##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139022_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9879421 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.49619000951574 34.0 31.0 34.0 31.0 34.0 2 32.63562257342814 34.0 31.0 34.0 31.0 34.0 3 32.62922877767837 34.0 31.0 34.0 31.0 34.0 4 36.1910858946086 37.0 35.0 37.0 35.0 37.0 5 36.12822795991789 37.0 35.0 37.0 35.0 37.0 6 36.152334635805076 37.0 36.0 37.0 35.0 37.0 7 36.10016194268875 37.0 36.0 37.0 35.0 37.0 8 36.08849091459914 37.0 36.0 37.0 35.0 37.0 9 37.79184680964603 39.0 38.0 39.0 35.0 39.0 10-11 37.73467630339875 39.0 37.5 39.0 35.0 39.0 12-13 37.70214499412465 39.0 37.0 39.0 35.0 39.0 14-15 39.039988224006244 40.0 38.0 41.0 36.0 41.0 16-17 39.01576301890566 40.0 38.0 41.0 36.0 41.0 18-19 38.942284421323876 40.0 38.5 41.0 35.0 41.0 20-21 39.005134056743344 40.0 38.5 41.0 35.0 41.0 22-23 38.93624566599473 40.0 38.0 41.0 35.0 41.0 24-25 38.85719603338515 40.0 38.0 41.0 35.0 41.0 26-27 38.77507497720318 40.0 38.0 41.0 35.0 41.0 28-29 38.55673311529798 40.0 38.0 41.0 34.5 41.0 30-31 38.48082086470479 40.0 38.0 41.0 34.0 41.0 32-33 38.40851471430747 40.0 38.0 41.0 34.0 41.0 34-35 38.218527141098626 40.0 38.0 41.0 34.0 41.0 36-37 38.342431736526834 40.0 38.0 41.0 34.0 41.0 38-39 38.45480698471936 40.0 38.0 41.0 34.0 41.0 40-41 38.46129909211958 40.0 38.0 41.0 34.0 41.0 42-43 38.34019834066844 40.0 38.0 41.0 34.0 41.0 44-45 38.27900047152674 40.0 38.0 41.0 33.0 41.0 46-47 38.29212914057659 40.0 38.0 41.0 33.0 41.0 48-49 38.168642896360154 40.0 38.0 41.0 33.0 41.0 50-51 38.10598497783658 40.0 37.5 41.0 33.0 41.0 52-53 38.03568233119587 40.0 37.0 41.0 33.0 41.0 54-55 37.92511040622128 40.0 37.0 41.0 33.0 41.0 56-57 37.76478960785796 40.0 36.5 41.0 33.0 41.0 58-59 37.60752422047075 39.0 36.0 41.0 33.0 41.0 60-61 37.42247225520093 39.0 36.0 41.0 32.0 41.0 62-63 37.20825864881904 39.0 35.0 40.5 32.0 41.0 64-65 36.976104521017774 38.5 35.0 40.0 32.0 41.0 66-67 36.70538843676548 38.0 35.0 40.0 31.0 41.0 68-69 36.40000554073453 37.0 35.0 40.0 31.0 41.0 70-71 36.108430756847355 37.0 35.0 39.5 31.0 41.0 72-73 35.78696281834724 36.0 34.5 39.0 31.0 41.0 74-75 35.4651375687873 36.0 34.0 39.0 31.0 40.0 76-77 34.44805667958437 35.0 33.5 37.0 29.5 39.0 78-79 34.76243987669811 35.0 34.0 37.0 30.0 39.0 80-81 34.61571290147208 35.0 34.0 37.0 30.0 39.0 82-83 34.35455999848767 35.0 34.0 36.0 30.0 38.5 84-85 34.08887699086428 35.0 34.0 36.0 30.0 37.0 86-87 33.84061227269072 35.0 34.0 35.5 30.0 37.0 88-89 33.598879031471824 35.0 33.0 35.0 29.5 36.5 90-91 33.473877682860945 35.0 33.0 35.0 29.0 36.0 92-93 33.39810686368503 35.0 33.0 35.0 29.0 36.0 94-95 33.31495696849157 35.0 33.0 35.0 29.0 36.0 96-97 33.302986857505275 35.0 33.0 35.0 29.5 35.0 98-99 33.33936097159011 34.0 33.0 35.0 30.0 35.0 100-101 32.13004535151811 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 3.0 19 11.0 20 62.0 21 322.0 22 1489.0 23 5003.0 24 12275.0 25 25002.0 26 44231.0 27 69184.0 28 98735.0 29 132215.0 30 168315.0 31 210646.0 32 265053.0 33 344240.0 34 473321.0 35 678673.0 36 1122571.0 37 2136701.0 38 2757544.0 39 1277752.0 40 56072.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.50462491678409 21.635741608744073 15.495675303238924 24.36395817123291 2 13.643167954883188 21.99394073802503 41.458704918031124 22.904186389060655 3 16.644772549169655 27.317927081555638 31.652709293288662 24.38459107598605 4 11.877510399920967 19.29655256461879 39.24696049416756 29.578976541292683 5 12.597368274282184 38.3679207172358 36.066185576756745 12.968525431725272 6 28.69968814929884 39.12587061146483 19.020554573771484 13.153886665464839 7 25.328611466742462 33.4135427117977 23.733351796471435 17.5244940249884 8 24.081031895862985 37.01741477618662 21.45954868170224 17.442004646248154 9 25.31901004829144 16.818141927979163 21.54440491321783 36.318443110511566 10-11 23.551486487683352 27.230187017699688 29.381676288949365 19.836650205667596 12-13 24.614134697597095 24.796372134839103 29.421952849656442 21.167540317907356 14-15 21.778648072839992 26.108694974435714 27.179138669037663 24.933518283686634 16-17 21.134194573532852 29.325994028535774 27.76199958721851 21.777811810712862 18-19 21.227589395692195 28.364370414899902 29.683683827965996 20.724356361441902 20-21 22.022393956368873 27.376761472256465 29.651099584638025 20.949744986736636 22-23 21.721174973253543 27.473196851490556 29.43408061434647 21.371547560909438 24-25 21.50978567697314 27.63709383138075 29.571576223177342 21.281544268468767 26-27 21.53713550121468 27.80427860171177 29.440612150116586 21.217973746956968 28-29 21.401074594653497 27.719532787761764 29.481245519811633 21.39814709777311 30-31 21.680048913659963 27.721257247904664 29.38708884879443 21.211604989640946 32-33 21.537024262235978 27.691866768650584 29.36633278555379 21.40477618355964 34-35 21.508132444676626 27.825627803383302 29.47732819810069 21.188911553839386 36-37 21.68501113658876 27.793986247192677 29.23282193798108 21.288180678237488 38-39 21.497394434884825 27.775187623095665 29.319173935540434 21.40824400647908 40-41 21.619036820568766 27.735827761210853 29.195785805491386 21.449349612728998 42-43 21.67721193455929 27.86501012753012 28.934956662316974 21.522821275593618 44-45 21.723864594604304 28.07068036816481 28.684369159048373 21.521085878182518 46-47 21.83145281919567 27.913129114561702 28.342117132917572 21.913300933325058 48-49 21.843168666887337 28.092877736612447 28.19980569889004 21.864147897610174 50-51 21.739292372259722 28.145549809863006 28.223987892300194 21.891169925577074 52-53 21.805939854825308 28.124910865458286 28.212266814476557 21.856882465239853 54-55 21.838167772776895 28.080398890341012 28.11210091510131 21.969332421780788 56-57 22.06420331611193 28.176012889305884 27.892434382541214 21.86734941204097 58-59 21.76804514214111 28.441189294108277 28.12525350855845 21.665512055192167 60-61 22.02054065659185 28.468852288139146 27.854102746968906 21.656504308300097 62-63 21.853408360791608 28.52937778039498 27.836217782659077 21.78099607615433 64-65 21.84582728570817 28.411440217012036 27.889026909764375 21.853705587515417 66-67 22.00516672948006 28.352001007346107 27.739927486237164 21.902904776936673 68-69 21.92713013820829 28.206282818729832 27.90988685758454 21.95670018547734 70-71 21.906185181783737 28.067519758221245 27.985204010952565 22.04109104904246 72-73 21.991939679839742 28.06225624468449 27.930460516151207 22.015343559324563 74-75 21.90143611670387 28.17805304252825 27.87736291690633 22.043147923861554 76-77 21.98387811926949 28.146069692804847 27.79241021257153 22.07764197535413 78-79 21.902413938198325 28.09429584602188 27.843283421794613 22.160006793985186 80-81 21.930705158623784 28.08857560757333 27.870732148556783 22.109987085246104 82-83 21.94471777871799 28.061766210783855 27.96393770871632 22.029578301781836 84-85 22.103049283744 28.04368535695335 27.855124351700994 21.998141007601653 86-87 21.941284567531742 28.067834676246665 27.85975839797083 22.13112235825076 88-89 22.02027007998244 27.919806900865606 27.88748916448956 22.17243385466239 90-91 22.0444866824002 27.981402871291987 27.930814549581306 22.0432958967265 92-93 22.108699783055886 27.949023126461377 27.860405739096798 22.081871351385946 94-95 21.91145035045946 27.95692959681238 27.97467053190612 22.156949520822042 96-97 21.86432943487049 27.99835108119234 28.07535088314454 22.06196860079263 98-99 22.091752347335728 28.565253784477058 28.069063452022714 21.273930416164507 100-101 22.622435253868833 31.291696184504698 25.23132177875952 20.854546782866947 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2611.0 1 2366.0 2 3240.0 3 4602.0 4 6060.0 5 8884.0 6 11209.0 7 13820.0 8 16193.5 9 16480.0 10 14966.0 11 13419.0 12 14830.0 13 20404.0 14 33385.0 15 50962.5 16 64835.0 17 71525.5 18 71836.5 19 67950.5 20 61733.5 21 55739.5 22 52918.0 23 56188.0 24 65557.5 25 80911.0 26 100855.5 27 121225.5 28 143210.5 29 167798.5 30 189839.5 31 211153.5 32 235117.5 33 258714.0 34 280228.0 35 298289.5 36 317241.0 37 334995.5 38 346418.5 39 353593.5 40 363758.0 41 374445.0 42 378581.5 43 383217.0 44 391038.5 45 398984.5 46 407213.5 47 411388.5 48 404921.5 49 395142.5 50 384875.5 51 368877.0 52 348349.0 53 328767.5 54 308821.0 55 282861.0 56 255871.5 57 228322.0 58 200765.5 59 174116.5 60 146142.0 61 118766.5 62 92218.5 63 69753.5 64 52384.5 65 39901.5 66 30910.0 67 23561.5 68 17874.0 69 12750.0 70 8974.0 71 6403.5 72 4427.0 73 3104.5 74 2161.0 75 1487.5 76 982.5 77 620.0 78 402.5 79 272.0 80 198.5 81 146.0 82 99.5 83 65.5 84 46.0 85 33.5 86 28.0 87 27.0 88 18.0 89 10.5 90 9.5 91 8.0 92 6.0 93 3.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.567127871157632E-4 4 1.9231896282180907E-4 5 4.8585843239193875E-4 6 1.417087094476488E-4 7 0.00280380803692848 8 5.26346635091267E-4 9 3.036615202449617E-4 10-11 8.603743073607249E-5 12-13 2.0244101349664116E-5 14-15 1.3158665877281676E-4 16-17 0.0010324491688328697 18-19 2.0244101349664116E-5 20-21 0.0 22-23 0.002819333134073463 24-25 0.007057679314544414 26-27 0.035070661507436714 28-29 0.27798277770820085 30-31 0.24202781310394683 32-33 0.249607810732129 34-35 0.1298664936337419 36-37 0.021340935971353673 38-39 0.012356009228429804 40-41 0.0059669514870773245 42-43 0.003091163960035845 44-45 0.004135482189584517 46-47 7.558265175878702E-4 48-49 0.0012362704108244828 50-51 0.001962539990818349 52-53 9.616875693466896E-4 54-55 4.956881192039601E-5 56-57 0.0011777207891773681 58-59 0.002152761648416686 60-61 0.00960772148471549 62-63 0.005180197185605151 64-65 9.631506075144548E-4 66-67 0.0018712502854968311 68-69 0.002504874485749268 70-71 0.004258248540090755 72-73 0.003844345518224093 74-75 0.003968526726690481 76-77 0.00161510976328939 78-79 5.587155749726462E-5 80-81 4.583909723351629E-4 82-83 0.0 84-85 0.0 86-87 1.30181907084226E-5 88-89 0.0 90-91 4.816637951922728E-4 92-93 0.008077090084621274 94-95 0.0011467918429110715 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 200.0 20-21 686.0 22-23 1533.0 24-25 4276.0 26-27 5615.0 28-29 9198.0 30-31 19592.0 32-33 26013.0 34-35 37445.0 36-37 51573.0 38-39 62376.0 40-41 66803.0 42-43 79850.0 44-45 96035.0 46-47 94896.0 48-49 81992.0 50-51 73358.0 52-53 70920.0 54-55 76217.0 56-57 81483.0 58-59 82003.0 60-61 82709.0 62-63 83709.0 64-65 88701.0 66-67 96195.0 68-69 88799.0 70-71 85677.0 72-73 83191.0 74-75 85264.0 76-77 86369.0 78-79 90791.0 80-81 93541.0 82-83 92442.0 84-85 94228.0 86-87 99073.0 88-89 105063.0 90-91 112493.0 92-93 119122.0 94-95 133030.0 96-97 198013.0 98-99 839266.0 100-101 6099681.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.14632233896822 #Duplication Level Percentage of deduplicated Percentage of total 1 88.5353004205669 72.72849326725276 2 7.501567796572081 12.324524125296675 3 2.0254210576180873 4.99142673213688 4 0.837563551940859 2.752110620684198 5 0.39101013781823735 1.6060022409510655 6 0.22973221234166186 1.132299381999747 7 0.12971451607279905 0.7458899314551597 8 0.09573674742364506 0.6291537370837705 9 0.05875373623498539 0.4343763019840044 >10 0.1920340293907731 2.420607731745284 >50 0.0026050180222445523 0.13395945861597874 >100 5.152121117992736E-4 0.07411423057792471 >500 4.556388599854532E-5 0.027042240216493582 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0366152024496172E-5 0.0 1.0122050674832058E-5 0.0 3 1.0122050674832058E-5 4.048820269932823E-5 0.0 1.0122050674832058E-5 0.0 4 1.0122050674832058E-5 1.6195281079731293E-4 0.0 1.0122050674832058E-5 0.0 5 4.048820269932823E-5 1.6195281079731293E-4 0.0 1.0122050674832058E-5 0.0 6 4.048820269932823E-5 1.6195281079731293E-4 0.0 1.0122050674832058E-5 0.0 7 4.048820269932823E-5 1.7207486147214498E-4 0.0 2.0244101349664116E-5 0.0 8 4.048820269932823E-5 2.0244101349664115E-4 0.0 3.0366152024496172E-5 0.0 9 4.048820269932823E-5 3.643938242939541E-4 0.0 5.061025337416029E-5 0.0 10-11 4.048820269932823E-5 3.643938242939541E-4 0.0 5.061025337416029E-5 0.0 12-13 4.048820269932823E-5 3.643938242939541E-4 0.0 5.061025337416029E-5 0.0 14-15 4.048820269932823E-5 4.3524817901777847E-4 0.0 5.5671278711576316E-5 1.0122050674832058E-5 16-17 4.048820269932823E-5 4.3524817901777847E-4 0.0 6.0732304048992344E-5 2.0244101349664116E-5 18-19 4.048820269932823E-5 4.7067535637969067E-4 0.0 6.0732304048992344E-5 2.0244101349664116E-5 20-21 4.554922803674426E-5 5.21285609753851E-4 0.0 8.097640539865646E-5 2.0244101349664116E-5 22-23 6.0732304048992344E-5 5.820179138028433E-4 0.0 9.109845607348852E-5 2.0244101349664116E-5 24-25 7.085435472382441E-5 6.376891925144196E-4 0.0 1.062815320857366E-4 2.0244101349664116E-5 26-27 7.085435472382441E-5 6.781773952137479E-4 0.0 1.3664768411023279E-4 2.0244101349664116E-5 28-29 8.097640539865646E-5 6.832384205511638E-4 0.0 3.49210748281706E-4 2.0244101349664116E-5 30-31 9.109845607348852E-5 7.996420033117325E-4 0.0 9.666558394464615E-4 2.0244101349664116E-5 32-33 9.109845607348852E-5 7.996420033117325E-4 0.0 0.002211668072450805 3.0366152024496172E-5 34-35 9.109845607348852E-5 8.958014847226371E-4 0.0 0.0038818064337980936 4.048820269932823E-5 36-37 9.109845607348852E-5 0.0010071440421457896 0.0 0.006498356533242182 4.048820269932823E-5 38-39 9.109845607348852E-5 0.0010628153208573662 0.0 0.01028400348562937 4.048820269932823E-5 40-41 9.109845607348852E-5 0.0011640358276056866 0.0 0.014469471439672426 4.554922803674426E-5 42-43 9.109845607348852E-5 0.0011944019796301828 0.0 0.01854359683629233 5.5671278711576316E-5 44-45 9.109845607348852E-5 0.0012956224863785034 0.0 0.023199740146715074 6.0732304048992344E-5 46-47 9.109845607348852E-5 0.001391781967789408 0.0 0.028559365979038652 7.085435472382441E-5 48-49 1.0122050674832058E-4 0.001396842993126824 0.0 0.03393417488737447 1.0122050674832058E-4 50-51 1.0122050674832058E-4 0.0015942229812860491 0.0 0.03913184790890073 1.0122050674832058E-4 52-53 1.0122050674832058E-4 0.001609406057298297 0.0 0.04420299529699159 1.3158665877281676E-4 54-55 1.214646080979847E-4 0.0016296501586479614 0.0 0.04965878061072607 1.5183076012248087E-4 56-57 1.4676973478506484E-4 0.0016802604120221215 0.0 0.05576743819298722 1.6195281079731293E-4 58-59 1.5183076012248087E-4 0.0016903824626969535 0.0 0.06118273530402237 1.6195281079731293E-4 60-61 1.6195281079731293E-4 0.0017055655387092018 0.0 0.06661321549106977 1.6195281079731293E-4 62-63 1.6195281079731293E-4 0.0017308706653962817 0.0 0.07176533928455929 1.6195281079731293E-4 64-65 1.6195281079731293E-4 0.001933311678892923 0.0 0.07739319945976592 1.7207486147214498E-4 66-67 1.6195281079731293E-4 0.0019687388562548355 0.0 0.0829147781028868 1.8219691214697704E-4 68-69 1.6195281079731293E-4 0.0020193491096289953 0.0 0.08837056341662128 1.8219691214697704E-4 70-71 1.6195281079731293E-4 0.0020345321856412436 0.0 0.09353280926078562 1.8219691214697704E-4 72-73 1.6195281079731293E-4 0.0020497152616534915 0.0 0.09797132848169948 1.923189628218091E-4 74-75 1.6701383613472895E-4 0.002125630641714732 0.0 0.10132172725506888 1.923189628218091E-4 76-77 1.77135886809561E-4 0.0022319121738004688 0.0 0.10417614554537154 1.923189628218091E-4 78-79 1.8219691214697704E-4 0.002267339351162381 0.0 0.1070052587089871 1.923189628218091E-4 80-81 1.8219691214697704E-4 0.002277461401837213 0.0 0.10821990478996694 2.0244101349664115E-4 82-83 1.8219691214697704E-4 0.0022977055031868773 0.0 0.10866021399432213 2.2268511484630526E-4 84-85 1.8219691214697704E-4 0.002328071655211373 0.0 0.10901448576794126 2.2268511484630526E-4 86-87 1.8219691214697704E-4 0.002338193705886205 0.0 0.10911064524935216 2.277461401837213E-4 88-89 1.8219691214697704E-4 0.0024596583139841898 0.0 0.1091561944773889 2.3280716552113732E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13725 0.0 50.11933 1 GTATCAA 25425 0.0 38.567154 1 ATCAACG 32510 0.0 29.521357 3 TCAACGC 32620 0.0 29.434998 4 TATCAAC 33335 0.0 29.058592 2 CAACGCA 33155 0.0 28.921532 5 AACGCAG 33835 0.0 28.403004 6 CTTATAC 7315 0.0 28.380047 1 CGCAGAG 38965 0.0 24.641226 8 ACGCAGA 39030 0.0 24.611586 7 TATACAC 11655 0.0 22.04646 3 GCAGAGT 44815 0.0 21.25367 9 AGAGTAC 41050 0.0 19.705551 10-11 GAGTACT 27315 0.0 19.475567 12-13 TACATGG 29190 0.0 19.427103 2 GTACATG 29965 0.0 19.392958 1 ACATGGG 29400 0.0 18.695171 3 TTATACA 12215 0.0 18.562897 2 CAGAGTA 44120 0.0 18.440445 10-11 AGTACTT 29965 0.0 18.037153 12-13 >>END_MODULE