##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139019_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8349889 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51590242696639 34.0 31.0 34.0 31.0 34.0 2 32.65836432077121 34.0 31.0 34.0 31.0 34.0 3 32.65244328397659 34.0 31.0 34.0 31.0 34.0 4 36.20697987721753 37.0 35.0 37.0 35.0 37.0 5 36.14458072436651 37.0 35.0 37.0 35.0 37.0 6 36.169753035040344 37.0 36.0 37.0 35.0 37.0 7 36.119988900451254 37.0 36.0 37.0 35.0 37.0 8 36.10736909197236 37.0 36.0 37.0 35.0 37.0 9 37.81905352274743 39.0 38.0 39.0 35.0 39.0 10-11 37.76357631820015 39.0 38.0 39.0 35.0 39.0 12-13 37.732013982461325 39.0 38.0 39.0 35.0 39.0 14-15 39.08295319853953 40.0 38.0 41.0 36.0 41.0 16-17 39.0568593786097 40.0 38.0 41.0 36.0 41.0 18-19 38.97702969464624 40.0 38.5 41.0 35.0 41.0 20-21 39.03655842343021 40.0 39.0 41.0 35.0 41.0 22-23 38.963862499503904 40.0 38.0 41.0 35.0 41.0 24-25 38.889555638004126 40.0 38.0 41.0 35.0 41.0 26-27 38.80989148459702 40.0 38.0 41.0 35.0 41.0 28-29 38.594102580632054 40.0 38.0 41.0 34.5 41.0 30-31 38.52234582483479 40.0 38.0 41.0 34.0 41.0 32-33 38.45774413763388 40.0 38.0 41.0 34.0 41.0 34-35 38.27095599011524 40.0 38.0 41.0 34.0 41.0 36-37 38.39245533209022 40.0 38.0 41.0 34.0 41.0 38-39 38.508282020347075 40.0 38.0 41.0 34.0 41.0 40-41 38.50080493218759 40.0 38.0 41.0 34.0 41.0 42-43 38.37482360034147 40.0 38.0 41.0 34.0 41.0 44-45 38.31383466772647 40.0 38.0 41.0 34.0 41.0 46-47 38.329687027564574 40.0 38.0 41.0 34.0 41.0 48-49 38.19947691590882 40.0 38.0 41.0 33.0 41.0 50-51 38.130137716310145 40.0 37.5 41.0 33.0 41.0 52-53 38.0561825611408 40.0 37.0 41.0 33.0 41.0 54-55 37.94792873366818 40.0 37.0 41.0 33.0 41.0 56-57 37.79125539719746 40.0 36.5 41.0 33.0 41.0 58-59 37.62911815641806 39.0 36.0 41.0 33.0 41.0 60-61 37.44315928356872 39.0 36.0 41.0 32.5 41.0 62-63 37.225385471458075 39.0 35.0 40.5 32.0 41.0 64-65 36.98432520399767 38.5 35.0 40.0 32.0 41.0 66-67 36.70640620786163 38.0 35.0 40.0 31.5 41.0 68-69 36.39497301292307 37.0 35.0 40.0 31.0 41.0 70-71 36.099267036420784 37.0 35.0 39.5 31.0 41.0 72-73 35.77447712810134 36.0 34.5 39.0 31.0 40.5 74-75 35.451263971358046 36.0 34.0 39.0 31.0 40.0 76-77 34.43926396066094 35.0 33.5 37.0 29.5 39.0 78-79 34.75053968463007 35.0 34.0 37.0 30.0 39.0 80-81 34.59833017363189 35.0 34.0 37.0 30.0 39.0 82-83 34.34128086014453 35.0 34.0 36.0 30.0 38.5 84-85 34.07716711280257 35.0 34.0 36.0 30.0 37.0 86-87 33.83573130552461 35.0 34.0 35.5 30.0 37.0 88-89 33.60064495304953 35.0 33.0 35.0 30.0 36.5 90-91 33.485325786687085 35.0 33.0 35.0 30.0 36.0 92-93 33.412376348783724 35.0 33.0 35.0 30.0 36.0 94-95 33.32863994194508 35.0 33.0 35.0 29.5 36.0 96-97 33.32187016599346 35.0 33.0 35.0 30.0 35.0 98-99 33.3584659280549 34.5 33.0 35.0 30.0 35.0 100-101 32.145852231301106 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 42.0 21 281.0 22 1163.0 23 4146.0 24 10366.0 25 21073.0 26 36877.0 27 57976.0 28 82126.0 29 109604.0 30 139857.0 31 175234.0 32 220601.0 33 284687.0 34 393286.0 35 569432.0 36 949672.0 37 1817419.0 38 2360921.0 39 1067897.0 40 47224.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.990889579490215 21.32776854877951 15.254118946970433 24.42722292475984 2 13.847561326863147 21.977525689263654 41.09910922169145 23.07580376218175 3 16.930332523896276 26.94159502054891 31.37471203027221 24.753360425282604 4 11.973620673466613 19.064364100431717 39.023041311291955 29.938973914809715 5 12.83976447523403 38.06525015673906 35.92383828960109 13.171147078425818 6 29.16907738486248 38.80245699839626 18.887687139297974 13.140778477443282 7 25.67220054071624 33.07872434657865 23.648610615083285 17.60046449762182 8 24.159631685517567 36.91304280654639 21.358242290463473 17.569083217472567 9 25.25174679617306 16.778668571369717 21.495718849350492 36.47386578310673 10-11 23.72894783502069 27.07713826186916 29.268228712412576 19.92568519069757 12-13 24.670390788475245 24.736026399396017 29.275602259575216 21.31798055255352 14-15 21.798789479101877 26.024289101760967 26.995704667009147 25.18121675212801 16-17 21.290777371999862 29.190057181571476 27.570636226197127 21.94852922023154 18-19 21.412857358856634 28.28013551080778 29.34194622382637 20.96506090650922 20-21 22.163125663803303 27.397758123371478 29.31537417547067 21.12374203735455 22-23 21.84423142710121 27.419239308647086 29.14894516648029 21.587584097771416 24-25 21.714134509868245 27.548600178977146 29.23001846203541 21.5072468491192 26-27 21.626960456770586 27.689492686680495 29.170129202597412 21.51341765395151 28-29 21.635591823520155 27.589831673832215 29.125256309502756 21.649320193144874 30-31 21.842246593043868 27.54357812961888 29.156592398730137 21.457582878607116 32-33 21.608887561548638 27.60511967894234 29.15247488781871 21.633517871690316 34-35 21.788998931591983 27.71589348301316 28.981097605732977 21.514009979661886 36-37 21.824159976798235 27.714777060236784 28.946249749957474 21.514813213007507 38-39 21.65111522566801 27.756199709137793 29.00553637392183 21.58714869127237 40-41 21.806446352531225 27.605760471215422 28.934241711245683 21.65355146500767 42-43 21.820234651535188 27.780372533695818 28.62234510788711 21.777047706881884 44-45 21.80197166295612 27.907971878497605 28.455454728100516 21.83460173044576 46-47 21.96079163653497 27.839179165426504 28.153799976334753 22.046229221703776 48-49 22.007844640696224 28.005487884412943 28.041039168933978 21.945628305956856 50-51 21.97231006565494 28.08071821163311 27.96094926857979 21.986022454132158 52-53 22.0527015256153 28.040638514910437 27.928856275950775 21.977803683523486 54-55 22.063674031451587 28.02870306792375 27.851297158377548 22.056325742247115 56-57 22.10249682862797 28.156247378235154 27.73452164151882 22.00673415161805 58-59 21.943999559424824 28.23783036849718 27.890453789780512 21.92771628229748 60-61 22.11027125429498 28.273222925830666 27.707273291272717 21.909232528601635 62-63 22.033048328721378 28.387771209644498 27.68887937315524 21.890301088478886 64-65 22.061665147015223 28.2122939234942 27.743369990473887 21.98267093901669 66-67 22.082863207410373 28.218042581897436 27.602644369835172 22.096449840857023 68-69 22.065322234279165 28.15200831428948 27.66113936436023 22.121530087071125 70-71 22.03833124865139 28.016883292312173 27.737109034420936 22.207676424615503 72-73 22.114017465914827 28.04348027948469 27.665214918731955 22.177287335868524 74-75 21.984628281756606 28.151971828061832 27.63380632579996 22.2295935643816 76-77 22.08211192051658 28.10263686308499 27.59083680748316 22.22441440891527 78-79 21.98688655110183 28.15398957008679 27.596237816289644 22.262886062521734 80-81 22.038528696251568 28.120723041256856 27.627875452521778 22.212872809969795 82-83 22.14238950994571 28.03058552149104 27.72122129690664 22.10580367165661 84-85 22.145282097469288 28.050133849388892 27.69214300115409 22.11244105198773 86-87 22.03742756051728 28.112134922041548 27.6811365079681 22.16930100947307 88-89 22.111393661739058 28.035874771859344 27.584582913636197 22.268148652765404 90-91 22.113240238022335 28.12236476816642 27.655384097752826 22.109010896058418 92-93 22.128474227922755 28.078814589762658 27.70171984055811 22.090991341756478 94-95 21.936336384644754 28.16322847164885 27.75026884822041 22.150166295485985 96-97 21.88605041461015 28.21153798457303 27.76449482047339 22.137916780343428 98-99 22.156594170353795 28.813983549110034 27.79251214760665 21.236910132929513 100-101 22.614042958299375 31.51235399761529 25.018009371560403 20.855593672524932 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3085.0 1 2611.5 2 2929.5 3 3912.0 4 5048.5 5 7282.5 6 9093.0 7 10799.5 8 12283.0 9 12519.0 10 11616.0 11 10651.5 12 11740.5 13 15787.0 14 25601.5 15 39015.5 16 49313.0 17 54343.0 18 54881.0 19 52275.0 20 48113.0 21 44067.5 22 42264.0 23 44707.5 24 51143.0 25 62396.0 26 77631.5 27 94568.5 28 114277.5 29 135355.0 30 155151.0 31 174564.0 32 194082.0 33 212564.0 34 229902.0 35 245611.0 36 262212.5 37 277590.0 38 289616.0 39 298952.0 40 308021.5 41 316829.0 42 320874.5 43 324277.5 44 328702.5 45 333544.0 46 338186.0 47 341489.0 48 343752.5 49 338293.5 50 327477.0 51 318091.5 52 302186.5 53 282087.0 54 264075.0 55 244774.0 56 224754.0 57 203133.5 58 179734.0 59 154458.0 60 128064.5 61 105339.5 62 84677.0 63 66352.0 64 51197.5 65 38184.0 66 29049.0 67 22035.0 68 15720.5 69 11120.5 70 8133.5 71 5973.0 72 4065.0 73 2826.0 74 2171.5 75 1554.5 76 998.5 77 571.5 78 400.0 79 304.0 80 194.5 81 112.0 82 78.5 83 61.5 84 49.5 85 37.5 86 27.0 87 18.0 88 10.0 89 6.5 90 6.0 91 5.0 92 4.5 93 2.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.347389767696312E-4 4 2.0359552085063646E-4 5 2.874289706126632E-4 6 3.113813848303852E-4 7 0.002670694185275996 8 8.143820834025458E-4 9 3.7126242037469E-4 10-11 6.586913909873533E-5 12-13 1.1976207108860969E-5 14-15 1.497025888607621E-4 16-17 0.0010000132935898908 18-19 1.796431066329145E-5 20-21 0.0 22-23 0.0029285433622947706 24-25 0.007110415284793098 26-27 0.03620787852754148 28-29 0.27989729723441537 30-31 0.24476862005296876 32-33 0.25227496238374336 34-35 0.13252181194995 36-37 0.02453617095059124 38-39 0.01585051345429594 40-41 0.00910910612697113 42-43 0.0060369185345621 44-45 0.006785796617971416 46-47 0.0014837715006978127 48-49 0.002088221453536692 50-51 0.0026502233325278106 52-53 0.0016774151342457914 54-55 2.5361287801974904E-4 56-57 0.0017579249453944564 58-59 0.0030844606066061735 60-61 0.013039660407696474 62-63 0.008351785566591132 64-65 0.002333509695868851 66-67 0.0015118938628517094 68-69 0.0022571530743570813 70-71 0.0037750907583041647 72-73 0.003416427900648292 74-75 0.0035149256557430266 76-77 0.0016706304966726607 78-79 9.502596109257048E-5 80-81 4.2877985148692346E-4 82-83 7.4787071858036185E-6 84-85 0.0 86-87 0.0 88-89 0.0 90-91 4.4022696530091754E-4 92-93 0.0076188652677472695 94-95 0.0011594616530355597 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 173.0 20-21 593.0 22-23 1345.0 24-25 3325.0 26-27 4559.0 28-29 7559.0 30-31 15946.0 32-33 21844.0 34-35 31571.0 36-37 42351.0 38-39 50935.0 40-41 54510.0 42-43 64954.0 44-45 77717.0 46-47 77496.0 48-49 68794.0 50-51 61341.0 52-53 60208.0 54-55 64831.0 56-57 68712.0 58-59 69089.0 60-61 68082.0 62-63 67298.0 64-65 71296.0 66-67 77436.0 68-69 73934.0 70-71 72351.0 72-73 69748.0 74-75 70605.0 76-77 72176.0 78-79 76219.0 80-81 78100.0 82-83 76607.0 84-85 77399.0 86-87 80773.0 88-89 86984.0 90-91 91906.0 92-93 98043.0 94-95 111203.0 96-97 169484.0 98-99 710404.0 100-101 5201988.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.53035481190197 #Duplication Level Percentage of deduplicated Percentage of total 1 89.9391555307804 76.92527884030483 2 7.064685355544128 12.084900901882744 3 1.6945388518811593 4.348035277318457 4 0.6264932123414698 2.143367469552566 5 0.2630201976308376 1.1248105413031058 6 0.13622126689545974 0.6990631974297281 7 0.08028219000995031 0.48065949376393075 8 0.0485701200950089 0.3323375683986241 9 0.03439294935572134 0.2647477045280359 >10 0.11037744206641273 1.436590536273318 >50 0.0019565305113456158 0.10795616654225046 >100 3.0635288806414135E-4 0.052252302702332186 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.1976207108860969E-5 0.0 1.1976207108860969E-5 0.0 3 0.0 1.1976207108860969E-5 0.0 2.3952414217721938E-5 0.0 4 0.0 4.7904828435443876E-5 0.0 2.3952414217721938E-5 0.0 5 0.0 5.988103554430484E-5 0.0 3.59286213265829E-5 0.0 6 0.0 5.988103554430484E-5 0.0 3.59286213265829E-5 0.0 7 0.0 5.988103554430484E-5 0.0 5.988103554430484E-5 0.0 8 0.0 5.988103554430484E-5 0.0 5.988103554430484E-5 0.0 9 0.0 1.0778586397974872E-4 0.0 5.988103554430484E-5 0.0 10-11 1.1976207108860969E-5 1.0778586397974872E-4 0.0 7.18572426531658E-5 0.0 12-13 1.1976207108860969E-5 1.3173827819747065E-4 0.0 1.0778586397974872E-4 0.0 14-15 1.1976207108860969E-5 1.8563121018734503E-4 0.0 1.1976207108860969E-4 1.7964310663291454E-5 16-17 1.1976207108860969E-5 1.916193137417755E-4 0.0 1.1976207108860969E-4 2.3952414217721938E-5 18-19 1.1976207108860969E-5 1.9760741729620598E-4 0.0 1.1976207108860969E-4 2.3952414217721938E-5 20-21 1.1976207108860969E-5 2.0359552085063646E-4 0.0 1.1976207108860969E-4 2.3952414217721938E-5 22-23 1.1976207108860969E-5 2.2155983151392791E-4 0.0 1.2575017464304018E-4 2.3952414217721938E-5 24-25 1.1976207108860969E-5 2.4551224573164985E-4 0.0 1.7365500307848402E-4 2.3952414217721938E-5 26-27 1.1976207108860969E-5 2.634765563949413E-4 0.0 2.754527635038023E-4 2.3952414217721938E-5 28-29 1.1976207108860969E-5 2.634765563949413E-4 0.0 4.491077665822863E-4 2.3952414217721938E-5 30-31 1.1976207108860969E-5 2.874289706126632E-4 0.0 0.0010060013971443214 2.3952414217721938E-5 32-33 1.1976207108860969E-5 2.874289706126632E-4 0.0 0.002389253318217763 2.3952414217721938E-5 34-35 1.1976207108860969E-5 3.2335759193924613E-4 0.0 0.004616827840465904 2.3952414217721938E-5 36-37 1.1976207108860969E-5 3.6527431682025955E-4 0.0 0.00754501047858241 2.3952414217721938E-5 38-39 1.1976207108860969E-5 4.071910417012729E-4 0.0 0.012083992972840716 2.3952414217721938E-5 40-41 1.1976207108860969E-5 4.1916724881013387E-4 0.0 0.016694832709752187 2.3952414217721938E-5 42-43 1.1976207108860969E-5 4.491077665822863E-4 0.0 0.02127573192889151 2.3952414217721938E-5 44-45 1.1976207108860969E-5 5.030006985721607E-4 0.0 0.026665025127878945 2.3952414217721938E-5 46-47 1.1976207108860969E-5 5.269531127898826E-4 0.0 0.032641152475200566 3.59286213265829E-5 48-49 1.1976207108860969E-5 5.269531127898826E-4 0.0 0.03860530361541333 3.59286213265829E-5 50-51 1.1976207108860969E-5 6.467151838784923E-4 0.0 0.04412034698904381 3.59286213265829E-5 52-53 1.1976207108860969E-5 6.467151838784923E-4 0.0 0.04997072416172239 4.790482843544387E-5 54-55 1.1976207108860969E-5 6.527032874329228E-4 0.0 0.05601870875169718 5.988103554430484E-5 56-57 1.1976207108860969E-5 6.586913909873533E-4 0.0 0.06163554988575297 5.988103554430484E-5 58-59 1.1976207108860969E-5 6.586913909873533E-4 0.0 0.06685717618521636 5.988103554430484E-5 60-61 1.1976207108860969E-5 6.586913909873533E-4 0.0 0.07225844559131264 6.586913909873533E-5 62-63 1.1976207108860969E-5 6.646794945417837E-4 0.0 0.07740821464812286 7.18572426531658E-5 64-65 1.1976207108860969E-5 7.125843229772276E-4 0.0 0.08253403129071535 7.18572426531658E-5 66-67 1.1976207108860969E-5 7.305486336405191E-4 0.0 0.08800715793946481 7.18572426531658E-5 68-69 1.1976207108860969E-5 7.664772549671019E-4 0.0 0.09361801096996619 7.18572426531658E-5 70-71 1.1976207108860969E-5 7.784534620759629E-4 0.0 0.09867795847345995 7.18572426531658E-5 72-73 1.1976207108860969E-5 7.784534620759629E-4 0.0 0.1029295119971056 7.18572426531658E-5 74-75 1.1976207108860969E-5 8.024058762936849E-4 0.0 0.10667806482217906 7.18572426531658E-5 76-77 1.1976207108860969E-5 8.562988082835591E-4 0.0 0.1104146414401437 7.18572426531658E-5 78-79 1.1976207108860969E-5 8.742631189468506E-4 0.0 0.11339671701025009 7.18572426531658E-5 80-81 1.1976207108860969E-5 8.742631189468506E-4 0.0 0.11482188565620453 7.784534620759628E-5 82-83 1.1976207108860969E-5 8.742631189468506E-4 0.0 0.11522308859435137 8.383344976202677E-5 84-85 1.1976207108860969E-5 8.862393260557115E-4 0.0 0.11549854135785517 8.383344976202677E-5 86-87 1.1976207108860969E-5 8.982155331645726E-4 0.0 0.11561231532538935 8.383344976202677E-5 88-89 1.1976207108860969E-5 9.221679473822946E-4 0.0 0.11565423205027037 8.383344976202677E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10895 0.0 48.964127 1 GTATCAA 19210 0.0 37.50078 1 ATCAACG 24415 0.0 29.034607 3 TCAACGC 24565 0.0 28.839941 4 CAACGCA 25045 0.0 28.253128 5 TATCAAC 25485 0.0 28.100094 2 AACGCAG 25750 0.0 27.579039 6 ACGCAGA 29605 0.0 23.886795 7 CGCAGAG 31100 0.0 22.820465 8 GTGGTAT 5545 0.0 21.011465 1 GTACATG 23835 0.0 20.913317 1 TACATGG 23750 0.0 20.467299 2 GCAGAGT 34720 0.0 20.268818 9 CTTATAC 5205 0.0 20.170172 1 ACATGGG 23960 0.0 19.664608 3 AGAGTAC 31750 0.0 18.986227 10-11 TGGTATC 5630 0.0 18.875193 2 GAGTACT 21740 0.0 18.669127 12-13 CAGAGTA 33845 0.0 18.03165 10-11 CATGGGG 18085 0.0 17.226912 4 >>END_MODULE