##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139027_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8080511 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.68894751829433 34.0 31.0 34.0 31.0 34.0 2 32.79094775070537 34.0 31.0 34.0 31.0 34.0 3 32.85937424006972 34.0 31.0 34.0 31.0 34.0 4 36.31113453097211 37.0 37.0 37.0 35.0 37.0 5 36.25497087993569 37.0 37.0 37.0 35.0 37.0 6 36.29286056290252 37.0 37.0 37.0 35.0 37.0 7 36.24319167438792 37.0 37.0 37.0 35.0 37.0 8 36.22295854804232 37.0 37.0 37.0 35.0 37.0 9 37.95859061388568 39.0 38.0 39.0 35.0 39.0 10-11 37.91760737656319 39.0 38.0 39.0 35.0 39.0 12-13 37.89309735485788 39.0 38.0 39.0 35.0 39.0 14-15 39.301210777387716 41.0 39.0 41.0 36.0 41.0 16-17 39.27332807293994 41.0 39.0 41.0 36.0 41.0 18-19 39.286937732032044 41.0 39.0 41.0 36.0 41.0 20-21 39.28240291733285 41.0 39.0 41.0 36.0 41.0 22-23 39.15336828772497 40.5 39.0 41.0 36.0 41.0 24-25 39.101550538507894 40.0 39.0 41.0 35.5 41.0 26-27 39.05135719292012 40.0 39.0 41.0 35.0 41.0 28-29 38.8636075955334 40.0 39.0 41.0 35.0 41.0 30-31 38.75344476781583 40.0 38.0 41.0 35.0 41.0 32-33 38.63981325704515 40.0 38.0 41.0 35.0 41.0 34-35 38.362153054447504 40.0 38.0 41.0 34.0 41.0 36-37 38.60646295829167 40.0 38.0 41.0 34.5 41.0 38-39 38.70751675889997 40.0 38.0 41.0 35.0 41.0 40-41 38.69853119468706 40.0 38.0 41.0 35.0 41.0 42-43 38.64312350329938 40.0 38.0 41.0 35.0 41.0 44-45 38.59242111906196 40.0 38.0 41.0 34.5 41.0 46-47 38.521352197582736 40.0 38.0 41.0 34.0 41.0 48-49 38.459275198111285 40.0 38.0 41.0 34.0 41.0 50-51 38.38804705070872 40.0 38.0 41.0 34.0 41.0 52-53 38.278813769785515 40.0 38.0 41.0 34.0 41.0 54-55 38.136689880679924 40.0 37.0 41.0 33.5 41.0 56-57 37.99523825882802 40.0 37.0 41.0 33.0 41.0 58-59 37.82748324127262 40.0 36.5 41.0 33.0 41.0 60-61 37.63025400468613 39.0 36.0 41.0 33.0 41.0 62-63 37.394868443764416 39.0 35.5 40.5 33.0 41.0 64-65 37.110590817920375 38.5 35.0 40.0 32.0 41.0 66-67 36.8231287696122 38.0 35.0 40.0 32.0 41.0 68-69 36.533022071249036 37.5 35.0 40.0 32.0 41.0 70-71 36.22305624790913 37.0 35.0 39.5 31.0 41.0 72-73 35.9177651666512 36.5 35.0 39.0 31.0 40.5 74-75 35.598480024044584 36.0 34.0 39.0 31.0 40.0 76-77 34.55413438709894 35.0 33.5 37.0 29.5 39.0 78-79 34.82881122629763 35.0 34.0 37.0 31.0 39.0 80-81 34.62804657070083 35.0 34.0 37.0 31.0 39.0 82-83 34.39078163965513 35.0 34.0 36.0 30.5 38.5 84-85 34.14303037526366 35.0 34.0 36.0 30.0 37.0 86-87 33.90347421714941 35.0 34.0 35.5 30.0 37.0 88-89 33.715706485996165 35.0 34.0 35.0 30.0 36.5 90-91 33.55715401215634 35.0 33.0 35.0 30.0 36.0 92-93 33.43501439204697 35.0 33.0 35.0 30.0 36.0 94-95 33.36418054552467 35.0 33.0 35.0 30.0 35.5 96-97 33.319316367830794 34.0 33.0 35.0 30.0 35.0 98-99 33.33465465299379 34.0 33.0 35.0 30.0 35.0 100-101 32.30389402649059 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 1.0 19 7.0 20 41.0 21 229.0 22 1112.0 23 3655.0 24 8982.0 25 18002.0 26 31688.0 27 48456.0 28 69126.0 29 92100.0 30 117655.0 31 148736.0 32 188376.0 33 245501.0 34 345269.0 35 504147.0 36 866544.0 37 1797458.0 38 2433164.0 39 1112051.0 40 48209.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.23437248816875 21.31582305025587 15.288628476250693 24.161175985324686 2 13.69442646874462 21.947556004050814 41.52233200702989 22.835685520174675 3 16.65680961434484 27.176394457329362 31.646385147272284 24.52041078105352 4 11.86878202845885 18.995164784792642 39.57323727997828 29.56281590677023 5 12.695821513223981 38.26126547226171 36.039338610971164 13.003574403543144 6 28.88570509605274 38.99722158591742 19.120565301022495 12.996508017007343 7 25.458111611533386 33.39672042936899 23.924136462195637 17.22103149690199 8 24.106732477759426 36.79371652899783 21.538624704257238 17.560926288985513 9 25.452251720219177 16.78054766585925 21.671277967445377 36.09592264647619 10-11 23.55922787556381 27.065540780774878 29.577993272950188 19.797238070711124 12-13 24.616135043934722 24.823194968734033 29.537723542483885 21.022946444847364 14-15 21.777768482372778 26.11759163096736 27.333154218029282 24.771485668630582 16-17 21.15540455916474 29.20818558629112 27.914791518878374 21.721618335665767 18-19 21.155801238709405 28.344452891384165 29.813878015327504 20.685867854578927 20-21 22.036918847814732 27.464811479527334 29.66913948221735 20.829130190440583 22-23 21.85317804441489 27.4540364121856 29.386997656605985 21.305787886793528 24-25 21.51875251505816 27.557126677471448 29.53837815493755 21.38574265253284 26-27 21.47814758242241 27.698698070974757 29.4740670914309 21.349087255171934 28-29 21.377146063101392 27.833303159048654 29.487285020656124 21.30226575719383 30-31 21.680780936865133 27.650844376567242 29.37685129430918 21.291523392258444 32-33 21.4678608199315 27.79561376992782 29.281904641570357 21.454620768570326 34-35 21.65430899932381 27.90425589867046 29.224650497746786 21.216784604258947 36-37 21.60671252464062 27.805515488658113 29.186023050963005 21.401748935738265 38-39 21.494242449889704 27.957567541661188 29.184506351073647 21.36368365737546 40-41 21.696845158276137 27.8556498903421 29.003375933462156 21.444129017919604 42-43 21.611470691387265 27.969876828731344 28.80417874884295 21.61447373103844 44-45 21.748021679200153 28.009723578789046 28.594116774604373 21.648137967406427 46-47 21.767527559213047 27.987824005248203 28.332474934907047 21.912173500631702 48-49 21.76935525127847 28.15424888690743 28.25143694316603 21.824958918648075 50-51 21.793523243842046 28.287464562652907 28.083763034208285 21.835249159296758 52-53 21.91968562976329 28.21642274566158 27.935528751624144 21.928362872950988 54-55 21.923772570212353 28.12397947891482 27.993366255016493 21.958881695856334 56-57 21.903060409076527 28.17762473376757 27.989434146680885 21.929880710475018 58-59 21.87243316961598 28.228792013249105 28.01927456348075 21.879500253654165 60-61 21.99345468501752 28.15362300299605 28.02878140618814 21.82414090579829 62-63 21.960219416342706 28.26130938212204 27.92516520827223 21.853305993263024 64-65 21.893505909749315 28.191173480164906 27.921118690019934 21.994201920065837 66-67 21.93270456442896 28.22623853291868 27.80936295816972 22.031693944482644 68-69 21.916070851251124 28.208358473653544 27.860578259201645 22.01499241589369 70-71 21.90497972774311 28.068397425050406 27.879744548375214 22.146878298831265 72-73 21.9468368657263 28.082001713378908 27.833206192358123 22.137955228536665 74-75 21.877242958194557 28.139630383451504 27.803837551940337 22.179289106413602 76-77 21.976212169435897 28.03754589639862 27.79153251679188 22.194709417373605 78-79 21.949159571524664 28.036771735109582 27.789445770673787 22.22462292269196 80-81 21.991943630679433 28.069744287025095 27.71388749486572 22.224424587429752 82-83 22.007071602845002 28.02110232970612 27.85540521195287 22.116420855496 84-85 22.12274245433965 27.957235412533198 27.777811304902244 22.142210828224908 86-87 21.929777588438455 28.009584906588415 27.881709464361432 22.178928040611698 88-89 22.01239810901913 27.898453812904773 27.878971759059073 22.210176319017023 90-91 22.033686786330144 27.913203562271484 27.883337279910403 22.16977237148797 92-93 22.105261502568982 27.765283746836467 27.97440932597287 22.15504542462168 94-95 21.935757546597344 27.818918001826663 28.003838719928726 22.241485731647266 96-97 21.90819804083412 27.89111919277969 28.034893328576587 22.165789437809604 98-99 22.129611972175738 28.446550500729234 28.07582123579809 21.348016291296933 100-101 22.657374674465018 31.140864031770555 25.292050956073375 20.909710337691052 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2225.0 1 1944.5 2 2451.5 3 3438.0 4 4658.0 5 7195.5 6 9289.0 7 10995.5 8 12218.5 9 12278.0 10 11443.5 11 10650.0 12 11826.0 13 15843.0 14 25681.5 15 39011.5 16 49469.0 17 55136.0 18 55714.5 19 52404.0 20 47813.0 21 43936.0 22 42468.5 23 45166.5 24 52194.0 25 63919.5 26 79327.5 27 96307.0 28 116380.0 29 137238.0 30 154915.5 31 173202.0 32 192567.5 33 211325.5 34 229987.5 35 245861.5 36 261588.5 37 277229.0 38 289704.5 39 299280.5 40 306485.5 41 314030.0 42 319983.0 43 324689.5 44 328505.0 45 331133.0 46 330908.5 47 327136.0 48 323590.0 49 318732.0 50 310891.5 51 299503.5 52 283587.5 53 265483.5 54 247547.0 55 227822.0 56 207602.0 57 186639.0 58 165152.0 59 142568.5 60 118092.5 61 95290.0 62 74940.0 63 57404.0 64 42870.5 65 32085.0 66 24314.5 67 18271.0 68 13900.0 69 10307.0 70 7414.5 71 5388.5 72 3849.5 73 2665.5 74 1756.0 75 1115.5 76 686.0 77 438.5 78 292.0 79 196.5 80 135.0 81 88.0 82 63.0 83 46.5 84 29.5 85 18.5 86 12.5 87 9.5 88 10.0 89 8.5 90 4.0 91 2.0 92 2.0 93 1.5 94 1.0 95 1.0 96 1.0 97 1.5 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.475090993626517E-5 2 0.0019553218849649484 3 2.475090993626517E-5 4 2.475090993626517E-5 5 2.475090993626517E-5 6 2.475090993626517E-5 7 2.475090993626517E-5 8 1.1137909471319327E-4 9 0.0 10-11 0.0 12-13 0.0 14-15 6.806500232472921E-4 16-17 0.0032052428367463394 18-19 4.950181987253034E-5 20-21 0.0 22-23 0.0010149014137762348 24-25 0.0055644644756912744 26-27 0.010092462435142772 28-29 0.36211210316729 30-31 0.33110399814837776 32-33 0.33399807662855063 34-35 0.1912643656373599 36-37 0.05189849738600539 38-39 0.0413744923860666 40-41 0.02779206412605055 42-43 0.03581279393700321 44-45 0.024281778439211362 46-47 0.018874907090402144 48-49 0.013478258582692075 50-51 0.008223792745566928 52-53 0.0063303768178525986 54-55 0.0015630761527332913 56-57 0.004912623587646199 58-59 0.008176859227931769 60-61 0.0066935454929101315 62-63 0.005929593541012348 64-65 0.001569611200970766 66-67 9.950814545247775E-5 68-69 7.899300294342291E-4 70-71 0.0010811559952095355 72-73 0.0018401805400394694 74-75 0.0021480087662459828 76-77 0.0010853633807826758 78-79 1.2865383513677E-4 80-81 0.003391476354825902 82-83 0.0016267334587932148 84-85 8.621253144602085E-5 86-87 2.379962996335333E-5 88-89 0.001462740072214352 90-91 0.0039532135142845495 92-93 0.01537561179708297 94-95 0.0018841639552369747 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 145.0 20-21 551.0 22-23 1124.0 24-25 2614.0 26-27 3626.0 28-29 6458.0 30-31 16855.0 32-33 22370.0 34-35 32760.0 36-37 43735.0 38-39 51604.0 40-41 55105.0 42-43 65609.0 44-45 78587.0 46-47 76980.0 48-49 67859.0 50-51 60540.0 52-53 57537.0 54-55 61846.0 56-57 63760.0 58-59 63636.0 60-61 64421.0 62-63 62686.0 64-65 67576.0 66-67 71945.0 68-69 71838.0 70-71 71576.0 72-73 69329.0 74-75 70308.0 76-77 72012.0 78-79 75252.0 80-81 76954.0 82-83 74938.0 84-85 76025.0 86-87 80307.0 88-89 85368.0 90-91 91735.0 92-93 94255.0 94-95 107237.0 96-97 156930.0 98-99 676906.0 100-101 5029612.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.87124908827387 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4337650531435 75.90355350727506 2 7.337469340056016 12.454803760749332 3 1.8148218885326246 4.62078601657512 4 0.6811626499387285 2.3124449973031416 5 0.28673218269495476 1.216765924956398 6 0.15260983308124326 0.7771312294054857 7 0.08847932184764577 0.5256545394585168 8 0.05561921802599217 0.37763780057431956 9 0.03628243237810044 0.2771401820301194 >10 0.1113923700230827 1.39382414188498 >50 0.001269769198834014 0.07227025698119233 >100 3.7270865315612226E-4 0.05779361762220871 >500 2.3232426141123525E-5 0.010194025184152296 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2375454968132585E-5 2 0.0 1.2375454968132585E-5 0.0 0.0 1.2375454968132585E-5 3 0.0 1.2375454968132585E-5 0.0 0.0 1.2375454968132585E-5 4 0.0 4.950181987253034E-5 0.0 0.0 1.2375454968132585E-5 5 0.0 4.950181987253034E-5 0.0 0.0 1.2375454968132585E-5 6 9.900363974506068E-5 4.950181987253034E-5 0.0 0.0 2.475090993626517E-5 7 9.900363974506068E-5 4.950181987253034E-5 0.0 0.0 2.475090993626517E-5 8 1.1137909471319327E-4 4.950181987253034E-5 0.0 0.0 2.475090993626517E-5 9 1.1137909471319327E-4 8.662818477692809E-5 0.0 3.712636490439775E-5 4.950181987253034E-5 10-11 1.1137909471319327E-4 8.662818477692809E-5 0.0 4.950181987253034E-5 4.950181987253034E-5 12-13 1.1137909471319327E-4 9.281591226099439E-5 0.0 4.950181987253034E-5 4.950181987253034E-5 14-15 1.1137909471319327E-4 1.2994227716539214E-4 0.0 6.187727484066293E-5 7.42527298087955E-5 16-17 1.7325636955385618E-4 1.3613000464945843E-4 0.0 6.187727484066293E-5 8.662818477692809E-5 18-19 1.7325636955385618E-4 1.3613000464945843E-4 0.0 8.044045729286179E-5 8.662818477692809E-5 20-21 1.7325636955385618E-4 1.3613000464945843E-4 0.0 8.662818477692809E-5 8.662818477692809E-5 22-23 1.7325636955385618E-4 1.3613000464945843E-4 0.0 2.8463546426704943E-4 8.662818477692809E-5 24-25 1.7325636955385618E-4 1.5469318710165732E-4 0.0 0.0010395382173231371 8.662818477692809E-5 26-27 1.7325636955385618E-4 1.7325636955385618E-4 0.0 0.0032176182917144722 8.662818477692809E-5 28-29 1.7325636955385618E-4 1.7944409703792247E-4 0.0 0.017548395144812004 8.662818477692809E-5 30-31 1.7325636955385618E-4 1.8563182452198878E-4 0.0 0.0248375381210421 8.662818477692809E-5 32-33 1.7325636955385618E-4 1.8563182452198878E-4 0.0 0.027591076851451596 8.662818477692809E-5 34-35 1.7325636955385618E-4 2.413213718785854E-4 0.0 0.03103764106007652 8.662818477692809E-5 36-37 1.8563182452198878E-4 3.0938637420331464E-4 0.0 0.03552993121350865 8.662818477692809E-5 38-39 1.8563182452198878E-4 3.465127391077124E-4 0.0 0.043524475122922304 8.662818477692809E-5 40-41 1.8563182452198878E-4 3.960145589802427E-4 0.0 0.05911754838276936 8.662818477692809E-5 42-43 1.8563182452198878E-4 4.2076546891650786E-4 0.0 0.06685220773785222 8.662818477692809E-5 44-45 1.9800727949012136E-4 4.3932865136870675E-4 0.0 0.07725377763856767 9.281591226099439E-5 46-47 2.1038273445825393E-4 4.5170410633683933E-4 0.0 0.09042126172466072 1.0519136722912697E-4 48-49 2.1657046194232025E-4 4.6407956130497196E-4 0.0 0.10169530120062951 1.2375454968132586E-4 50-51 2.2275818942638653E-4 5.197691086615686E-4 0.0 0.11311165840873183 1.2375454968132586E-4 52-53 2.2275818942638653E-4 5.197691086615686E-4 0.0 0.1278570130032618 1.48505459617591E-4 54-55 2.2275818942638653E-4 5.507077460819E-4 0.0 0.15509538938812162 1.7944409703792247E-4 56-57 2.351336443945191E-4 5.692709285340989E-4 0.0 0.18335474080785238 1.8563182452198878E-4 58-59 2.351336443945191E-4 5.692709285340989E-4 0.0 0.21261650408000188 1.8563182452198878E-4 60-61 2.5369682684671797E-4 5.692709285340989E-4 0.0 0.2310992460749079 1.8563182452198878E-4 62-63 3.217618291714472E-4 5.878341109862978E-4 0.0 0.24124093142129255 1.9800727949012136E-4 64-65 3.217618291714472E-4 6.063972934384966E-4 0.0 0.25139499222264533 1.9800727949012136E-4 66-67 3.4651273910771236E-4 6.682745682791596E-4 0.0 0.25820149245511825 1.9800727949012136E-4 68-69 3.4651273910771236E-4 6.99213205699491E-4 0.0 0.2641850249322103 1.9800727949012136E-4 70-71 3.5888819407584494E-4 7.177763881516899E-4 0.0 0.26982204467019477 1.9800727949012136E-4 72-73 4.083900139483753E-4 7.301518431198225E-4 0.0 0.27428339618620656 2.2275818942638653E-4 74-75 4.083900139483753E-4 7.301518431198225E-4 0.0 0.2779094044918694 2.2275818942638653E-4 76-77 4.1457774143244155E-4 7.61090480540154E-4 0.0 0.2813374055180421 2.2275818942638653E-4 78-79 4.2076546891650786E-4 7.672782080242203E-4 0.0 0.28435701653026646 2.2275818942638653E-4 80-81 4.2076546891650786E-4 7.672782080242203E-4 0.0 0.2855079338423028 2.2894591691045282E-4 82-83 4.269531964005742E-4 7.734659355082866E-4 0.0 0.28600913976851217 2.598845543307843E-4 84-85 4.3314092388464044E-4 7.796536629923528E-4 0.0 0.28632471387019953 2.598845543307843E-4 86-87 4.45516378852773E-4 7.920291179604854E-4 0.0 0.2863618402351039 2.598845543307843E-4 88-89 4.826427437571708E-4 8.167800278967506E-4 0.0 0.28636802796258803 2.7226000929891686E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10655 0.0 48.723896 1 GTATCAA 19795 0.0 38.67221 1 ATCAACG 24725 0.0 30.547306 3 TCAACGC 24780 0.0 30.462305 4 CAACGCA 25280 0.0 29.893528 5 TATCAAC 25715 0.0 29.487474 2 AACGCAG 25880 0.0 29.266356 6 ACGCAGA 29615 0.0 25.604113 7 CGCAGAG 30335 0.0 24.968298 8 GCAGAGT 34860 0.0 21.60542 9 GTACATG 24610 0.0 21.07789 1 TACATGG 24295 0.0 20.54415 2 ACATGGG 24805 0.0 19.692047 3 AGAGTAC 31970 0.0 19.526505 10-11 GAGTACT 21135 0.0 19.392097 12-13 CAGAGTA 34325 0.0 18.317205 10-11 AGTACTT 23020 0.0 17.841204 12-13 GTGGTAT 5245 0.0 17.390676 1 GTACTTT 23600 0.0 17.340214 14-15 CATGGGG 17820 0.0 17.173635 4 >>END_MODULE