##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139021_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10621316 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.501867565186835 34.0 31.0 34.0 31.0 34.0 2 32.64590103523895 34.0 31.0 34.0 31.0 34.0 3 32.6396131138552 34.0 31.0 34.0 31.0 34.0 4 36.1981426783649 37.0 35.0 37.0 35.0 37.0 5 36.13677928422429 37.0 35.0 37.0 35.0 37.0 6 36.16164211666426 37.0 36.0 37.0 35.0 37.0 7 36.10927205254038 37.0 36.0 37.0 35.0 37.0 8 36.09462490335473 37.0 36.0 37.0 35.0 37.0 9 37.801635691848354 39.0 38.0 39.0 35.0 39.0 10-11 37.743057875314136 39.0 37.5 39.0 35.0 39.0 12-13 37.71553699183792 39.0 37.5 39.0 35.0 39.0 14-15 39.058724973440206 40.0 38.0 41.0 36.0 41.0 16-17 39.0339160891174 40.0 38.0 41.0 36.0 41.0 18-19 38.95376354493172 40.0 38.5 41.0 35.0 41.0 20-21 39.013507890028194 40.0 38.5 41.0 35.0 41.0 22-23 38.94314564070067 40.0 38.0 41.0 35.0 41.0 24-25 38.86499823117 40.0 38.0 41.0 35.0 41.0 26-27 38.78301198938382 40.0 38.0 41.0 35.0 41.0 28-29 38.56234126011053 40.0 38.0 41.0 34.5 41.0 30-31 38.49000208853114 40.0 38.0 41.0 34.0 41.0 32-33 38.42938454394012 40.0 38.0 41.0 34.0 41.0 34-35 38.24730453419481 40.0 38.0 41.0 34.0 41.0 36-37 38.368674167896685 40.0 38.0 41.0 34.0 41.0 38-39 38.48449408986709 40.0 38.0 41.0 34.0 41.0 40-41 38.490143695367316 40.0 38.0 41.0 34.0 41.0 42-43 38.36512754173416 40.0 38.0 41.0 34.0 41.0 44-45 38.3081325030071 40.0 38.0 41.0 33.0 41.0 46-47 38.32539001132735 40.0 38.0 41.0 33.5 41.0 48-49 38.204818687230315 40.0 38.0 41.0 33.0 41.0 50-51 38.13506109969957 40.0 37.5 41.0 33.0 41.0 52-53 38.071331839811094 40.0 37.0 41.0 33.0 41.0 54-55 37.96789518414875 40.0 37.0 41.0 33.0 41.0 56-57 37.81294586161246 40.0 37.0 41.0 33.0 41.0 58-59 37.66693249947477 39.5 36.0 41.0 33.0 41.0 60-61 37.49033704316906 39.0 36.0 41.0 32.5 41.0 62-63 37.2943207876629 39.0 35.5 41.0 32.0 41.0 64-65 37.07670244592852 39.0 35.0 40.0 32.0 41.0 66-67 36.81475657081715 38.0 35.0 40.0 31.5 41.0 68-69 36.51982330504592 37.5 35.0 40.0 31.0 41.0 70-71 36.23657204449145 37.0 35.0 40.0 31.0 41.0 72-73 35.91930924065285 36.5 35.0 39.0 31.0 41.0 74-75 35.598104976191976 36.0 34.0 39.0 31.0 40.0 76-77 34.57515345302804 35.0 33.5 37.0 29.5 39.0 78-79 34.883207607251485 35.0 34.0 37.0 30.0 39.0 80-81 34.72423168648285 35.0 34.0 37.0 30.0 39.0 82-83 34.4527619052947 35.0 34.0 36.5 30.0 39.0 84-85 34.173354514489475 35.0 34.0 36.0 30.0 37.5 86-87 33.91559601762451 35.0 34.0 36.0 30.0 37.0 88-89 33.661311809123816 35.0 33.5 35.0 30.0 37.0 90-91 33.530598813188185 35.0 33.0 35.0 30.0 36.0 92-93 33.44935708412089 35.0 33.0 35.0 30.0 36.0 94-95 33.356403345987616 35.0 33.0 35.0 30.0 36.0 96-97 33.33981031459609 35.0 33.0 35.0 30.0 35.5 98-99 33.373123316088495 34.5 33.0 35.0 30.0 35.0 100-101 32.17555143581309 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 9.0 20 50.0 21 350.0 22 1507.0 23 5166.0 24 12642.0 25 25896.0 26 46118.0 27 72519.0 28 102928.0 29 138842.0 30 178400.0 31 224260.0 32 282064.0 33 364872.0 34 501567.0 35 715222.0 36 1173488.0 37 2226040.0 38 3026206.0 39 1457960.0 40 65208.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.02222813067608 22.106281368523447 15.654792682940608 24.21669781785986 2 13.440349576267197 22.157254336468288 41.810779379880984 22.59161670738353 3 16.480088049817066 27.531017977151485 31.823832577302504 24.165061395728944 4 11.600323764297556 19.565445194268463 39.60097377846248 29.233257262971495 5 12.363383868697495 38.46991062749058 36.40204212771066 12.764663376101268 6 28.34749294153668 39.517348736858004 19.23317803521455 12.90198028639077 7 25.09508961180239 33.43436241706787 24.00900891570444 17.461539055425302 8 23.682613927161185 37.391994923389504 21.76238977296479 17.163001376484523 9 24.92580459714923 17.01820628365061 21.84343541332785 36.21255370587231 10-11 23.27091272074913 27.365541586723175 29.70211898171265 19.661426710815043 12-13 24.330200449812605 24.996022148676172 29.62541256673375 21.048364834777473 14-15 21.518700004034347 26.386322307511573 27.221926668166486 24.873051020287594 16-17 20.964440951018766 29.607473077128944 27.872300551523242 21.555785420329048 18-19 21.04956773009897 28.614393386581916 29.67931797148856 20.656720911830554 20-21 21.77266568810311 27.7434396540442 29.591357130819006 20.89253752703368 22-23 21.414057485063097 27.887372470971073 29.461436178351892 21.237133865613945 24-25 21.353653290750124 27.986618086794056 29.52850127300352 21.1312273494523 26-27 21.371953039904128 28.158126014714767 29.439901246171413 21.03001969920969 28-29 21.169157336787563 27.9720806319382 29.48358557227032 21.37517645900391 30-31 21.37195185706206 28.009782860577392 29.543097792932983 21.07516748942756 32-33 21.041990786731564 27.969069402986847 29.687085539246482 21.301854271035108 34-35 21.183049183008144 28.086129604240618 29.493735468708504 21.237085744042737 36-37 21.274933137076285 28.148271094725857 29.455174154303865 21.121621613893993 38-39 21.20702711898025 28.121230835333765 29.421254269672826 21.25048777601316 40-41 21.324692606443264 28.016335841493046 29.428563529015015 21.23040802304867 42-43 21.462975251737202 28.092823227853852 29.16778395683593 21.276417563573023 44-45 21.39961532814651 28.373344717941144 28.88778521223006 21.339254741682286 46-47 21.6019206586021 28.16449617040307 28.513127251360043 21.720455919634787 48-49 21.54590020602945 28.293667353231406 28.49500453869083 21.665427902048318 50-51 21.44888626096141 28.414814674251947 28.482371207048406 21.653927857738235 52-53 21.489660184266206 28.4852577470014 28.522061739944633 21.503020328787763 54-55 21.509119055408895 28.47473257990029 28.346027856236876 21.670120508453934 56-57 21.72593013405836 28.607676555277333 28.10940122504293 21.556992085621378 58-59 21.423129778669452 28.84511662781505 28.40608190799674 21.325671685518763 60-61 21.705474402069633 28.9410746118566 28.012984980449506 21.34046600562426 62-63 21.52556570476006 29.073049720189964 27.959590016166043 21.441794558883938 64-65 21.484786427570885 28.92030215480108 28.060587349458505 21.534324068169532 66-67 21.59185032630849 28.79888655694534 27.997152803818544 21.612110312927626 68-69 21.56876613072915 28.65575519259005 28.12095783553875 21.65452084114205 70-71 21.599232570539616 28.452186273951085 28.16845417923513 21.78012697627417 72-73 21.653718042238296 28.508872151375865 28.159224362523627 21.678185443862212 74-75 21.548876811146755 28.616370580756957 28.122953187977394 21.711799420118894 76-77 21.61647740407806 28.57101205779849 28.049988832176947 21.762521705946504 78-79 21.578101514659576 28.511602584766322 28.08964654648955 21.82064935408456 80-81 21.60895588008533 28.578686460099934 28.081902085360532 21.7304555744542 82-83 21.617148263147566 28.518177826849016 28.217260113514197 21.647413796489225 84-85 21.747862905677668 28.525313106367967 28.07687699764662 21.649946990307743 86-87 21.59037521852761 28.55833628359567 28.141572375063756 21.70971612281297 88-89 21.675231733334353 28.47492596125677 28.06345215045991 21.78639015494896 90-91 21.64598313047688 28.577932112916756 28.159076499612446 21.61700825699392 92-93 21.690005281433297 28.5133731075923 28.15329271187621 21.64332889909819 94-95 21.511885666761664 28.59683925031827 28.158232647104768 21.733042435815296 96-97 21.45760740262299 28.64153581035731 28.21017228462841 21.690684502391292 98-99 21.69168976944917 29.219153364919244 28.25716337032246 20.831993495309128 100-101 22.103859568216162 31.924793260537037 25.551582675131275 20.419764496115526 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3441.0 1 2919.5 2 3500.0 3 4822.5 4 6308.5 5 9211.5 6 11463.5 7 13486.0 8 15163.5 9 15153.5 10 13827.0 11 12666.0 12 14127.5 13 19529.0 14 32189.5 15 49240.0 16 62802.5 17 70002.5 18 71170.5 19 68447.0 20 63857.0 21 59179.5 22 57172.0 23 61443.5 24 72304.0 25 89161.5 26 110513.5 27 133575.0 28 160147.5 29 189825.0 30 217584.0 31 244758.5 32 273165.5 33 300499.0 34 325517.0 35 347997.5 36 370008.5 37 389860.5 38 402651.5 39 408839.0 40 415214.0 41 423233.0 42 427595.5 43 429178.5 44 431268.0 45 431704.0 46 430808.5 47 430941.5 48 434906.5 49 425156.5 50 403513.0 51 384831.5 52 362352.0 53 338353.5 54 311762.0 55 281615.0 56 253893.0 57 226997.5 58 198196.0 59 168701.0 60 138857.0 61 111468.5 62 87247.5 63 66625.0 64 49420.5 65 36750.0 66 27994.0 67 21496.0 68 16455.0 69 11883.0 70 8448.0 71 6181.0 72 4361.0 73 2990.5 74 2092.0 75 1409.5 76 895.5 77 576.0 78 384.0 79 269.5 80 199.0 81 131.5 82 91.5 83 63.5 84 43.0 85 30.0 86 21.5 87 17.0 88 13.0 89 10.5 90 7.5 91 3.5 92 3.0 93 2.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.272416337109262E-4 4 8.473526256068456E-5 5 3.860161961097853E-4 6 2.259607001618255E-4 7 0.00265503822690145 8 5.272416337109262E-4 9 3.577711085895571E-4 10-11 1.0827283549420806E-4 12-13 3.766011669363759E-5 14-15 2.0242312722830203E-4 16-17 8.991352860605974E-4 18-19 4.707514586704699E-6 20-21 0.0 22-23 0.0025847186256001175 24-25 0.007101302147126737 26-27 0.03563353183182876 28-29 0.27974856993304137 30-31 0.24396540535438271 32-33 0.25138704168359366 34-35 0.131185541298327 36-37 0.023316289033940493 38-39 0.014262762548535209 40-41 0.007309657248965382 42-43 0.004174930664073511 44-45 0.005133990533156827 46-47 9.263190473635846E-4 48-49 0.0016657763350609552 50-51 0.0023164298718519705 52-53 0.0012108438289242507 54-55 8.20754837965041E-5 56-57 0.001403266472950304 58-59 0.0025573270085947107 60-61 0.011126390085530558 62-63 0.0064738975174017345 64-65 0.0013212020026186764 66-67 0.0017614698271398216 68-69 0.0023501446276797166 70-71 0.003897665265049881 72-73 0.003532240141627619 74-75 0.0035624535380086196 76-77 0.0014894042687706485 78-79 1.0464159295199339E-4 80-81 3.999005894181835E-4 82-83 1.7852257926804197E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 4.5693586072695114E-4 92-93 0.007713144227029221 94-95 0.001000991562868147 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 183.0 20-21 713.0 22-23 1628.0 24-25 3991.0 26-27 5848.0 28-29 9870.0 30-31 21535.0 32-33 28283.0 34-35 41115.0 36-37 58164.0 38-39 69397.0 40-41 72993.0 42-43 86152.0 44-45 101645.0 46-47 101318.0 48-49 90323.0 50-51 80877.0 52-53 79033.0 54-55 87983.0 56-57 95837.0 58-59 95953.0 60-61 97078.0 62-63 95716.0 64-65 98518.0 66-67 108832.0 68-69 97834.0 70-71 92905.0 72-73 89262.0 74-75 90772.0 76-77 92287.0 78-79 98231.0 80-81 100223.0 82-83 97384.0 84-85 98405.0 86-87 103687.0 88-89 110444.0 90-91 116921.0 92-93 124118.0 94-95 140291.0 96-97 212585.0 98-99 881804.0 100-101 6541178.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.51427788092938 #Duplication Level Percentage of deduplicated Percentage of total 1 88.24576401910448 72.81535494087308 2 7.6966129501127 12.701609194151178 3 2.1730181567998503 5.379150720914636 4 0.8710046236272463 2.8748127019821164 5 0.3949888109116771 1.6296108251711998 6 0.2107092798824056 1.0431914443384405 7 0.13010202617398964 0.7514692318414771 8 0.07337550545671355 0.4843621477527131 9 0.05063019368775691 0.3759942484005166 >10 0.15173820128496154 1.789840532362387 >50 0.0017345238107403565 0.09477742829149446 >100 3.021105121725996E-4 0.04939585526569418 >500 1.9598635228666E-5 0.010430728655076013 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 9.415029173409396E-6 0.0 3 0.0 0.0 0.0 1.8830058346818792E-5 0.0 4 0.0 9.415029173409396E-6 0.0 2.824508752022819E-5 0.0 5 0.0 9.415029173409396E-6 0.0 3.7660116693637584E-5 0.0 6 1.6947052512136915E-4 9.415029173409396E-6 0.0 3.7660116693637584E-5 0.0 7 1.7888555429477853E-4 9.415029173409396E-6 0.0 3.7660116693637584E-5 0.0 8 1.7888555429477853E-4 3.7660116693637584E-5 0.0 3.7660116693637584E-5 0.0 9 1.7888555429477853E-4 8.473526256068457E-5 0.0 3.7660116693637584E-5 0.0 10-11 2.353757293352349E-4 8.473526256068457E-5 0.0 4.236763128034229E-5 0.0 12-13 2.4949827309534903E-4 8.473526256068457E-5 0.0 5.178266045375168E-5 0.0 14-15 2.6832833144216784E-4 1.1298035008091276E-4 0.0 5.649017504045638E-5 0.0 16-17 4.236763128034228E-4 1.1298035008091276E-4 0.0 6.590520421386577E-5 0.0 18-19 4.3779885656353694E-4 1.2710289384102686E-4 0.0 8.473526256068457E-5 0.0 20-21 4.425063711502416E-4 1.4122543760114096E-4 0.0 8.473526256068457E-5 0.0 22-23 4.6133642949706044E-4 1.5534798136125502E-4 0.0 1.1298035008091276E-4 0.0 24-25 5.319491482976309E-4 1.7888555429477853E-4 0.0 1.6005549594795974E-4 0.0 26-27 5.554867212311544E-4 1.8830058346818793E-4 0.0 1.8359306888148322E-4 0.0 28-29 5.743167795779732E-4 1.8830058346818793E-4 0.0 3.295260210693289E-4 0.0 30-31 5.978543525114966E-4 2.1654567098841612E-4 0.0 9.367954027542349E-4 0.0 32-33 6.355144692051343E-4 2.1654567098841612E-4 0.0 0.0025514729059939465 0.0 34-35 6.778821004854766E-4 2.636208168554631E-4 0.0 0.004533336546996625 0.0 36-37 6.967121588322953E-4 3.106959627225101E-4 0.0 0.007668541261741954 0.0 38-39 7.01419673419E-4 3.106959627225101E-4 0.0 0.012602016548608477 0.0 40-41 7.532023338727517E-4 3.389410502427383E-4 0.0 0.017596689525102162 0.0 42-43 7.532023338727517E-4 3.671861377629665E-4 0.0 0.022351279257673908 0.0 44-45 7.720323922195706E-4 4.425063711502417E-4 0.0 0.02767077074065022 0.0 46-47 7.908624505663894E-4 4.895815170172887E-4 0.0 0.033818784790886555 0.0 48-49 7.908624505663894E-4 4.895815170172887E-4 0.0 0.03967022542216049 0.0 50-51 8.144000234999128E-4 5.366566628843356E-4 0.0 0.0454840059367408 0.0 52-53 8.285225672600269E-4 5.366566628843356E-4 0.0 0.0511000708386795 0.0 54-55 8.285225672600269E-4 5.366566628843356E-4 0.0 0.05682911609069912 0.0 56-57 8.285225672600269E-4 5.46071692057745E-4 0.0 0.06276058446994703 0.0 58-59 8.285225672600269E-4 5.554867212311544E-4 0.0 0.06800004820494937 0.0 60-61 8.850127423004834E-4 5.601942358178591E-4 0.0 0.07318302176491123 0.0 62-63 9.132578298207115E-4 5.743167795779732E-4 0.0 0.07813532711012458 0.0 64-65 9.132578298207115E-4 7.061271880057047E-4 0.0 0.08330417812632634 0.0 66-67 9.462104319276443E-4 7.249572463525235E-4 0.0 0.08853422683215526 0.0 68-69 9.885780632079867E-4 7.626173630461612E-4 0.0 0.09355714489616918 0.0 70-71 0.0010027006069681008 7.8144742139298E-4 0.0 0.09846708261010217 0.0 72-73 0.0011156809570490136 7.861549359796847E-4 0.0 0.10240727231917401 0.0 74-75 0.0011203884716357183 8.285225672600269E-4 0.0 0.10615445393019095 0.0 76-77 0.0011345110153958323 8.708901985403692E-4 0.0 0.1094120540241906 0.0 78-79 0.001139218529982537 8.850127423004833E-4 0.0 0.1124295708742683 0.0 80-81 0.001139218529982537 8.850127423004833E-4 0.0 0.11366293969598494 0.0 82-83 0.0011627561029160605 8.850127423004833E-4 0.0 0.11414310618382882 0.0 84-85 0.0011815861612628792 8.850127423004833E-4 0.0 0.11438318942775076 0.0 86-87 0.001186293675849584 8.944277714738927E-4 0.0 0.1145149998361785 0.0 88-89 0.0012051237341964027 9.415029173409396E-4 0.0 0.11456207498204554 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14185 0.0 48.014458 1 GTATCAA 25330 0.0 35.90718 1 CTTATAC 9670 0.0 34.11863 1 ATCAACG 31360 0.0 28.461363 3 TCAACGC 31540 0.0 28.298935 4 CAACGCA 32255 0.0 27.69796 5 AACGCAG 32945 0.0 27.23385 6 TATCAAC 33225 0.0 27.157574 2 TATACAC 14005 0.0 26.620148 3 TTATACA 14930 0.0 23.747818 2 ACGCAGA 37910 0.0 23.599771 7 CGCAGAG 38415 0.0 23.27793 8 ACATCTC 16535 0.0 20.33798 8 GCAGAGT 44655 0.0 19.844456 9 ACACATC 17005 0.0 19.776417 6 TACACAT 19110 0.0 19.464466 5 GTACATG 30345 0.0 19.254326 1 TACATGG 30225 0.0 18.867168 2 GAGTACT 26870 0.0 18.709959 12-13 AGAGTAC 40975 0.0 18.52311 10-11 >>END_MODULE