##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139023_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10657034 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.49552839936515 34.0 31.0 34.0 31.0 34.0 2 32.639938185427575 34.0 31.0 34.0 31.0 34.0 3 32.63292347570628 34.0 31.0 34.0 31.0 34.0 4 36.19646723469213 37.0 35.0 37.0 35.0 37.0 5 36.13196082512264 37.0 35.0 37.0 35.0 37.0 6 36.15773178541046 37.0 36.0 37.0 35.0 37.0 7 36.108158705320825 37.0 36.0 37.0 35.0 37.0 8 36.095013959794066 37.0 36.0 37.0 35.0 37.0 9 37.80048801570869 39.0 38.0 39.0 35.0 39.0 10-11 37.74324159986728 39.0 38.0 39.0 35.0 39.0 12-13 37.7119178281687 39.0 37.5 39.0 35.0 39.0 14-15 39.05207799843747 40.0 38.0 41.0 36.0 41.0 16-17 39.02981458067977 40.0 38.0 41.0 36.0 41.0 18-19 38.9549337085722 40.0 38.5 41.0 35.0 41.0 20-21 39.01508007550807 40.0 39.0 41.0 35.0 41.0 22-23 38.94568197831161 40.0 38.0 41.0 35.0 41.0 24-25 38.86921508397296 40.0 38.0 41.0 35.0 41.0 26-27 38.78847347580068 40.0 38.0 41.0 35.0 41.0 28-29 38.57248794935377 40.0 38.0 41.0 34.5 41.0 30-31 38.49913538090789 40.0 38.0 41.0 34.0 41.0 32-33 38.43006508182889 40.0 38.0 41.0 34.0 41.0 34-35 38.24084827564711 40.0 38.0 41.0 34.0 41.0 36-37 38.361041433534176 40.0 38.0 41.0 34.0 41.0 38-39 38.476821453087965 40.0 38.0 41.0 34.0 41.0 40-41 38.477239772088346 40.0 38.0 41.0 34.0 41.0 42-43 38.352285862000905 40.0 38.0 41.0 34.0 41.0 44-45 38.290335467921395 40.0 38.0 41.0 33.0 41.0 46-47 38.30311605764499 40.0 38.0 41.0 33.0 41.0 48-49 38.18125438869324 40.0 38.0 41.0 33.0 41.0 50-51 38.11911801095138 40.0 37.5 41.0 33.0 41.0 52-53 38.04672500205696 40.0 37.0 41.0 33.0 41.0 54-55 37.93829774325911 40.0 37.0 41.0 33.0 41.0 56-57 37.78500027048941 40.0 36.5 41.0 33.0 41.0 58-59 37.62846590596224 39.5 36.0 41.0 33.0 41.0 60-61 37.44829345129081 39.0 36.0 41.0 32.5 41.0 62-63 37.231692553285825 39.0 35.0 40.5 32.0 41.0 64-65 36.99617590310575 38.5 35.0 40.0 32.0 41.0 66-67 36.7226370873492 38.0 35.0 40.0 31.5 41.0 68-69 36.4165218695156 37.0 35.0 40.0 31.0 41.0 70-71 36.12639017861952 37.0 35.0 39.5 31.0 41.0 72-73 35.80308534770872 36.5 34.5 39.0 31.0 41.0 74-75 35.481507486465986 36.0 34.0 39.0 31.0 40.0 76-77 34.46766323388685 35.0 33.5 37.0 29.5 39.0 78-79 34.78068101983152 35.0 34.0 37.0 30.0 39.0 80-81 34.63002233052451 35.0 34.0 37.0 30.0 39.0 82-83 34.36843931546527 35.0 34.0 36.5 30.0 38.5 84-85 34.10079880296577 35.0 34.0 36.0 30.0 37.0 86-87 33.85193946503772 35.0 34.0 36.0 30.0 37.0 88-89 33.60851006349381 35.0 33.0 35.0 29.5 36.5 90-91 33.48447290844281 35.0 33.0 35.0 29.0 36.0 92-93 33.40689561239742 35.0 33.0 35.0 29.0 36.0 94-95 33.32064146544259 35.0 33.0 35.0 29.0 36.0 96-97 33.3083511343524 35.0 33.0 35.0 30.0 35.0 98-99 33.341413175343106 34.0 33.0 35.0 30.0 35.0 100-101 32.133082197401876 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 64.0 21 341.0 22 1632.0 23 5245.0 24 13267.0 25 27072.0 26 47793.0 27 74349.0 28 105613.0 29 141346.0 30 180683.0 31 226283.0 32 284269.0 33 367586.0 34 510522.0 35 730962.0 36 1209249.0 37 2305029.0 38 3002420.0 39 1364898.0 40 58406.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.628543363941596 21.62542598625471 15.54799393527317 24.198036714530517 2 13.624747748763868 22.097883895275178 41.532343802224894 22.74502455373606 3 16.704385337368002 27.27314185423096 31.611627247074402 24.410845561326635 4 11.863037108504463 19.302707380244644 39.36041020105249 29.473845310198403 5 12.62647214396634 38.34860140165268 36.04403907256748 12.980887381813497 6 28.760639938984795 39.159132349993655 19.06325372881114 13.016973982210406 7 25.396274884711502 33.3939991427025 23.837684380895325 17.37204159169067 8 23.969369535736792 37.18779593302863 21.423740251921465 17.41909427931311 9 25.174711653987035 16.970855179718697 21.660754427048243 36.193678739246025 10-11 23.584924161768956 27.246879195002432 29.440868399870656 19.72732824335795 12-13 24.585068475225672 24.91192785006366 29.477078955256715 21.025924719453954 14-15 21.685749172199994 26.275229573015892 27.226260642933468 24.81276061185065 16-17 21.0932246303732 29.42218874166546 27.80975461839086 21.674832009570487 18-19 21.20898869488134 28.451099560468577 29.67914797282658 20.660763771823504 20-21 21.901715888140576 27.54585215287626 29.667405388367523 20.885026570615643 22-23 21.67732058382593 27.607157281323243 29.456005720254215 21.259516414596614 24-25 21.48251815078723 27.753056359576618 29.515195481786506 21.249230007849647 26-27 21.439127968724137 27.872569912369645 29.492391923721406 21.195910195184812 28-29 21.37014453185272 27.811895403743385 29.459890673567195 21.358069390836697 30-31 21.644134931548994 27.796877014989697 29.378215584653795 21.18077246880752 32-33 21.464146247911177 27.844027695062845 29.356915938015238 21.334910119010743 34-35 21.528230673084288 27.974486730310836 29.390954964537762 21.106327632067114 36-37 21.60949202505299 27.917876583562638 29.210725635833377 21.261905755550995 38-39 21.441143120770576 27.947235938131943 29.295252922478554 21.316368018618924 40-41 21.588937589829023 27.871773613425177 29.16799697769987 21.37129181904593 42-43 21.582459521196085 28.016277972716168 28.91110785044657 21.49015465564117 44-45 21.639154637778727 28.105607035354986 28.72933913939326 21.525899187473026 46-47 21.71141747151944 28.098902698177415 28.377255847005518 21.812423983297627 48-49 21.770587805631923 28.221869105718078 28.246588145568474 21.760954943081526 50-51 21.764384650999816 28.295771919162938 28.144533730506694 21.795309699330552 52-53 21.813408193814755 28.309993788312678 28.096662652792464 21.779935365080103 54-55 21.802850015848595 28.23992157073346 28.07898484623756 21.878243567180384 56-57 21.880514787768448 28.356398709326115 27.95117363906335 21.811912863842085 58-59 21.724093554879236 28.450836337631515 28.10129789101974 21.723772216469516 60-61 21.89249918853627 28.48305935134881 27.943239216788335 21.681202243326585 62-63 21.842194982391277 28.575304301111178 27.893274597678648 21.6892261188189 64-65 21.798938684329215 28.47444840634993 27.90870505160158 21.817907857719277 66-67 21.86725431836658 28.43213899396 27.839829079353134 21.86077760832029 68-69 21.82643159444351 28.348761631222956 27.878348951675015 21.94645782265852 70-71 21.773808910767453 28.238757864105647 27.94174544413966 22.045687780987244 72-73 21.91481928365347 28.266340347305736 27.878293421952566 21.94054694708823 74-75 21.78908028753036 28.390989626899387 27.848392370694093 21.971537714876163 76-77 21.82057630606701 28.35808573496625 27.81323963707646 22.008098321890284 78-79 21.776070071609478 28.29317292675783 27.839462130749176 22.091294870883516 80-81 21.833156645570075 28.33213807844429 27.80288232837229 22.031822947613342 82-83 21.855225304609753 28.31922618198619 27.917307271053023 21.908241242351032 84-85 21.91312359339254 28.310609248363484 27.838502955250892 21.937764202993083 86-87 21.825114499958016 28.34139318582239 27.86501749883905 21.96847481538055 88-89 21.82755270177119 28.261167115649027 27.84347120583717 22.067808976742615 90-91 21.87331920202403 28.35720160878893 27.83915907889668 21.930320110290356 92-93 21.87602276591883 28.286181267722377 27.904468793052484 21.933327173306314 94-95 21.70668301283852 28.390699600583563 27.93244704591553 21.97017034066239 96-97 21.694407109255014 28.430089283979065 27.952735130287476 21.922768476478442 98-99 21.920148452112393 28.989915077793892 27.988294647919847 21.10164182217386 100-101 22.366212381825402 31.72624445661713 25.21718437570502 20.690358785852446 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4479.0 1 3700.5 2 4047.5 3 5433.0 4 6886.5 5 9761.5 6 12198.5 7 14684.0 8 16729.0 9 17107.0 10 15883.5 11 14476.0 12 15994.0 13 21759.0 14 35353.5 15 53681.5 16 68067.0 17 75070.0 18 75303.5 19 71458.0 20 65819.5 21 60761.0 22 58749.0 23 63005.0 24 73342.5 25 88467.0 26 107640.5 27 128892.5 28 154244.5 29 182545.5 30 208962.0 31 233961.0 32 258811.5 33 282343.5 34 304395.5 35 324695.5 36 344877.0 37 363314.5 38 377899.5 39 389744.5 40 399280.5 41 407844.5 42 412336.0 43 414395.5 44 418500.0 45 424060.5 46 429455.5 47 431390.5 48 426389.5 49 416330.5 50 405425.5 51 389845.5 52 368483.5 53 345615.5 54 322969.5 55 298224.0 56 272069.0 57 244799.5 58 215511.5 59 185033.0 60 153412.0 61 124569.5 62 98976.0 63 76041.0 64 57119.5 65 42910.0 66 32827.0 67 25191.5 68 19051.5 69 13928.5 70 10228.0 71 7517.5 72 5266.5 73 3725.5 74 2532.5 75 1703.0 76 1116.0 77 667.0 78 434.5 79 297.0 80 198.5 81 135.5 82 98.5 83 67.5 84 47.5 85 34.0 86 26.5 87 20.5 88 14.0 89 10.5 90 8.5 91 5.5 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.193092749821386E-4 4 1.501355818138518E-4 5 4.0348937612472667E-4 6 1.6890252954058322E-4 7 0.0027212074203760636 8 5.817753795286756E-4 9 4.316397977148238E-4 10-11 7.50677909069259E-5 12-13 4.2225632385145805E-5 14-15 2.0174468806236334E-4 16-17 9.618060709949879E-4 18-19 2.8150421590097207E-5 20-21 0.0 22-23 0.0029092190853593504 24-25 0.0071619863914749275 26-27 0.035744453963674004 28-29 0.27973265261499597 30-31 0.24379510392865197 32-33 0.251280334817966 34-35 0.13196822306160888 36-37 0.023263543336217107 38-39 0.01495435342325579 40-41 0.008401511349750115 42-43 0.005621185775110483 44-45 0.006314072095382891 46-47 0.0013651340236344618 48-49 0.0019006629930466582 50-51 0.0024034953948225395 52-53 0.0013196817231058977 54-55 1.6814104282093795E-4 56-57 0.0014180544118781169 58-59 0.0027779452088659783 60-61 0.011816924879547105 62-63 0.007643111325476911 64-65 0.002171508047406575 66-67 0.0015801847837987415 68-69 0.002209888954437465 70-71 0.003833226672018926 72-73 0.003272611168275673 74-75 0.0034050254261467593 76-77 0.001462523842950237 78-79 6.275624157889684E-5 80-81 3.403191432171395E-4 82-83 1.1667238458578125E-5 84-85 0.0 86-87 1.1936247309495256E-5 88-89 0.0 90-91 3.6746985369187776E-4 92-93 0.007251072904039165 94-95 0.0010921177318065655 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 202.0 20-21 736.0 22-23 1587.0 24-25 4058.0 26-27 5847.0 28-29 9792.0 30-31 20940.0 32-33 27717.0 34-35 39884.0 36-37 54653.0 38-39 65808.0 40-41 70458.0 42-43 84006.0 44-45 100188.0 46-47 99598.0 48-49 87209.0 50-51 77209.0 52-53 74534.0 54-55 79901.0 56-57 84248.0 58-59 84616.0 60-61 84356.0 62-63 83594.0 64-65 88802.0 66-67 95259.0 68-69 91642.0 70-71 89218.0 72-73 86498.0 74-75 88109.0 76-77 88805.0 78-79 94767.0 80-81 97994.0 82-83 95116.0 84-85 96729.0 86-87 102153.0 88-89 108486.0 90-91 115281.0 92-93 123523.0 94-95 140035.0 96-97 216456.0 98-99 908524.0 100-101 6688496.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.33958141514756 #Duplication Level Percentage of deduplicated Percentage of total 1 88.82812112404709 74.02898432372112 2 7.487713077173545 12.480457472167398 3 1.9723823470378963 4.931325575782938 4 0.7769288264299219 2.589956927361261 5 0.3551258670322271 1.479802055407858 6 0.19557771528103748 0.9779618955391542 7 0.11932783403626344 0.6961312217830876 8 0.0690115312534524 0.4601113701984878 9 0.04531736217523037 0.33990569950701066 >10 0.14784418113725767 1.8353955334730918 >50 0.00238030979645501 0.12961645905245803 >100 2.5052094252821586E-4 0.042162884191997395 >500 1.930365714362543E-5 0.008188581814208144 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.383473863365735E-6 0.0 0.0 0.0 3 0.0 9.383473863365735E-6 0.0 0.0 0.0 4 0.0 3.753389545346294E-5 0.0 0.0 0.0 5 0.0 4.691736931682868E-5 0.0 0.0 0.0 6 0.0 4.691736931682868E-5 0.0 0.0 0.0 7 0.0 4.691736931682868E-5 0.0 0.0 0.0 8 0.0 4.691736931682868E-5 0.0 0.0 0.0 9 0.0 5.6300843180194414E-5 0.0 9.383473863365735E-6 0.0 10-11 4.6917369316828675E-6 5.6300843180194414E-5 0.0 9.383473863365735E-6 0.0 12-13 9.383473863365735E-6 5.6300843180194414E-5 0.0 9.383473863365735E-6 0.0 14-15 9.383473863365735E-6 7.975952783860875E-5 0.0 9.383473863365735E-6 0.0 16-17 2.345868465841434E-5 8.445126477029162E-5 0.0 9.383473863365735E-6 0.0 18-19 3.753389545346294E-5 8.445126477029162E-5 0.0 9.383473863365735E-6 0.0 20-21 3.753389545346294E-5 8.445126477029162E-5 0.0 9.383473863365735E-6 0.0 22-23 1.032182124970231E-4 8.445126477029162E-5 0.0 9.383473863365735E-6 0.0 24-25 1.032182124970231E-4 9.852647556534023E-5 0.0 3.753389545346294E-5 0.0 26-27 1.1260168636038883E-4 1.1260168636038883E-4 0.0 9.852647556534023E-5 0.0 28-29 1.2198516022375457E-4 1.1260168636038883E-4 0.0 3.002711636277036E-4 0.0 30-31 1.313686340871203E-4 1.2198516022375457E-4 0.0 7.647531198643075E-4 0.0 32-33 1.4075210795048604E-4 1.2198516022375457E-4 0.0 0.001961146037443439 0.0 34-35 1.4075210795048604E-4 1.3606037101880316E-4 0.0 0.0037017804390977824 0.0 36-37 1.876694772673147E-4 1.5013558181385176E-4 0.0 0.006061724115734265 0.0 38-39 1.876694772673147E-4 1.5482731874553465E-4 0.0 0.009786963239490461 0.0 40-41 1.9236121419899757E-4 1.78286003403949E-4 0.0 0.013648262734265462 0.0 42-43 1.9705295113068045E-4 1.876694772673147E-4 0.0 0.01752363743983551 0.0 44-45 1.9705295113068045E-4 2.064364249940462E-4 0.0 0.022360818216400548 0.0 46-47 1.9705295113068045E-4 2.158198988574119E-4 0.0 0.02794398516510316 0.0 48-49 1.9705295113068045E-4 2.158198988574119E-4 9.383473863365735E-6 0.033086128842227586 0.0 50-51 2.0174468806236334E-4 2.908876897643378E-4 9.383473863365735E-6 0.03830803204719062 0.0 52-53 2.064364249940462E-4 3.096546374910693E-4 9.383473863365735E-6 0.04322028061466258 4.6917369316828675E-6 54-55 2.1112816192572905E-4 3.096546374910693E-4 9.383473863365735E-6 0.04842810860883056 9.383473863365735E-6 56-57 2.2989510965246054E-4 3.096546374910693E-4 9.383473863365735E-6 0.053804839132539126 9.383473863365735E-6 58-59 2.721207420376063E-4 3.096546374910693E-4 9.383473863365735E-6 0.059036125811365525 9.383473863365735E-6 60-61 2.908876897643378E-4 3.096546374910693E-4 9.383473863365735E-6 0.06417826948848995 9.383473863365735E-6 62-63 2.908876897643378E-4 3.096546374910693E-4 9.383473863365735E-6 0.06914212716221042 9.383473863365735E-6 64-65 2.908876897643378E-4 3.941059022613609E-4 9.383473863365735E-6 0.07424673694388138 9.383473863365735E-6 66-67 2.908876897643378E-4 3.941059022613609E-4 9.383473863365735E-6 0.07961877573065826 9.383473863365735E-6 68-69 2.908876897643378E-4 3.9879763919304376E-4 9.383473863365735E-6 0.08523009310095098 9.383473863365735E-6 70-71 2.908876897643378E-4 4.034893761247266E-4 9.383473863365735E-6 0.09007196561444769 9.383473863365735E-6 72-73 2.908876897643378E-4 4.034893761247266E-4 9.383473863365735E-6 0.09426637843137217 9.383473863365735E-6 74-75 2.908876897643378E-4 4.2694806078314096E-4 9.383473863365735E-6 0.09728316527844427 9.383473863365735E-6 76-77 2.908876897643378E-4 4.316397977148238E-4 9.383473863365735E-6 0.10013104959597577 9.383473863365735E-6 78-79 2.908876897643378E-4 4.316397977148238E-4 9.383473863365735E-6 0.1029132495964637 9.383473863365735E-6 80-81 2.908876897643378E-4 4.316397977148238E-4 9.383473863365735E-6 0.10415655988335967 9.383473863365735E-6 82-83 2.908876897643378E-4 4.316397977148238E-4 9.383473863365735E-6 0.10459289141800618 9.383473863365735E-6 84-85 2.908876897643378E-4 4.316397977148238E-4 9.383473863365735E-6 0.10484624521231704 9.383473863365735E-6 86-87 2.908876897643378E-4 4.316397977148238E-4 9.383473863365735E-6 0.1048884708447022 9.383473863365735E-6 88-89 2.908876897643378E-4 4.410232715781896E-4 9.383473863365735E-6 0.1049166212662923 9.383473863365735E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14485 0.0 50.716957 1 GTATCAA 26630 0.0 36.62185 1 TCAACGC 33540 0.0 28.605335 4 ATCAACG 33560 0.0 28.486683 3 CAACGCA 34160 0.0 28.048489 5 TATCAAC 34710 0.0 27.75205 2 AACGCAG 35170 0.0 27.340212 6 ACGCAGA 39855 0.0 24.094172 7 CGCAGAG 40715 0.0 23.563477 8 GCAGAGT 46745 0.0 20.368523 9 GTACATG 31175 0.0 20.288553 1 CTTATAC 7270 0.0 20.163017 1 TACATGG 31365 0.0 19.634258 2 GTGGTAT 7325 0.0 19.19482 1 AGAGTAC 42900 0.0 19.11107 10-11 GAGTACT 28835 0.0 18.985096 12-13 ACATGGG 31840 0.0 18.831392 3 TGGTATC 7105 0.0 18.586182 2 CAGAGTA 45830 0.0 18.304209 10-11 AGTACTT 31875 0.0 17.502909 12-13 >>END_MODULE