##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139025_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13669357 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61422874536088 34.0 31.0 34.0 31.0 34.0 2 32.73853605549991 34.0 31.0 34.0 31.0 34.0 3 32.805681642523496 34.0 31.0 34.0 31.0 34.0 4 36.28090809245819 37.0 37.0 37.0 35.0 37.0 5 36.21947894110893 37.0 37.0 37.0 35.0 37.0 6 36.257466170500926 37.0 37.0 37.0 35.0 37.0 7 36.2056131828293 37.0 37.0 37.0 35.0 37.0 8 36.18462689942182 37.0 37.0 37.0 35.0 37.0 9 37.90703564183743 39.0 38.0 39.0 35.0 39.0 10-11 37.86373938437631 39.0 38.0 39.0 35.0 39.0 12-13 37.83558297584882 39.0 38.0 39.0 35.0 39.0 14-15 39.22316148447948 41.0 39.0 41.0 36.0 41.0 16-17 39.194493932669985 40.5 39.0 41.0 36.0 41.0 18-19 39.20643692311204 40.0 39.0 41.0 36.0 41.0 20-21 39.20088956018611 40.0 39.0 41.0 36.0 41.0 22-23 39.07000851285435 40.0 39.0 41.0 35.5 41.0 24-25 39.017029976038685 40.0 38.5 41.0 35.0 41.0 26-27 38.96367197757296 40.0 38.5 41.0 35.0 41.0 28-29 38.77472224632295 40.0 38.0 41.0 35.0 41.0 30-31 38.66371648255354 40.0 38.0 41.0 35.0 41.0 32-33 38.55001014042863 40.0 38.0 41.0 34.5 41.0 34-35 38.26791988661641 40.0 38.0 41.0 34.0 41.0 36-37 38.516795903537314 40.0 38.0 41.0 34.0 41.0 38-39 38.618240484004104 40.0 38.0 41.0 35.0 41.0 40-41 38.61073586313765 40.0 38.0 41.0 35.0 41.0 42-43 38.55277789223872 40.0 38.0 41.0 34.0 41.0 44-45 38.50410393896064 40.0 38.0 41.0 34.0 41.0 46-47 38.43315325168309 40.0 38.0 41.0 34.0 41.0 48-49 38.373136768505574 40.0 38.0 41.0 34.0 41.0 50-51 38.29953266282888 40.0 38.0 41.0 34.0 41.0 52-53 38.1897783560488 40.0 37.5 41.0 33.5 41.0 54-55 38.047440566367314 40.0 37.0 41.0 33.0 41.0 56-57 37.9072437247641 40.0 37.0 41.0 33.0 41.0 58-59 37.74294480331839 39.5 36.0 41.0 33.0 41.0 60-61 37.544268722835 39.0 36.0 41.0 33.0 41.0 62-63 37.30859893148006 39.0 35.5 40.0 32.5 41.0 64-65 37.02396080404049 38.5 35.0 40.0 32.0 41.0 66-67 36.737355585037 38.0 35.0 40.0 32.0 41.0 68-69 36.44930569582884 37.5 35.0 40.0 31.0 41.0 70-71 36.13797251507088 37.0 35.0 39.5 31.0 41.0 72-73 35.8342821966494 36.5 34.5 39.0 31.0 40.5 74-75 35.5175521035882 36.0 34.0 39.0 31.0 40.0 76-77 34.473994048965295 35.0 33.5 37.0 29.5 39.0 78-79 34.76044043396389 35.0 34.0 37.0 30.0 39.0 80-81 34.56284606676978 35.0 34.0 37.0 30.0 39.0 82-83 34.32325211661242 35.0 34.0 36.0 30.0 38.5 84-85 34.071825417792056 35.0 34.0 36.0 30.0 37.0 86-87 33.829715731480206 35.0 34.0 35.5 30.0 37.0 88-89 33.63662719655302 35.0 33.0 35.0 30.0 36.5 90-91 33.47203337368654 35.0 33.0 35.0 30.0 36.0 92-93 33.347403862256996 35.0 33.0 35.0 30.0 36.0 94-95 33.27771501855282 34.5 33.0 35.0 29.5 35.5 96-97 33.23583269190917 34.0 33.0 35.0 29.5 35.0 98-99 33.252938122992944 34.0 33.0 35.0 30.0 35.0 100-101 32.211749433570056 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 0.0 16 0.0 17 1.0 18 2.0 19 19.0 20 86.0 21 446.0 22 1955.0 23 6426.0 24 15599.0 25 32010.0 26 55167.0 27 85978.0 28 122855.0 29 164496.0 30 210322.0 31 264052.0 32 334328.0 33 434990.0 34 611017.0 35 887852.0 36 1534412.0 37 3097399.0 38 4015825.0 39 1723801.0 40 70317.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.64446703187291 21.665391063835205 15.443882717500767 24.246259186791125 2 13.56612308171771 22.20193238340699 41.44500052307645 22.786944011798848 3 16.63587271730218 27.28502419134426 31.59839617854599 24.48070691280757 4 11.818745188598173 19.24448070073251 39.5375479731923 29.399226137477026 5 12.667197001409136 38.277163646504434 36.052515722396244 13.00312362969018 6 28.70184438109918 39.12973216366098 19.1512474436431 13.017176011596742 7 25.41565421338461 33.29042957769405 23.979112401426402 17.31480380749494 8 23.95334993641614 37.014169438500694 21.57341948032785 17.45906114475532 9 25.262492249086204 16.88113909682358 21.759042635219977 36.09732601887024 10-11 23.579243705464712 27.211214104657593 29.471214337294725 19.73832785258297 12-13 24.563141485001818 24.91034508792184 29.488921827120322 21.037591599956016 14-15 21.73246442102428 26.14521539860915 27.290075072387715 24.832245107978853 16-17 21.107852272366053 29.304265179415918 27.89127747246969 21.69660507574834 18-19 21.154101005318505 28.433353759811318 29.72426742033335 20.68827781453682 20-21 21.99576515058238 27.50255450980444 29.667085937682323 20.834594401930858 22-23 21.817681967205917 27.492535325961704 29.375861062314023 21.31392164451836 24-25 21.499053328196403 27.658993678523697 29.49130665737345 21.350646335906447 26-27 21.460874036938286 27.792580626881662 29.448163826027823 21.298381510152222 28-29 21.404489463120093 27.885270305030986 29.447546658368285 21.26269357348064 30-31 21.6606607230787 27.738589795493805 29.3486596944869 21.2520897869406 32-33 21.5144007305907 27.784375170165347 29.291338303995673 21.409885795248275 34-35 21.62012885236181 27.890865025507956 29.25341469097107 21.235591431159172 36-37 21.62695023266804 27.872270899749225 29.169307382088956 21.33147148549378 38-39 21.507852211784908 27.950030340498238 29.200124392505938 21.34199305521092 40-41 21.66813600778893 27.823761186586243 29.066740605770157 21.44136219985467 42-43 21.618334752291037 27.97009204679206 28.793679927289595 21.617893273627306 44-45 21.67507897865388 28.068212802618298 28.63465085961933 21.62205735910849 46-47 21.774672805484542 28.03427111545543 28.34286246326506 21.84819361579497 48-49 21.78198872748298 28.221917767067122 28.190432934687177 21.805660570762726 50-51 21.811615722920443 28.260855184498922 28.12391415470786 21.80361493787277 52-53 21.91642004759148 28.223677995201406 28.02459846535713 21.835303491849984 54-55 21.901029943593294 28.173030396462533 27.990503262073744 21.935436397870433 56-57 21.93020635233135 28.258119750426168 27.9481268272623 21.86354706998018 58-59 21.820720412002302 28.32424419888815 28.018871441931214 21.83616394717834 60-61 21.961189703372042 28.31752579657752 27.939072517998632 21.78221198205181 62-63 21.934618105707866 28.368838855953655 27.910630302658753 21.785912735679723 64-65 21.91514948351892 28.24831769764889 27.905987982742264 21.930544836089926 66-67 21.949940948726397 28.236642635438642 27.81384138383663 21.99957503199833 68-69 21.91868757406019 28.214604891666266 27.895215230182984 21.971492304090557 70-71 21.8829149490347 28.095689135784646 27.92034783608308 22.10104807909757 72-73 21.97016050788397 28.124021747079425 27.861101054857667 22.044716690178934 74-75 21.892133617958297 28.17123166144596 27.854368181917533 22.082266538678212 76-77 21.94210911568022 28.12429261399096 27.802390109677006 22.131208160651813 78-79 21.924084542196148 28.090110121456696 27.81704158798128 22.168763748365876 80-81 21.960482779123094 28.107567483871993 27.828230513412667 22.103719223592247 82-83 22.023119646258632 28.02229461183625 27.925191532520348 22.02939420938477 84-85 22.07261204428506 28.028243010236586 27.86052841734326 22.03861652813509 86-87 21.948440625632326 28.04442739943379 27.86862818211323 22.13850379282065 88-89 22.019415760150586 27.940424128572833 27.87101328212998 22.1691468291466 90-91 22.072269026898724 27.980136495832713 27.869863547287576 22.07773092998099 92-93 22.12736109705889 27.86150954556421 27.94791285635346 22.063216501023433 94-95 21.879093104871068 27.93293916290649 28.018189424420363 22.16977830780208 96-97 21.896039752839883 27.989818883545986 28.00035221943835 22.113789144175776 98-99 22.10979517558381 28.536619882356433 28.065241894865423 21.28834304719433 100-101 22.642550291091474 31.246412646446704 25.270964698296922 20.8400723641649 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3244.0 1 2954.5 2 4173.5 3 5965.0 4 7956.5 5 11922.0 6 15112.0 7 18076.0 8 20397.0 9 20391.0 10 18605.5 11 17098.5 12 19287.0 13 26653.5 14 43848.0 15 66950.0 16 84524.5 17 93291.0 18 93631.5 19 87772.0 20 79649.0 21 72135.0 22 69162.0 23 73976.0 24 85547.5 25 104972.5 26 130452.0 27 158615.0 28 192334.5 29 228516.0 30 262529.5 31 296233.0 32 329163.0 33 360875.5 34 391028.0 35 417746.0 36 444862.5 37 470195.0 38 491767.5 39 509716.0 40 524051.0 41 535343.5 42 541374.0 43 546604.0 44 552107.0 45 558465.5 46 562052.5 47 562548.0 48 557084.5 49 542400.0 50 525794.5 51 506929.0 52 478816.5 53 444603.0 54 412624.5 55 381201.0 56 348023.0 57 311294.0 58 272175.0 59 231735.5 60 192183.5 61 157157.5 62 124790.5 63 96282.5 64 73250.5 65 54598.5 66 41355.0 67 31077.5 68 22250.0 69 15952.0 70 11565.0 71 8489.0 72 5867.5 73 3889.5 74 2709.5 75 1884.5 76 1243.5 77 739.5 78 489.5 79 358.5 80 224.0 81 135.5 82 95.5 83 62.0 84 45.5 85 36.0 86 28.0 87 25.0 88 17.5 89 10.0 90 6.5 91 5.0 92 4.0 93 2.5 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.194689918479706E-5 2 0.0016606487049829774 3 3.6578165307995104E-5 4 2.9262532246396085E-5 5 2.194689918479706E-5 6 1.4631266123198042E-5 7 1.4631266123198042E-5 8 5.852506449279217E-5 9 7.315633061599021E-6 10-11 0.0 12-13 0.0 14-15 6.108553606435182E-4 16-17 0.0027616514807536304 18-19 5.486724796199265E-5 20-21 0.0 22-23 0.001064541544209331 24-25 0.005224964543968717 26-27 0.009864474564461486 28-29 0.36039798849269683 30-31 0.3289758938623739 32-33 0.3319383881256185 34-35 0.1877083775265303 36-37 0.0468204537735354 38-39 0.03702258202587882 40-41 0.022454671247694277 42-43 0.029838070563981405 44-45 0.019034072206943975 46-47 0.014448355335909463 48-49 0.00903089108077839 50-51 0.004826072345055483 52-53 0.003715666032939182 54-55 5.843696386818672E-4 56-57 0.0032350433363519055 58-59 0.005665139316531875 60-61 0.004503202352009536 62-63 0.003620607262238732 64-65 6.184667959082403E-4 66-67 6.705604997285069E-5 68-69 7.535613818927159E-4 70-71 0.0010776958861953144 72-73 0.0017666824933773163 74-75 0.002080939743663124 76-77 9.519870614380716E-4 78-79 8.90924274688525E-5 80-81 0.0031488951702615276 82-83 0.0014809025540602338 84-85 6.4525070363437E-5 86-87 1.8657877313821672E-5 88-89 0.0015449592350457984 90-91 0.003880675271992218 92-93 0.014605148142065146 94-95 0.0015519577155775532 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 233.0 20-21 854.0 22-23 1965.0 24-25 4706.0 26-27 7287.0 28-29 11818.0 30-31 27056.0 32-33 36174.0 34-35 51482.0 36-37 71783.0 38-39 84825.0 40-41 90918.0 42-43 109245.0 44-45 129390.0 46-47 128967.0 48-49 112977.0 50-51 99432.0 52-53 97263.0 54-55 103486.0 56-57 107553.0 58-59 107397.0 60-61 105899.0 62-63 105352.0 64-65 112826.0 66-67 120139.0 68-69 119144.0 70-71 117437.0 72-73 113927.0 74-75 116054.0 76-77 118418.0 78-79 124615.0 80-81 126608.0 82-83 124374.0 84-85 127452.0 86-87 134370.0 88-89 143526.0 90-91 155174.0 92-93 159146.0 94-95 180294.0 96-97 269183.0 98-99 1152641.0 100-101 8557967.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.90431322949567 #Duplication Level Percentage of deduplicated Percentage of total 1 88.44183176857287 73.32209323532128 2 7.73469427174497 12.824790332782621 3 2.0732635531322248 5.156474730485133 4 0.8032407219198062 2.663684816349034 5 0.37488925988524385 1.5539968313950034 6 0.18794122767744142 0.9348683044863939 7 0.11513889442420686 0.6681857677769596 8 0.07333757529743358 0.4864001051160126 9 0.04709950053077823 0.3514276570460793 >10 0.1453613835021995 1.8127505255499 >50 0.0027280480011196862 0.15434077114994793 >100 4.430472549864544E-4 0.05700533252842205 >500 3.074805671916055E-5 0.013981590013182311 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.31563306159902E-6 2 0.0 5.120943143119314E-5 0.0 0.0 7.31563306159902E-6 3 0.0 5.852506449279216E-5 0.0 0.0 7.31563306159902E-6 4 0.0 1.2436576204718334E-4 0.0 0.0 7.31563306159902E-6 5 0.0 1.2436576204718334E-4 0.0 0.0 7.31563306159902E-6 6 0.0 1.3168139510878236E-4 0.0 0.0 7.31563306159902E-6 7 7.31563306159902E-6 1.3168139510878236E-4 0.0 0.0 1.463126612319804E-5 8 7.31563306159902E-6 1.4631266123198042E-4 0.0 0.0 1.463126612319804E-5 9 7.31563306159902E-6 2.1946899184797062E-4 0.0 0.0 1.463126612319804E-5 10-11 7.31563306159902E-6 2.1946899184797062E-4 0.0 0.0 1.463126612319804E-5 12-13 7.31563306159902E-6 2.3044244144036915E-4 0.0 0.0 1.463126612319804E-5 14-15 7.31563306159902E-6 3.292034877719559E-4 0.0 0.0 1.8289082653997552E-5 16-17 7.31563306159902E-6 3.548082034875525E-4 0.0 0.0 2.1946899184797062E-5 18-19 7.31563306159902E-6 4.0601763491874567E-4 0.0 0.0 3.6578165307995104E-5 20-21 7.31563306159902E-6 4.5722706634993877E-4 0.0 0.0 5.852506449279216E-5 22-23 1.0973449592398531E-5 5.2306776390433E-4 0.0 0.0 5.852506449279216E-5 24-25 2.926253224639608E-5 6.071975441127187E-4 0.0 0.0 5.852506449279216E-5 26-27 3.6578165307995104E-5 6.510913424823128E-4 0.0 1.0973449592398531E-5 5.852506449279216E-5 28-29 3.6578165307995104E-5 6.584069755439118E-4 0.0 1.6825956041677747E-4 6.94985140851907E-5 30-31 4.023598183879462E-5 6.949851408519069E-4 0.0 7.059585904443054E-4 8.047196367758922E-5 32-33 4.3893798369594123E-5 6.949851408519069E-4 0.0 0.00179233010009176 8.047196367758922E-5 34-35 4.3893798369594123E-5 8.266665359606892E-4 0.0 0.0034676100711979354 8.047196367758922E-5 36-37 4.3893798369594123E-5 9.620057476002711E-4 0.0 0.006141473955212378 8.778759673918825E-5 38-39 4.3893798369594123E-5 0.0010278464451546623 0.0 0.010388198947470608 8.778759673918825E-5 40-41 4.3893798369594123E-5 0.0011266074914862492 0.0 0.014920233629131203 8.778759673918825E-5 42-43 4.3893798369594123E-5 0.0011522122072018456 0.0 0.01935350726446021 9.144541326998776E-5 44-45 5.120943143119314E-5 0.0013131561345570242 0.0 0.024258639232262354 9.510322980078726E-5 46-47 7.681414714678971E-5 0.0014375218966042075 0.0 0.029774626560708013 9.510322980078726E-5 48-49 8.047196367758922E-5 0.0014521531627274056 0.0 0.03541863746773166 9.510322980078726E-5 50-51 8.047196367758922E-5 0.0016130970900825842 0.0 0.04097120296148531 9.510322980078726E-5 52-53 8.047196367758922E-5 0.0016313861727365816 0.0 0.04635916671135299 9.510322980078726E-5 54-55 8.047196367758922E-5 0.001649675255390579 0.0 0.05184223369102146 9.876104633158677E-5 56-57 9.510322980078726E-5 0.0016825956041677747 0.0 0.05792884039827184 1.060766793931858E-4 58-59 1.0973449592398531E-4 0.0016935690537601732 0.0 0.06362771855325748 1.0973449592398531E-4 60-61 1.0973449592398531E-4 0.0017484363017221658 0.0 0.0693339123413047 1.1339231245478481E-4 62-63 1.1705012898558432E-4 0.0017667253843761635 0.0 0.07462311504484082 1.2436576204718334E-4 64-65 1.1705012898558432E-4 0.002077639789494122 0.0 0.08021957433696406 1.2436576204718334E-4 66-67 1.2070794551638384E-4 0.002106902321740518 0.0 0.08602818698787368 1.2802357857798284E-4 68-69 1.2436576204718334E-4 0.002143480487048513 0.0 0.0917819323908213 1.389970281703814E-4 70-71 1.2436576204718334E-4 0.0021983477350105054 0.0 0.09732352443498257 1.4631266123198042E-4 72-73 1.2436576204718334E-4 0.0022276102672569016 0.0 0.1016287744917336 1.4997047776277992E-4 74-75 1.3168139510878236E-4 0.0022971087813420926 0.0 0.10519880342579391 1.6094392735517844E-4 76-77 1.3168139510878236E-4 0.0023995276442044786 0.0 0.10814700354961831 1.6825956041677747E-4 78-79 1.3168139510878236E-4 0.0024470792591048725 0.0 0.11106594114119633 1.71917376947577E-4 80-81 1.3168139510878236E-4 0.002450737075635672 0.0 0.11228765186248336 1.9020645960157452E-4 82-83 1.3168139510878236E-4 0.002469026158289669 0.0 0.1127777992776105 2.0483772572477257E-4 84-85 1.3168139510878236E-4 0.0025019465070668647 0.0 0.11304847770088966 2.0483772572477257E-4 86-87 1.389970281703814E-4 0.002531209039313261 0.0 0.11315821219681364 2.158111753171711E-4 88-89 1.389970281703814E-4 0.00268849515013764 0.0 0.11317284346293685 2.4141589103276768E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 18215 0.0 50.53243 1 GTATCAA 32955 0.0 37.175865 1 ATCAACG 41920 0.0 28.787516 3 TCAACGC 41960 0.0 28.760073 4 CAACGCA 43000 0.0 28.044632 5 TATCAAC 43470 0.0 27.937948 2 AACGCAG 44205 0.0 27.376684 6 ACGCAGA 50755 0.0 23.81006 7 CGCAGAG 52385 0.0 23.077337 8 GTACATG 41035 0.0 20.049421 1 GCAGAGT 59895 0.0 20.034437 9 TACATGG 41175 0.0 19.608156 2 GAGTACT 36270 0.0 19.272701 12-13 ACATGGG 41490 0.0 18.934612 3 AGAGTAC 55080 0.0 18.804081 10-11 GTGGTAT 9135 0.0 18.732038 1 CAGAGTA 58795 0.0 17.859085 10-11 TGGTATC 9270 0.0 17.35445 2 AGTACTT 39600 0.0 17.204815 12-13 GTACTTT 41015 0.0 17.028225 14-15 >>END_MODULE