##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139029_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9863993 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6522868578678 34.0 31.0 34.0 31.0 34.0 2 32.76088162268566 34.0 31.0 34.0 31.0 34.0 3 32.828733353724 34.0 31.0 34.0 31.0 34.0 4 36.294863550693925 37.0 37.0 37.0 35.0 37.0 5 36.23546113627615 37.0 37.0 37.0 35.0 37.0 6 36.27253800768107 37.0 37.0 37.0 35.0 37.0 7 36.22118821454963 37.0 37.0 37.0 35.0 37.0 8 36.19827660056125 37.0 37.0 37.0 35.0 37.0 9 37.926710004761766 39.0 38.0 39.0 35.0 39.0 10-11 37.880977764278626 39.0 38.0 39.0 35.0 39.0 12-13 37.85818587868017 39.0 38.0 39.0 35.0 39.0 14-15 39.25584132105528 41.0 39.0 41.0 36.0 41.0 16-17 39.2291641934458 41.0 39.0 41.0 36.0 41.0 18-19 39.24023425401863 41.0 39.0 41.0 36.0 41.0 20-21 39.232584825703185 40.5 39.0 41.0 36.0 41.0 22-23 39.1036098757545 40.0 39.0 41.0 35.5 41.0 24-25 39.05469799697773 40.0 39.0 41.0 35.0 41.0 26-27 39.00658738522241 40.0 38.5 41.0 35.0 41.0 28-29 38.819425292104256 40.0 38.5 41.0 35.0 41.0 30-31 38.70959919708645 40.0 38.0 41.0 35.0 41.0 32-33 38.59715756653074 40.0 38.0 41.0 35.0 41.0 34-35 38.31910338881777 40.0 38.0 41.0 34.0 41.0 36-37 38.56645824309233 40.0 38.0 41.0 34.5 41.0 38-39 38.669730937260496 40.0 38.0 41.0 35.0 41.0 40-41 38.65900619314326 40.0 38.0 41.0 35.0 41.0 42-43 38.60257877217698 40.0 38.0 41.0 34.5 41.0 44-45 38.553266992025826 40.0 38.0 41.0 34.0 41.0 46-47 38.48334484871393 40.0 38.0 41.0 34.0 41.0 48-49 38.42362270404564 40.0 38.0 41.0 34.0 41.0 50-51 38.35692814817453 40.0 38.0 41.0 34.0 41.0 52-53 38.249784169137726 40.0 37.5 41.0 34.0 41.0 54-55 38.110459842743225 40.0 37.0 41.0 33.0 41.0 56-57 37.97347234431837 40.0 37.0 41.0 33.0 41.0 58-59 37.811846524036824 40.0 36.5 41.0 33.0 41.0 60-61 37.61993058532309 39.0 36.0 41.0 33.0 41.0 62-63 37.39363342459842 39.0 36.0 40.5 33.0 41.0 64-65 37.11589492425017 39.0 35.0 40.0 32.0 41.0 66-67 36.83764973141682 38.0 35.0 40.0 32.0 41.0 68-69 36.555627927634454 37.5 35.0 40.0 31.5 41.0 70-71 36.24992023809088 37.0 35.0 39.5 31.0 41.0 72-73 35.94804352506493 36.5 35.0 39.0 31.0 40.5 74-75 35.631778867954836 36.0 34.0 39.0 31.0 40.0 76-77 34.58193922210468 35.0 33.5 37.0 29.5 39.0 78-79 34.8593980446339 35.0 34.0 37.0 30.5 39.0 80-81 34.65464072899132 35.0 34.0 37.0 30.0 39.0 82-83 34.407798327634616 35.0 34.0 36.5 30.0 38.5 84-85 34.15064561041521 35.0 34.0 36.0 30.0 37.0 86-87 33.90101549780436 35.0 34.0 36.0 30.0 37.0 88-89 33.703638020689944 35.0 33.5 35.0 30.0 36.5 90-91 33.5346249176743 35.0 33.0 35.0 30.0 36.0 92-93 33.40771546426636 35.0 33.0 35.0 30.0 36.0 94-95 33.332459812429 35.0 33.0 35.0 30.0 36.0 96-97 33.28817681441414 34.0 33.0 35.0 30.0 35.0 98-99 33.30136220791347 34.0 33.0 35.0 30.0 35.0 100-101 32.27215602751079 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 8.0 20 54.0 21 283.0 22 1300.0 23 4157.0 24 10606.0 25 21758.0 26 38641.0 27 59831.0 28 86117.0 29 115241.0 30 147982.0 31 188225.0 32 236833.0 33 308710.0 34 432388.0 35 626798.0 36 1066206.0 37 2167846.0 38 2963670.0 39 1332538.0 40 54799.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.6057225721313 21.872444936334592 15.54238036105264 23.979452130481466 2 13.43514835404806 22.3153953492333 41.79911344835823 22.450342848360414 3 16.481726311388563 27.566276165499342 31.7784353209568 24.173562202155292 4 11.652566557751985 19.40511902384329 40.03036296671023 28.911951451694495 5 12.502454635248553 38.421263766359885 36.283984849540104 12.792296748851454 6 28.344713615411855 39.529293974416646 19.389879816394803 12.736112593776697 7 25.093058174931425 33.517356210077644 24.327404597185865 17.062181017805063 8 23.686897334089622 37.29374081570481 21.810718487507838 17.208643362697735 9 25.190559239042443 17.004077354880522 21.97771227128811 35.82765113478892 10-11 23.32058629806408 27.38514717113039 29.807974316283474 19.48629221452205 12-13 24.41399238624764 25.05388537887243 29.794526415418176 20.737595819461756 14-15 21.558564148585177 26.403767098342072 27.52802470292905 24.5096440501437 16-17 20.922151962996075 29.46378545882911 28.135299591365744 21.478762986809073 18-19 20.93395104169856 28.66442125931647 30.001020885471654 20.40060681351332 20-21 21.82592984187449 27.774663117373144 29.83231423109291 20.567092809659453 22-23 21.621995943778245 27.69543418028398 29.586794841624748 21.095775034313025 24-25 21.29420186243769 27.843943933675654 29.736050288768762 21.125803915117903 26-27 21.259791474023633 27.943739855725763 29.65350453874556 21.14296413150505 28-29 21.19730866565452 28.072785814217255 29.62359312794024 21.106312392187977 30-31 21.450423814550106 27.943392177919037 29.56217467244902 21.044009335081835 32-33 21.298153733416832 28.049551311326393 29.472369331355665 21.17992562390111 34-35 21.446588528490306 28.114098396943156 29.3898613355856 21.049451738980938 36-37 21.406476877429235 28.068965969879013 29.387491253706056 21.137065898985703 38-39 21.310278913051548 28.16768703835828 29.40002556943545 21.122008479154726 40-41 21.48209089301804 28.07392141577345 29.254415488253173 21.18957220295534 42-43 21.415565751217436 28.208605797579946 29.008502143096145 21.367326308106477 44-45 21.542482240723622 28.281970831279157 28.823914572217056 21.35163235578016 46-47 21.578588950410147 28.31116357808731 28.552359001308442 21.5578884701941 48-49 21.568608402862516 28.448805312833684 28.435956357562702 21.546629926741094 50-51 21.593827607519298 28.468316582695664 28.338064611233666 21.599791198551376 52-53 21.670905717511832 28.44486535084347 28.201786453247497 21.682442478397196 54-55 21.708956000192014 28.35340451388183 28.247868378781522 21.689771107144633 56-57 21.669249717589818 28.451190856138137 28.22254448462114 21.657014941650914 58-59 21.649391546408395 28.493884653198364 28.231847002072925 21.624876798320315 60-61 21.753730631279062 28.430886428128645 28.21920878628264 21.596174154309658 62-63 21.731364467998958 28.46599946039044 28.17415844664652 21.62847762496409 64-65 21.70041747127953 28.42587612064739 28.16478769097462 21.70891871709846 66-67 21.719933341014148 28.449031079214805 28.06543336834382 21.765602211427225 68-69 21.68582429576452 28.46427658540026 28.08981349659934 21.760085622235874 70-71 21.70167688641914 28.272759491098874 28.140179874086492 21.885383748395494 72-73 21.737455430239354 28.299537121434902 28.13087298791438 21.83213446041136 74-75 21.668529736652584 28.354304340806813 28.099288747638308 21.877877174902302 76-77 21.745868631043365 28.296034766188882 28.024590126608796 21.93350647615896 78-79 21.676155780718293 28.284528245436235 28.060622010306275 21.978693963539197 80-81 21.766698945351976 28.258692131211056 28.03293369069474 21.941675232742227 82-83 21.77287426599145 28.25553937308247 28.10570488762916 21.865881473296923 84-85 21.867125605673817 28.238363509652064 28.077400575556737 21.817110309117382 86-87 21.719900536491572 28.242896977434473 28.12642166413855 21.9107808219354 88-89 21.801424537905056 28.14734700999148 28.104673433006027 21.94655501909743 90-91 21.802400517830623 28.167839253096044 28.120594724620307 21.909165504453025 92-93 21.824826458139803 28.041687525599603 28.209527200494726 21.92395881576587 94-95 21.626787549539216 28.13758795204088 28.268833470034664 21.966791028385234 96-97 21.639825039025453 28.207714294246767 28.256965114302712 21.895495552425064 98-99 21.887735939083917 28.742394042352448 28.336212406844236 21.033657611719395 100-101 22.441237701660178 31.429876003590845 25.56533755008373 20.56354874466525 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2432.0 1 2119.5 2 2831.0 3 4043.5 4 5376.0 5 8179.0 6 10466.0 7 12562.0 8 14173.0 9 14116.5 10 12869.0 11 11714.5 12 13100.0 13 18075.0 14 29613.5 15 45311.0 16 57943.5 17 64477.0 18 65293.5 19 62297.5 20 57445.5 21 52994.5 22 51733.5 23 56210.5 24 65930.0 25 81212.0 26 100999.5 27 122902.0 28 147224.5 29 173427.0 30 198955.5 31 225601.5 32 252094.5 33 275347.0 34 298027.0 35 318616.0 36 339674.5 37 358960.5 38 371729.0 39 380611.0 40 389298.5 41 397025.0 42 397971.0 43 397403.5 44 398559.0 45 399325.5 46 398031.0 47 393579.0 48 386196.5 49 374995.5 50 362241.5 51 345873.0 52 325140.5 53 304170.0 54 283155.5 55 259662.0 56 235564.5 57 210585.5 58 184547.5 59 157725.5 60 129775.5 61 104493.5 62 81998.5 63 62664.0 64 46879.0 65 34551.0 66 25998.0 67 19740.5 68 14624.5 69 10439.5 70 7446.0 71 5360.0 72 3826.0 73 2678.5 74 1879.0 75 1306.0 76 832.5 77 492.0 78 312.0 79 203.0 80 133.5 81 96.0 82 72.0 83 51.0 84 35.5 85 23.5 86 15.5 87 14.5 88 12.0 89 7.0 90 3.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.0275764591479334E-5 2 0.0015916475204311277 3 2.0275764591479334E-5 4 3.0413646887219E-5 5 2.0275764591479334E-5 6 2.0275764591479334E-5 7 2.0275764591479334E-5 8 8.110305836591734E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 6.234797611879895E-4 16-17 0.0028639517485464557 18-19 7.096517607017767E-5 20-21 0.0 22-23 0.0010797954107072817 24-25 0.005704212111913296 26-27 0.010443418734022304 28-29 0.3632970564022575 30-31 0.331157467252666 32-33 0.33406505027213507 34-35 0.1901152136071507 36-37 0.04785289046679913 38-39 0.038014923266488324 40-41 0.024333466278160815 42-43 0.03146558848690458 44-45 0.020096231306411402 46-47 0.01456212658299992 48-49 0.009794088020139865 50-51 0.005589877656896448 52-53 0.0038708805108253813 54-55 7.359738757834278E-4 56-57 0.0025908266026739876 58-59 0.004800016253078289 60-61 0.0038161985922730082 62-63 0.0030992813924424194 64-65 4.2935400598450793E-4 66-67 7.511321728572381E-5 68-69 7.409741184158323E-4 70-71 9.605418257330805E-4 72-73 0.0017735636529912014 74-75 0.0020014729157739925 76-77 9.532377966436559E-4 78-79 1.4726211201725715E-4 80-81 0.00356157352552097 82-83 0.001449686466078592 84-85 3.808269861111129E-5 86-87 1.9265913467920296E-5 88-89 0.0015672311603532397 90-91 0.004331329999813429 92-93 0.015538048075871714 94-95 0.0016999544956180612 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 142.0 20-21 598.0 22-23 1305.0 24-25 3123.0 26-27 4406.0 28-29 7168.0 30-31 18866.0 32-33 25274.0 34-35 35641.0 36-37 49734.0 38-39 59245.0 40-41 63629.0 42-43 75877.0 44-45 91224.0 46-47 90428.0 48-49 79510.0 50-51 70487.0 52-53 66425.0 54-55 70622.0 56-57 73470.0 58-59 74467.0 60-61 75941.0 62-63 73250.0 64-65 78650.0 66-67 83712.0 68-69 84764.0 70-71 84294.0 72-73 82329.0 74-75 83488.0 76-77 84812.0 78-79 89879.0 80-81 91726.0 82-83 89438.0 84-85 91041.0 86-87 95371.0 88-89 102192.0 90-91 111617.0 92-93 114761.0 94-95 130132.0 96-97 192310.0 98-99 832566.0 100-101 6230079.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.32143442053302 #Duplication Level Percentage of deduplicated Percentage of total 1 88.61114815693487 73.83207970086184 2 7.651820987833228 12.751214012708093 3 2.0293040793931625 5.0725358031143255 4 0.7822017219500574 2.6069667791635887 5 0.3736431997805059 1.5566243683594772 6 0.1838577701347979 0.9191575882195198 7 0.11234751502499367 0.6552669273825401 8 0.07304987841514124 0.4869296523036081 9 0.04790760155376625 0.35925570729964446 >10 0.13277790816161014 1.6173962656911414 >50 0.0016606414813228765 0.08897482755530785 >100 2.6011078239890383E-4 0.04449193738873118 >500 2.042855420694965E-5 0.009106429952184528 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.0275764591479334E-5 2 0.0 1.0137882295739667E-5 0.0 0.0 3.0413646887218998E-5 3 0.0 1.0137882295739667E-5 0.0 1.0137882295739667E-5 3.0413646887218998E-5 4 0.0 3.0413646887218998E-5 0.0 1.0137882295739667E-5 3.0413646887218998E-5 5 0.0 3.0413646887218998E-5 0.0 2.0275764591479334E-5 3.0413646887218998E-5 6 0.0 3.0413646887218998E-5 0.0 2.0275764591479334E-5 4.055152918295867E-5 7 0.0 3.0413646887218998E-5 0.0 2.0275764591479334E-5 4.055152918295867E-5 8 0.0 3.0413646887218998E-5 0.0 3.0413646887218998E-5 4.055152918295867E-5 9 0.0 8.110305836591734E-5 0.0 4.055152918295867E-5 4.055152918295867E-5 10-11 1.0137882295739667E-5 8.110305836591734E-5 0.0 5.575835262656817E-5 4.055152918295867E-5 12-13 1.52068234436095E-5 8.110305836591734E-5 0.0 6.0827293774437996E-5 4.055152918295867E-5 14-15 2.0275764591479334E-5 1.0644776410526649E-4 0.0 6.589623492230784E-5 4.56204703308285E-5 16-17 3.0413646887219E-5 1.1151670525313633E-4 0.0 8.110305836591734E-5 6.0827293774437996E-5 18-19 4.055152918295867E-5 1.1658564640100616E-4 0.0 8.617199951378717E-5 6.0827293774437996E-5 20-21 4.055152918295867E-5 1.2165458754887599E-4 0.0 1.0644776410526649E-4 6.589623492230784E-5 22-23 4.055152918295867E-5 1.52068234436095E-4 0.0 2.8386070428071066E-4 9.1240940661657E-5 24-25 4.055152918295867E-5 1.7741294017544417E-4 0.0 9.783056415388779E-4 1.0644776410526649E-4 26-27 4.055152918295867E-5 1.82481881323314E-4 0.0 0.0030869851590527284 1.1151670525313633E-4 28-29 4.055152918295867E-5 1.82481881323314E-4 0.0 0.015429856854115772 1.1658564640100616E-4 30-31 4.56204703308285E-5 1.9261976361905367E-4 0.0 0.02159368928992549 1.2165458754887599E-4 32-33 5.068941147869833E-5 1.9261976361905367E-4 0.0 0.023844299159579696 1.4193035214035533E-4 34-35 5.575835262656817E-5 2.1289552821053298E-4 0.0 0.026743733496161243 1.52068234436095E-4 36-37 6.0827293774437996E-5 2.3317129280201233E-4 0.0 0.031097953942181428 1.6220611673183467E-4 38-39 6.0827293774437996E-5 2.4330917509775198E-4 0.0 0.038878778604161626 1.6220611673183467E-4 40-41 6.0827293774437996E-5 2.6358493968923135E-4 0.0 0.054780046985029286 1.7234399902757433E-4 42-43 6.0827293774437996E-5 2.6358493968923135E-4 0.0 0.06238345870683404 1.8755082247118383E-4 44-45 6.0827293774437996E-5 2.889296454285805E-4 0.0 0.07227296288632809 2.1289552821053298E-4 46-47 6.0827293774437996E-5 3.0413646887219E-4 0.0 0.08376932140969687 2.2303341050627267E-4 48-49 6.0827293774437996E-5 3.092054100200598E-4 0.0 0.0949209919350105 2.2303341050627267E-4 50-51 6.0827293774437996E-5 3.5482588035088834E-4 0.0 0.10563673352160732 2.3317129280201233E-4 52-53 6.0827293774437996E-5 3.5482588035088834E-4 0.0 0.1190694275634624 2.6358493968923135E-4 54-55 7.096517607017767E-5 3.5482588035088834E-4 0.0 0.14500719941711232 2.9906752772432016E-4 56-57 7.096517607017767E-5 3.5482588035088834E-4 0.0 0.1715228305616194 3.0413646887219E-4 58-59 7.096517607017767E-5 3.5482588035088834E-4 0.0 0.19892552640700373 3.0413646887219E-4 60-61 7.096517607017767E-5 3.5482588035088834E-4 0.0 0.21708754253982135 3.092054100200598E-4 62-63 7.096517607017767E-5 3.64963762646628E-4 0.0 0.22717980436523016 3.2441223346366935E-4 64-65 7.096517607017767E-5 4.3592893871680565E-4 0.0 0.23704396383898488 3.2441223346366935E-4 66-67 7.096517607017767E-5 4.3592893871680565E-4 0.0 0.24342069180300513 3.2948117461153916E-4 68-69 7.096517607017767E-5 4.4606682101254534E-4 0.0 0.24943752494552662 3.34550115759409E-4 70-71 7.096517607017767E-5 4.4606682101254534E-4 0.0 0.25496267079670476 3.5482588035088834E-4 72-73 7.096517607017767E-5 4.4606682101254534E-4 0.0 0.25917496089058456 3.8523952723810734E-4 74-75 7.096517607017767E-5 4.6634258560402465E-4 0.0 0.262429221107517 3.8523952723810734E-4 76-77 7.096517607017767E-5 4.916872913433739E-4 0.0 0.2656885502655973 3.8523952723810734E-4 78-79 8.110305836591734E-5 4.967562324912437E-4 0.0 0.2690391203643393 3.8523952723810734E-4 80-81 8.110305836591734E-5 4.967562324912437E-4 0.0 0.270412803415412 3.9030846838597716E-4 82-83 8.110305836591734E-5 4.967562324912437E-4 0.0 0.27096024905938193 4.1565317412532634E-4 84-85 8.110305836591734E-5 5.068941147869833E-4 0.0 0.2712947991751413 4.1565317412532634E-4 86-87 8.110305836591734E-5 5.068941147869833E-4 0.0 0.2714164537626902 4.308599975689358E-4 88-89 8.110305836591734E-5 5.271698793784627E-4 0.0 0.2714823499976125 4.3592893871680565E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13130 0.0 50.451378 1 GTATCAA 24275 0.0 37.067074 1 ATCAACG 29945 0.0 29.361408 3 TCAACGC 30095 0.0 29.215063 4 CAACGCA 30540 0.0 28.81743 5 TATCAAC 31550 0.0 28.20755 2 AACGCAG 31450 0.0 28.038097 6 ACGCAGA 35710 0.0 24.669315 7 CGCAGAG 36390 0.0 24.208334 8 GCAGAGT 42110 0.0 20.696253 9 GTACATG 28660 0.0 19.734493 1 TACATGG 28375 0.0 19.41929 2 GAGTACT 25740 0.0 19.386475 12-13 AGAGTAC 38450 0.0 19.330622 10-11 ACATGGG 28125 0.0 18.967089 3 CAGAGTA 40990 0.0 18.587532 10-11 AGTACTT 28420 0.0 17.528177 12-13 CATGGGG 20765 0.0 17.436071 4 GTGGTAT 6820 0.0 17.277327 1 GTACTTT 29060 0.0 17.179491 14-15 >>END_MODULE