##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139024_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 12237835 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.66275325660135 34.0 31.0 34.0 31.0 34.0 2 32.7727071822753 34.0 31.0 34.0 31.0 34.0 3 32.84004090592821 34.0 31.0 34.0 31.0 34.0 4 36.30191712831559 37.0 37.0 37.0 35.0 37.0 5 36.24523046764399 37.0 37.0 37.0 35.0 37.0 6 36.282147209861876 37.0 37.0 37.0 35.0 37.0 7 36.23175455462506 37.0 37.0 37.0 35.0 37.0 8 36.21004867282489 37.0 37.0 37.0 35.0 37.0 9 37.9391881815697 39.0 38.0 39.0 35.0 39.0 10-11 37.89695366868405 39.0 38.0 39.0 35.0 39.0 12-13 37.87086633379188 39.0 38.0 39.0 35.0 39.0 14-15 39.2690675270585 41.0 39.0 41.0 36.0 41.0 16-17 39.24392611111361 41.0 39.0 41.0 36.0 41.0 18-19 39.259394370000905 41.0 39.0 41.0 36.0 41.0 20-21 39.254092270058855 41.0 39.0 41.0 36.0 41.0 22-23 39.12497298681805 40.0 39.0 41.0 35.5 41.0 24-25 39.07338189116672 40.0 39.0 41.0 35.0 41.0 26-27 39.02092113168713 40.0 39.0 41.0 35.0 41.0 28-29 38.82831018925462 40.0 38.5 41.0 35.0 41.0 30-31 38.71627817560441 40.0 38.0 41.0 35.0 41.0 32-33 38.60233231172967 40.0 38.0 41.0 35.0 41.0 34-35 38.32599667809427 40.0 38.0 41.0 34.0 41.0 36-37 38.573484502891226 40.0 38.0 41.0 34.5 41.0 38-39 38.676539298910896 40.0 38.0 41.0 35.0 41.0 40-41 38.66740709686613 40.0 38.0 41.0 35.0 41.0 42-43 38.611348932456764 40.0 38.0 41.0 34.5 41.0 44-45 38.56238891359063 40.0 38.0 41.0 34.0 41.0 46-47 38.49538535139781 40.0 38.0 41.0 34.0 41.0 48-49 38.43397299349542 40.0 38.0 41.0 34.0 41.0 50-51 38.362841385504375 40.0 38.0 41.0 34.0 41.0 52-53 38.25656268454876 40.0 37.5 41.0 34.0 41.0 54-55 38.11893997343406 40.0 37.0 41.0 33.0 41.0 56-57 37.98228090108595 40.0 37.0 41.0 33.0 41.0 58-59 37.8190586195044 40.0 36.5 41.0 33.0 41.0 60-61 37.62686266504073 39.0 36.0 41.0 33.0 41.0 62-63 37.39673943874281 39.0 35.5 40.5 33.0 41.0 64-65 37.11675535548481 38.5 35.0 40.0 32.0 41.0 66-67 36.83540785128737 38.0 35.0 40.0 32.0 41.0 68-69 36.54926487472481 37.5 35.0 40.0 32.0 41.0 70-71 36.243938977139074 37.0 35.0 39.5 31.0 41.0 72-73 35.9415087110595 36.5 35.0 39.0 31.0 40.5 74-75 35.62733546664051 36.0 34.0 39.0 31.0 40.0 76-77 34.58245940912741 35.0 33.5 37.0 29.5 39.0 78-79 34.85981741464135 35.0 34.0 37.0 30.5 39.0 80-81 34.65885353492055 35.0 34.0 37.0 31.0 39.0 82-83 34.41758656790745 35.0 34.0 36.5 30.0 38.5 84-85 34.163855564679054 35.0 34.0 36.0 30.0 37.0 86-87 33.91536888360992 35.0 34.0 35.5 30.0 37.0 88-89 33.720530038965975 35.0 33.5 35.0 30.0 36.5 90-91 33.55239767823251 35.0 33.0 35.0 30.0 36.0 92-93 33.426198110028636 35.0 33.0 35.0 30.0 36.0 94-95 33.3516252399724 35.0 33.0 35.0 30.0 36.0 96-97 33.30508664825766 34.0 33.0 35.0 30.0 35.0 98-99 33.31397549917607 34.0 33.0 35.0 30.0 35.0 100-101 32.29087081622999 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 8.0 20 69.0 21 392.0 22 1643.0 23 5389.0 24 13401.0 25 26775.0 26 47110.0 27 73406.0 28 105517.0 29 140936.0 30 182049.0 31 229828.0 32 291735.0 33 379552.0 34 536558.0 35 774063.0 36 1323424.0 37 2714324.0 38 3667664.0 39 1653314.0 40 70673.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.057372330542506 21.547679233733618 15.326749433498563 24.068199002225313 2 13.591145403902818 22.102578425775857 41.65291263286282 22.653363537458503 3 16.578147454700517 27.431604925479864 31.735479639246588 24.254767980573032 4 11.76749184271431 19.147654654218602 39.79915398420619 29.2856995188609 5 12.54194267890402 38.47145977559916 36.11271701452373 12.87388053097309 6 28.596696817157092 39.27924984758331 19.202599022228853 12.921454313030747 7 25.239313201936973 33.54540791658131 24.087867517067767 17.127411364413945 8 23.92246171194636 37.089057900403056 21.613293211824814 17.375187175825772 9 25.410090918859424 16.80654298738298 21.812689907978005 35.970676185779595 10-11 23.520185555696738 27.272340246456995 29.605060862480986 19.60241333536528 12-13 24.513563877924486 25.02849155916876 29.639029289085855 20.818915273820902 14-15 21.69353720409294 26.293425762065958 27.48276174555901 24.530275288282088 16-17 20.985700700409296 29.38414033109329 28.097291212759156 21.53286775573826 18-19 21.022626894678844 28.49498759011609 30.002538849629012 20.47984666557606 20-21 21.91069298041431 27.61742683737663 29.87166517881968 20.600215003389383 22-23 21.6963525246164 27.502334437202453 29.66334988347019 21.137963154710953 24-25 21.364791786756562 27.731590640694836 29.73840032270027 21.165217249848332 26-27 21.32650131232673 27.85689394553384 29.658817132077242 21.15778761006219 28-29 21.27072279206547 27.984967373079574 29.632418255307297 21.111891579547663 30-31 21.52144450582132 27.777006285826 29.568447585629066 21.13310162272361 32-33 21.375335618311805 27.90155259340608 29.474545974925864 21.248565813356247 34-35 21.481267442117076 27.998070345755842 29.444127166607164 21.07653504551992 36-37 21.448880363212773 27.992253598403398 29.40287265081057 21.155993387573254 38-39 21.35693439124008 28.053573612871997 29.438989085080525 21.1505029108074 40-41 21.555448138412025 27.97124280579401 29.248599037087946 21.224710018706013 42-43 21.478695854343226 28.08772153921193 29.015778022568217 21.417804583876627 44-45 21.63762202059834 28.17264612321208 28.75542859514566 21.43430326104392 46-47 21.646576916674274 28.20266672394628 28.502903539343038 21.64785282003641 48-49 21.635234959598648 28.372860447627225 28.369312607760754 21.62259198501337 50-51 21.626382404662223 28.44685627400267 28.252595544656522 21.674165776678585 52-53 21.762518323305642 28.36698715822702 28.118809638203107 21.75168488026423 54-55 21.793300274391644 28.270449657097057 28.166290272763362 21.769959795747937 56-57 21.794244791708653 28.37723161622247 28.08244607907155 21.746077512997328 58-59 21.7449447675213 28.455245442425582 28.14233178604249 21.657478004010624 60-61 21.850187017828823 28.353267733551107 28.1520338801055 21.644511368514575 62-63 21.837726390414478 28.412057028325478 28.048243696769788 21.701972884490257 64-65 21.791997959695838 28.38734418307578 28.054020055329904 21.766637801898476 66-67 21.866730686105228 28.395567542518812 27.912578107877618 21.825123663498342 68-69 21.830020487573844 28.308794184094584 28.050099481250363 21.81108584708122 70-71 21.76827778812086 28.182301996084448 28.06790162588956 21.98151858990513 72-73 21.87264826407867 28.194215583496423 28.038660792282638 21.89447536014227 74-75 21.728053746126417 28.285042250643365 28.032778910191237 21.954125093038982 76-77 21.818219167526358 28.242345743275543 27.962726926754396 21.9767081624437 78-79 21.820784357743896 28.234579208092903 27.946432385128173 21.998204049035024 80-81 21.8193412276614 28.201859363684918 27.999280957911125 21.979518450742553 82-83 21.818529398496334 28.18531125775599 28.09136250633505 21.904796837412626 84-85 21.983553395202836 28.14462291983241 27.970727337131663 21.901096347833093 86-87 21.797376595922692 28.188326378602184 28.02267951788735 21.991617507587772 88-89 21.882743392892824 28.095189994587095 28.034067057854866 21.987999554665212 90-91 21.913098156881937 28.103535036928363 28.030044620745027 21.95332218544468 92-93 21.95936804273296 28.000888535421296 28.082359297879222 21.95738412396652 94-95 21.784226892087784 28.07051988861304 28.14620169261347 21.99905152668571 96-97 21.760766208584414 28.099978642605723 28.171609524881593 21.967645623928274 98-99 22.033162464723468 28.69546356700709 28.15279879703584 21.118575171233605 100-101 22.54882640334942 31.416964920420416 25.38567993984869 20.64852873638148 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2791.0 1 2619.5 2 3874.0 3 5650.5 4 7654.0 5 11597.5 6 14798.5 7 17651.0 8 19914.0 9 20065.0 10 18435.0 11 16673.0 12 18192.0 13 24584.0 14 40136.5 15 61366.0 16 77875.0 17 86164.0 18 86795.5 19 81825.0 20 74312.0 21 67059.0 22 63975.5 23 68624.5 24 80620.5 25 100074.5 26 125377.0 27 153803.5 28 184164.5 29 216325.5 30 246402.5 31 276062.5 32 306220.0 33 333833.0 34 361008.0 35 384467.0 36 408697.0 37 431535.5 38 446414.0 39 456371.5 40 468733.0 41 481695.0 42 487320.5 43 489325.5 44 490527.5 45 491354.0 46 487626.5 47 481292.5 48 474230.5 49 462509.5 50 448905.5 51 432161.5 52 411824.0 53 388640.0 54 363198.0 55 335305.0 56 305566.5 57 275335.5 58 243120.5 59 209035.5 60 173316.0 61 140054.0 62 110637.0 63 84599.5 64 62988.5 65 47220.0 66 36316.5 67 27761.5 68 21110.0 69 15290.0 70 10706.0 71 7696.0 72 5460.0 73 3772.0 74 2601.5 75 1753.0 76 1155.5 77 724.0 78 448.0 79 298.5 80 201.0 81 135.0 82 96.0 83 67.0 84 43.0 85 28.0 86 20.5 87 16.0 88 14.5 89 10.5 90 6.0 91 4.0 92 3.0 93 2.0 94 1.5 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.63427599734757E-5 2 0.0017405039371751621 3 1.63427599734757E-5 4 1.63427599734757E-5 5 1.63427599734757E-5 6 1.63427599734757E-5 7 1.63427599734757E-5 8 8.17137998673785E-5 9 0.0 10-11 0.0 12-13 0.0 14-15 6.700531589125037E-4 16-17 0.002839554545391403 18-19 7.354241988064065E-5 20-21 0.0 22-23 0.0011277742019526512 24-25 0.00552572016338966 26-27 0.01047118320976642 28-29 0.36520503916184166 30-31 0.3341573979198117 32-33 0.33655249301867746 34-35 0.19036661279711742 36-37 0.04705583715422569 38-39 0.03698618319095219 40-41 0.023236380480770882 42-43 0.030710220308217327 44-45 0.019455891504153 46-47 0.014750188125033314 48-49 0.008925186768640467 50-51 0.0046928285663365 52-53 0.00334071419621513 54-55 5.996090815281362E-4 56-57 0.0030229595795372237 58-59 0.005564607326844393 60-61 0.004099951160470677 62-63 0.003316889920463093 64-65 3.8922802182271777E-4 66-67 9.354088059197908E-5 68-69 7.887403396429255E-4 70-71 0.0011495714578865228 72-73 0.0019509603710813335 74-75 0.0020869485013593624 76-77 9.140677084352036E-4 78-79 1.0430014083995686E-4 80-81 0.00304865354734446 82-83 0.0014173649559816738 84-85 5.6519629138746185E-5 86-87 1.559958891963279E-5 88-89 0.0014324660208000386 90-91 0.0034706904463425382 92-93 0.01531068966337674 94-95 0.0015530444821128101 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 205.0 20-21 794.0 22-23 1765.0 24-25 4943.0 26-27 6736.0 28-29 10887.0 30-31 24518.0 32-33 32846.0 34-35 46192.0 36-37 63979.0 38-39 76304.0 40-41 81873.0 42-43 98065.0 44-45 118283.0 46-47 115380.0 48-49 99933.0 50-51 88955.0 52-53 86129.0 54-55 91714.0 56-57 94796.0 58-59 94416.0 60-61 92690.0 62-63 91901.0 64-65 98264.0 66-67 103467.0 68-69 104584.0 70-71 103586.0 72-73 101118.0 74-75 103402.0 76-77 105394.0 78-79 110994.0 80-81 113524.0 82-83 111137.0 84-85 114115.0 86-87 119733.0 88-89 127386.0 90-91 137744.0 92-93 141931.0 94-95 160100.0 96-97 236863.0 98-99 1026904.0 100-101 7694285.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.14318435217686 #Duplication Level Percentage of deduplicated Percentage of total 1 87.97840982851739 72.26826737555272 2 7.951206716934449 13.062748783428265 3 2.187084979642392 5.389623740299259 4 0.8635332546036174 2.8373348530856086 5 0.40081137421018614 1.6461961301098331 6 0.20988884062026772 1.0344562637121189 7 0.12297392508621721 0.7071028859207549 8 0.08851893909959094 0.581698202649345 9 0.05065413482269251 0.3744802741446407 >10 0.14354305198454495 1.8153373424943633 >50 0.0026047637677971175 0.14502851063436412 >100 6.994123689376947E-4 0.09868650092117749 >500 7.077834197470312E-5 0.03903913704760114 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.17137998673785E-6 0.0 8.17137998673785E-6 0.0 3 0.0 8.17137998673785E-6 0.0 1.63427599734757E-5 0.0 4 0.0 4.085689993368925E-5 0.0 3.26855199469514E-5 8.17137998673785E-6 5 0.0 4.085689993368925E-5 0.0 4.085689993368925E-5 8.17137998673785E-6 6 8.988517985411635E-5 4.085689993368925E-5 0.0 4.085689993368925E-5 8.17137998673785E-6 7 9.80565598408542E-5 4.085689993368925E-5 0.0 4.085689993368925E-5 8.17137998673785E-6 8 9.80565598408542E-5 6.53710398939028E-5 0.0 8.17137998673785E-5 8.17137998673785E-6 9 1.143993198143299E-4 9.80565598408542E-5 0.0 1.7159897972149487E-4 8.17137998673785E-6 10-11 1.2257069980106775E-4 9.80565598408542E-5 0.0 2.2062725964192196E-4 8.17137998673785E-6 12-13 1.307420797878056E-4 9.80565598408542E-5 0.0 2.3697001961539766E-4 8.17137998673785E-6 14-15 1.5525621974801914E-4 1.2257069980106775E-4 0.0 2.451413996021355E-4 1.63427599734757E-5 16-17 2.0428449966844626E-4 1.307420797878056E-4 0.0 2.655698495689801E-4 2.451413996021355E-5 18-19 2.0428449966844626E-4 1.3482776978117453E-4 0.0 2.982553695159315E-4 2.451413996021355E-5 20-21 2.0428449966844626E-4 1.5525621974801914E-4 0.0 3.391122694496208E-4 2.8599829953582478E-5 22-23 2.124558796551841E-4 1.7159897972149487E-4 0.0 3.677120994032033E-4 3.26855199469514E-5 24-25 2.2062725964192196E-4 2.0019880967507732E-4 0.0 3.8814054937004786E-4 3.26855199469514E-5 26-27 2.2062725964192196E-4 2.124558796551841E-4 0.0 4.535115892639507E-4 3.26855199469514E-5 28-29 2.2062725964192196E-4 2.1654156964855305E-4 0.0 6.169391889987077E-4 3.26855199469514E-5 30-31 2.287986396286598E-4 2.5331277958887333E-4 0.0 0.0011562502681234058 3.26855199469514E-5 32-33 2.4105570960876658E-4 2.614841595756112E-4 0.0 0.0023084148462534427 3.26855199469514E-5 34-35 2.573984695822423E-4 3.023410595093005E-4 0.0 0.00399171912352144 4.90282799204271E-5 36-37 2.8191260954245584E-4 3.4319795944298974E-4 0.0 0.006614732099264289 4.90282799204271E-5 38-39 2.941696795225626E-4 3.513693394297276E-4 0.0 0.010422595173084127 4.90282799204271E-5 40-41 2.941696795225626E-4 3.595407194164654E-4 0.0 0.01485965450588278 4.90282799204271E-5 42-43 3.0234105950930045E-4 3.758834793899411E-4 0.0 0.018986201399185394 4.90282799204271E-5 44-45 3.1459812948940723E-4 4.330831392971061E-4 0.0 0.02383182973132094 5.3113969913796025E-5 46-47 3.391122694496208E-4 4.739400392307953E-4 0.0 0.02942922502223637 6.128534990053387E-5 48-49 3.4319795944298974E-4 4.739400392307953E-4 0.0 0.034716107873655755 8.17137998673785E-5 50-51 3.717977893965722E-4 5.352253891313292E-4 0.0 0.040158246944823166 8.17137998673785E-5 52-53 3.8405485937667897E-4 5.393110791246981E-4 0.0 0.04561264308597068 8.579948986074743E-5 54-55 3.8814054937004786E-4 5.597395290915428E-4 0.0 0.05134078045667391 9.397086984748527E-5 56-57 4.126546893302614E-4 5.883393590451252E-4 0.0 0.057166974387218 9.80565598408542E-5 58-59 4.330831392971061E-4 5.924250490384941E-4 0.0 0.062396657578730225 9.80565598408542E-5 60-61 4.6576865924405743E-4 6.00596429025232E-4 0.0 0.067842882339891 9.80565598408542E-5 62-63 5.474824591114359E-4 6.046821190186009E-4 0.0 0.07327685003107168 9.80565598408542E-5 64-65 5.556538390981738E-4 6.700531589125037E-4 0.0 0.07850244753259053 1.0214224983422313E-4 66-67 6.005964290252319E-4 6.700531589125037E-4 0.0 0.08419381369335344 1.0622793982759205E-4 68-69 6.251105689854455E-4 6.782245388992416E-4 0.0 0.08999140779394395 1.0622793982759205E-4 70-71 6.53710398939028E-4 6.863959188859795E-4 0.0 0.09518023408552248 1.0622793982759205E-4 72-73 7.190814388329308E-4 6.945672988727173E-4 0.0 0.09913926768909698 1.2257069980106775E-4 74-75 7.272528188196687E-4 7.190814388329308E-4 0.0 0.1023833055438319 1.2257069980106775E-4 76-77 7.558526487732512E-4 7.435955787931444E-4 0.0 0.10561508632858671 1.266563897944367E-4 78-79 7.5993833876662E-4 7.517669587798823E-4 0.0 0.10840152690406432 1.307420797878056E-4 80-81 7.64024028759989E-4 7.517669587798823E-4 0.0 0.109627233902075 1.3482776978117453E-4 82-83 7.762810987400957E-4 7.681097187533579E-4 0.0 0.11005623135137874 1.3891345977454345E-4 84-85 7.885381687202026E-4 7.681097187533579E-4 0.0 0.11032180120094771 1.3891345977454345E-4 86-87 7.926238587135715E-4 7.762810987400958E-4 0.0 0.1104280291407753 1.3891345977454345E-4 88-89 7.926238587135715E-4 7.967095487069404E-4 0.0 0.110468886040709 1.3891345977454345E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16710 0.0 52.488037 1 GTATCAA 31010 0.0 36.829357 1 ATCAACG 38785 0.0 28.586336 3 TCAACGC 38880 0.0 28.516487 4 CAACGCA 39635 0.0 27.973282 5 TATCAAC 40760 0.0 27.621101 2 AACGCAG 40580 0.0 27.374523 6 ACGCAGA 46540 0.0 23.859707 7 CGCAGAG 47300 0.0 23.476336 8 GTACATG 36415 0.0 21.456322 1 TACATGG 36475 0.0 20.987452 2 GCAGAGT 53900 0.0 20.451351 9 ACATGGG 36670 0.0 20.432585 3 GAGTACT 33545 0.0 19.75773 12-13 AGAGTAC 49720 0.0 19.22356 10-11 CATGGGG 27740 0.0 18.535807 4 CAGAGTA 53475 0.0 18.3573 10-11 GTACTTT 37795 0.0 17.429125 14-15 GTGGTAT 8045 0.0 17.42638 1 AGTACTT 36840 0.0 17.369818 12-13 >>END_MODULE