296303.0 52 279719.0 53 262610.5 54 246366.0 55 226712.0 56 206403.0 57 185623.5 58 162899.5 59 139882.5 60 115928.0 61 93379.5 62 73188.0 63 55533.5 64 41519.5 65 31310.0 66 23766.5 67 18159.0 68 13953.0 69 10246.0 70 7331.5 71 5274.0 72 3630.5 73 2542.0 74 1749.5 75 1183.5 76 777.0 77 505.0 78 343.0 79 215.5 80 137.0 81 90.0 82 59.5 83 43.0 84 28.5 85 17.0 86 13.5 87 12.5 88 8.5 89 6.5 90 5.0 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.4129061524281074E-5 2 0.0018338086758453618 3 1.2064530762140537E-5 4 2.4129061524281074E-5 5 2.4129061524281074E-5 6 2.4129061524281074E-5 7 1.2064530762140537E-5 8 6.032265381070269E-5 9 0.0 10-11 6.0322653810702685E-6 12-13 0.0 14-15 6.997427842041511E-4 16-17 0.00291961644443801 18-19 6.032265381070269E-5 20-21 0.0 22-23 0.0010316348722027612 24-25 0.005491185320022057 26-27 0.01002069756973334 28-29 0.36044013812191233 30-31 0.3299379342279134 32-33 0.3331960697153734 34-35 0.18793763519528847 36-37 0.04569618652931847 38-39 0.0360129595075564 40-41 0.02208536398045881 42-43 0.02965061597426468 44-45 0.01813982220208642 46-47 0.013842516880850869 48-49 0.00790603117235148 50-51 0.004053240675992487 52-53 0.0026563905904510134 54-55 3.617215948581341E-4 56-57 0.002552855209412702 58-59 0.004842463428030693 60-61 0.0032323058919335543 62-63 0.002866116417700318 64-65 2.1982862435231275E-4 66-67 1.1794983482513279E-4 68-69 8.903460964563104E-4 70-71 0.0012044507715109416 72-73 0.0020259908133128932 74-75 0.0021920034412283725 76-77 9.506638375885901E-4 78-79 1.1831981135089279E-4 80-81 0.0031502718587337283 82-83 0.0014766773578107372 84-85 3.065360302066735E-5 86-87 1.5518842629546836E-5 88-89 0.0013995104701073605 90-91 0.003477461622103448 92-93 0.015274861659643686 94-95 0.0016714866688234058 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 154.0 20-21 567.0 22-23 1119.0 24-25 3168.0 26-27 4027.0 28-29 6653.0 30-31 17336.0 32-33 22945.0 34-35 31373.0 36-37 44926.0 38-39 53258.0 40-41 58545.0 42-43 69703.0 44-45 83017.0 46-47 82122.0 48-49 71480.0 50-51 63345.0 52-53 57439.0 54-55 60956.0 56-57 64622.0 58-59 66047.0 60-61 65664.0 62-63 64613.0 64-65 70635.0 66-67 74461.0 68-69 74812.0 70-71 73479.0 72-73 72562.0 74-75 74021.0 76-77 74741.0 78-79 79036.0 80-81 79720.0 82-83 78146.0 84-85 79984.0 86-87 82978.0 88-89 88902.0 90-91 95027.0 92-93 97865.0 94-95 109719.0 96-97 160270.0 98-99 689244.0 100-101 5140079.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.41902425451376 #Duplication Level Percentage of deduplicated Percentage of total 1 89.47425053765649 75.53328926292863 2 7.202157178072854 12.159981630011055 3 1.8493536744907195 4.683618981060186 4 0.6869738303653925 2.3197464179132914 5 0.29470679178951054 1.2439429902024313 6 0.16305363920389776 0.8258897473644347 7 0.09554137113429025 0.5645856528966604 8 0.06080998392653643 0.41068156064086964 9 0.039178912995484164 0.2976701045788136 >10 0.1304527058413287 1.6851259511180217 >50 0.0028659830092417483 0.15104257175796384 >100 6.075734092739896E-4 0.09901377034116868 >500 4.781810502416388E-5 0.025411359186503425 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.4129061524281074E-5 0.0 5 0.0 0.0 0.0 2.4129061524281074E-5 0.0 6 0.0 0.0 0.0 2.4129061524281074E-5 1.2064530762140537E-5 7 0.0 0.0 0.0 2.4129061524281074E-5 1.2064530762140537E-5 8 1.2064530762140537E-5 0.0 0.0 3.619359228642161E-5 1.2064530762140537E-5 9 1.2064530762140537E-5 2.4129061524281074E-5 0.0 4.825812304856215E-5 1.2064530762140537E-5 10-11 4.825812304856215E-5 3.0161326905351345E-5 0.0 9.65162460971243E-5 1.2064530762140537E-5 12-13 6.032265381070268E-5 3.619359228642161E-5 0.0 9.65162460971243E-5 1.2064530762140537E-5 14-15 6.032265381070268E-5 4.825812304856215E-5 0.0 1.0254851147819456E-4 1.8096796143210806E-5 16-17 6.635491919177296E-5 4.825812304856215E-5 0.0 1.3270983838354592E-4 2.4129061524281074E-5 18-19 7.238718457284323E-5 5.4290388429632416E-5 0.0 1.749356960510378E-4 2.4129061524281074E-5 20-21 7.238718457284323E-5 6.032265381070268E-5 0.0 2.5335514600495127E-4 3.0161326905351345E-5 22-23 9.65162460971243E-5 7.238718457284323E-5 0.0 5.790974765827458E-4 3.619359228642161E-5 24-25 1.0858077685926483E-4 8.445171533498376E-5 0.0 0.0015985503259836212 4.825812304856215E-5 26-27 1.2064530762140537E-4 9.65162460971243E-5 0.0 0.004862005897142637 5.4290388429632416E-5 28-29 1.2064530762140537E-4 1.0254851147819456E-4 0.0 0.019580733426954093 6.032265381070268E-5 30-31 1.5683889990782699E-4 1.146130422403351E-4 0.0 0.02719345233786477 6.635491919177296E-5 32-33 1.6287116528889724E-4 1.2064530762140537E-4 0.0 0.030794714770363725 7.238718457284323E-5 34-35 1.870002268131783E-4 1.3270983838354592E-4 0.0 0.03545765590993104 7.238718457284323E-5 36-37 2.0509702295638913E-4 1.4477436914568645E-4 0.0 0.04203282517529763 7.238718457284323E-5 38-39 2.0509702295638913E-4 1.4477436914568645E-4 0.0 0.05482726004854767 7.238718457284323E-5 40-41 2.1716155371852966E-4 1.6890343066996752E-4 0.0 0.08375800481616068 7.238718457284323E-5 42-43 2.1716155371852966E-4 1.870002268131783E-4 0.0 0.0959492131513037 7.238718457284323E-5 44-45 2.2319381909959994E-4 2.4129061524281073E-4 0.0 0.11314720175273503 7.238718457284323E-5 46-47 2.292260844806702E-4 2.7748420752923234E-4 0.0 0.13330703265627186 7.238718457284323E-5 48-49 2.292260844806702E-4 2.7748420752923234E-4 0.0 0.1505472471153707 8.445171533498376E-5 50-51 2.292260844806702E-4 2.9558100367244316E-4 0.0 0.16731694487474605 8.445171533498376E-5 52-53 2.292260844806702E-4 3.016132690535134E-4 0.0 0.1930143953981054 1.146130422403351E-4 54-55 2.292260844806702E-4 3.0764553443458366E-4 0.0 0.24793213942736914 1.3270983838354592E-4 56-57 2.292260844806702E-4 3.1367779981565397E-4 0.0 0.30337469054478594 1.3270983838354592E-4 58-59 2.292260844806702E-4 3.1367779981565397E-4 0.0 0.343983901090151 1.3270983838354592E-4 60-61 2.4129061524281073E-4 3.1367779981565397E-4 0.0 0.37001915847485023 1.3270983838354592E-4 62-63 2.4129061524281073E-4 3.1367779981565397E-4 0.0 0.3868491788880363 1.3270983838354592E-4 64-65 2.4129061524281073E-4 3.498713921020756E-4 0.0 0.3994867748613785 1.3270983838354592E-4 66-67 2.4129061524281073E-4 3.498713921020756E-4 0.0 0.40759413953353696 1.3270983838354592E-4 68-69 2.4129061524281073E-4 3.498713921020756E-4 0.0 0.41526718109825833 1.3270983838354592E-4 70-71 2.4129061524281073E-4 3.498713921020756E-4 0.0 0.42233699612487274 1.3270983838354592E-4 72-73 2.4129061524281073E-4 3.5590365748314586E-4 0.0 0.42716884069510996 1.6890343066996752E-4 74-75 2.4129061524281073E-4 3.740004536263567E-4 0.0 0.4312768134196189 1.6890343066996752E-4 76-77 2.5335514600495127E-4 3.8003271900742693E-4 0.0 0.43438343009087005 1.6890343066996752E-4 78-79 2.6541967676709183E-4 3.860649843884972E-4 0.0 0.4371341431046381 1.6890343066996752E-4 80-81 2.6541967676709183E-4 3.860649843884972E-4 0.0 0.43838885430390073 1.8096796143210806E-4 82-83 2.6541967676709183E-4 3.9812951515063775E-4 0.0 0.43887143553438634 1.930324921942486E-4 84-85 2.6541967676709183E-4 3.9812951515063775E-4 0.0 0.43920924239572623 1.930324921942486E-4 86-87 2.6541967676709183E-4 4.1019404591277826E-4 0.0 0.43928766184568013 1.930324921942486E-4 88-89 2.714519421481621E-4 4.584521689613404E-4 0.0 0.43929369411106123 1.930324921942486E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11920 0.0 51.556797 1 GTATCAA 22200 0.0 37.766632 1 ATCAACG 27405 0.0 30.018696 3 TCAACGC 27625 0.0 29.79504 4 CAACGCA 28000 0.0 29.411198 5 TATCAAC 28510 0.0 29.06456 2 AACGCAG 28675 0.0 28.763395 6 ACGCAGA 33210 0.0 24.822786 7 CGCAGAG 33620 0.0 24.52007 8 GCAGAGT 38525 0.0 21.299267 9 GTACATG 27080 0.0 20.682463 1 TACATGG 27445 0.0 20.236822 2 ACATGGG 27030 0.0 20.043434 3 GAGTACT 22680 0.0 19.76125 12-13 AGAGTAC 35465 0.0 18.986092 10-11 CAGAGTA 37930 0.0 18.762146 10-11 CATGGGG 18730 0.0 18.382328 4 GTACTTT 25445 0.0 17.63119 14-15 AGTACTT 24930 0.0 17.286291 12-13 GTGGTAT 5715 0.0 16.681181 1 >>END_MODULE