##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139018_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 13298160 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.42054171404164 34.0 31.0 34.0 31.0 34.0 2 32.578827446804674 34.0 31.0 34.0 31.0 34.0 3 32.56945276639776 34.0 31.0 34.0 31.0 34.0 4 36.15709481612494 37.0 35.0 37.0 35.0 37.0 5 36.08856571134653 37.0 35.0 37.0 35.0 37.0 6 36.113337108291674 37.0 36.0 37.0 35.0 37.0 7 36.060702683679544 37.0 35.0 37.0 35.0 37.0 8 36.04627121346111 37.0 35.0 37.0 35.0 37.0 9 37.73435460244124 39.0 38.0 39.0 35.0 39.0 10-11 37.671854038453446 39.0 37.0 39.0 35.0 39.0 12-13 37.63627095778664 39.0 37.0 39.0 35.0 39.0 14-15 38.946479475355986 40.0 38.0 41.0 35.0 41.0 16-17 38.92102351001943 40.0 38.0 41.0 35.0 41.0 18-19 38.84780604985953 40.0 38.0 41.0 35.0 41.0 20-21 38.90356215742568 40.0 38.0 41.0 35.0 41.0 22-23 38.82925168199422 40.0 38.0 41.0 35.0 41.0 24-25 38.74546891981905 40.0 38.0 41.0 34.5 41.0 26-27 38.65859059803866 40.0 38.0 41.0 34.5 41.0 28-29 38.44189880153094 40.0 38.0 41.0 34.0 41.0 30-31 38.36022168230463 40.0 38.0 41.0 34.0 41.0 32-33 38.28749713892418 40.0 38.0 41.0 34.0 41.0 34-35 38.097287639653814 40.0 38.0 41.0 33.0 41.0 36-37 38.22212909502562 40.0 38.0 41.0 34.0 41.0 38-39 38.341245015257165 40.0 38.0 41.0 34.0 41.0 40-41 38.33489826847905 40.0 38.0 41.0 34.0 41.0 42-43 38.20711614563725 40.0 38.0 41.0 33.0 41.0 44-45 38.13766137594604 40.0 38.0 41.0 33.0 41.0 46-47 38.14523050222441 40.0 38.0 41.0 33.0 41.0 48-49 38.01429269603692 40.0 37.0 41.0 33.0 41.0 50-51 37.94394831003882 40.0 37.0 41.0 33.0 41.0 52-53 37.86152293757484 40.0 37.0 41.0 33.0 41.0 54-55 37.74181339294833 40.0 36.5 41.0 33.0 41.0 56-57 37.57589093504797 39.5 36.0 41.0 32.5 41.0 58-59 37.408844365042775 39.0 36.0 41.0 32.0 41.0 60-61 37.21673964618098 39.0 35.0 40.5 32.0 41.0 62-63 36.98879941171214 38.5 35.0 40.0 32.0 41.0 64-65 36.73784346996789 38.0 35.0 40.0 31.0 41.0 66-67 36.45020799300543 37.5 35.0 40.0 31.0 41.0 68-69 36.13494977950891 37.0 35.0 40.0 31.0 41.0 70-71 35.83727457279264 36.5 34.5 39.0 31.0 41.0 72-73 35.511355438563534 36.0 34.0 39.0 30.5 40.0 74-75 35.189424652884824 35.5 34.0 38.5 30.0 40.0 76-77 34.19563447142793 35.0 33.0 37.0 29.0 39.0 78-79 34.528675855924945 35.0 34.0 37.0 30.0 39.0 80-81 34.39632752007807 35.0 34.0 36.5 30.0 39.0 82-83 34.15292307225684 35.0 34.0 36.0 30.0 37.5 84-85 33.898349445512764 35.0 34.0 36.0 30.0 37.0 86-87 33.66573518603245 35.0 33.0 35.0 29.5 37.0 88-89 33.433257239386926 35.0 33.0 35.0 29.0 36.0 90-91 33.321138615566056 35.0 33.0 35.0 29.0 36.0 92-93 33.25694452664116 35.0 33.0 35.0 29.0 36.0 94-95 33.176368837957 34.5 33.0 35.0 29.0 35.5 96-97 33.1740316219141 34.0 33.0 35.0 29.0 35.0 98-99 33.220381539757106 34.0 33.0 35.0 29.0 35.0 100-101 31.980848673639713 33.0 31.0 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 17.0 20 84.0 21 521.0 22 2264.0 23 7608.0 24 18432.0 25 37462.0 26 65204.0 27 100724.0 28 143023.0 29 188746.0 30 240129.0 31 300055.0 32 377097.0 33 488860.0 34 675691.0 35 975091.0 36 1635053.0 37 3022662.0 38 3491211.0 39 1469886.0 40 58335.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.29074209305846 21.871256295139244 15.68597813967755 24.152023472124746 2 13.80435649842305 22.223056924354253 40.90392375424655 23.068662822976147 3 16.78171948688891 27.338727840341043 31.506497735201922 24.373054937568124 4 12.065873302224208 19.132150420502605 38.94844193929765 29.85353433797554 5 12.77298804115773 38.364181075355816 35.67549824749532 13.187332635991131 6 29.082926835137446 38.885168232651026 18.770704035724716 13.261200896486816 7 25.61735142201933 33.27542908365021 23.652291748682018 17.454927745648437 8 24.413556803002777 36.704899973988745 21.227746147924538 17.653797075083936 9 25.53100210999893 16.61101339882033 21.49616588401165 36.36181860716909 10-11 23.914646594895505 26.998140454998033 29.089135022624017 19.998077927482445 12-13 24.854113220969374 24.783385364360694 29.201554651754325 21.160946762915607 14-15 22.008461261355023 25.986594135696695 26.978026355649632 25.026918247298653 16-17 21.33231468617211 29.076236445407194 27.60513879142771 21.986310076992986 18-19 21.44496548149881 28.123217210864198 29.568375952204207 20.863441355432784 20-21 22.26761907945421 27.157451057856736 29.508792351559755 21.066137511129305 22-23 22.02411412422342 27.161707771928445 29.33330565606116 21.48087244778698 24-25 21.740739576042127 27.386154834120056 29.364715446518364 21.508390143319453 26-27 21.682723735871406 27.49899926423241 29.32208499052943 21.49619200936675 28-29 21.609670944463897 27.420275247099934 29.307852111035505 21.66220169740066 30-31 21.821913172334906 27.409357519776158 29.27848694568117 21.49024236220777 32-33 21.6672066797421 27.565986113862934 29.186354801163095 21.58045240523187 34-35 21.79499376635275 27.605494228119852 29.16021888360017 21.43929312192723 36-37 21.831565214886613 27.560593930118475 29.09789412095115 21.509946734043755 38-39 21.69606620816561 27.661445283406227 29.098366661247827 21.544121847180335 40-41 21.818500361178753 27.503788911427264 29.061643740672118 21.61606698672187 42-43 21.825671459235856 27.666812963207736 28.701577861718587 21.805937715837818 44-45 21.906488274640466 27.830027974750326 28.44870801390543 21.814775736703776 46-47 22.0360721303422 27.802509012813154 28.16033669451603 22.00108216232862 48-49 22.02171677911575 27.964908026266983 27.995480470218965 22.017894724398303 50-51 22.014101909223584 27.98902464977503 27.909216813892947 22.087656627108444 52-53 22.078653036075064 27.997826948278053 27.806882841208676 22.116637174438207 54-55 22.107029064693233 27.921236799080162 27.799539452075777 22.172194684150824 56-57 22.109032419852355 28.056108144148144 27.722304160620403 22.112555275379098 58-59 21.98374330850083 28.131205668290526 27.83178109877143 22.053269924437213 60-61 22.206497861919374 28.08655929405961 27.741389485902744 21.96555335811827 62-63 22.09880907156354 28.165566206834598 27.701555157686915 22.034069563914947 64-65 22.09773859667091 28.077697894753534 27.684083184811474 22.140480323764084 66-67 22.151880567394493 28.040824799665252 27.560956550105715 22.246338082834537 68-69 22.057625781801242 27.977386906086178 27.68923349126166 22.275753820850916 70-71 22.10124617289364 27.83321327592519 27.73376557539172 22.331774975789457 72-73 22.20290796187374 27.893755243934205 27.625959713172282 22.27737708101977 74-75 22.03627263356946 27.977768890209926 27.667504308138312 22.318454168082305 76-77 22.1831877363201 27.86501162842223 27.64010866898763 22.31169196627004 78-79 22.120860674175887 27.814788226782188 27.628908153943815 22.435442945098107 80-81 22.131661714714618 27.888594782775606 27.619292342463993 22.360451160045784 82-83 22.15850376879175 27.827834497256244 27.74509695285087 22.268564781101137 84-85 22.23578018853985 27.81570183499038 27.645036385967703 22.30348159050207 86-87 22.135429503995134 27.83294134228349 27.702621943925603 22.329007209795776 88-89 22.16793977632645 27.68045265158258 27.70683717034063 22.44477040175034 90-91 22.197535876584578 27.75750232657116 27.7464499575876 22.298511839256665 92-93 22.26612011679323 27.695477905449028 27.70365318756231 22.334748790195434 94-95 22.111103755659244 27.650786475944393 27.831851267246666 22.406258501149694 96-97 22.11102319317419 27.718455611870557 27.80569238279523 22.364828812160027 98-99 22.27122967693407 28.31098229759661 27.86675584073743 21.55103218473189 100-101 22.726498669872303 30.99131370915299 25.05816571168806 21.224021909286652 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4178.0 1 3663.5 2 4666.5 3 6483.5 4 8348.0 5 11955.5 6 14951.5 7 18455.5 8 21854.0 9 22667.5 10 20936.0 11 18834.0 12 20469.0 13 27954.5 14 46411.5 15 71490.5 16 90827.0 17 99423.0 18 98439.5 19 91520.5 20 82184.5 21 73230.0 22 67950.0 23 70201.5 24 81469.0 25 101019.0 26 125798.0 27 152200.5 28 181945.5 29 214683.0 30 244802.5 31 274295.0 32 305952.5 33 338302.5 34 365897.5 35 389914.5 36 418500.5 37 445532.0 38 464111.0 39 476214.0 40 485321.5 41 494569.5 42 502197.0 43 511651.0 44 519970.5 45 526138.0 46 528557.5 47 526656.5 48 528085.5 49 523088.5 50 511520.0 51 498698.5 52 479875.0 53 456443.5 54 432768.0 55 405633.0 56 374983.0 57 339317.0 58 299429.0 59 257212.5 60 212994.5 61 173626.0 62 138324.5 63 106328.5 64 79279.0 65 59467.0 66 45636.5 67 35097.5 68 26908.0 69 19354.5 70 13493.0 71 9722.0 72 6836.5 73 4644.5 74 3077.5 75 1966.0 76 1316.5 77 869.5 78 578.5 79 391.0 80 250.5 81 155.5 82 117.5 83 85.5 84 57.0 85 44.0 86 38.0 87 32.5 88 24.0 89 13.0 90 6.0 91 5.0 92 4.5 93 3.5 94 2.5 95 2.0 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 2.2559511992636576E-5 2 2.2559511992636576E-5 3 4.887894265071257E-4 4 1.955157706028503E-4 5 3.7599186654394294E-4 6 2.1055544526460805E-4 7 0.0025943438791532062 8 5.188687758306412E-4 9 3.684720292130641E-4 10-11 1.0903764129774344E-4 12-13 3.759918665439429E-5 14-15 1.8423601460653205E-4 16-17 9.81338771679691E-4 18-19 1.1279755996318288E-5 20-21 0.0 22-23 0.0026473211666864717 24-25 0.006954689614158409 26-27 0.03497305035592435 28-29 0.27162119552034386 30-31 0.2363075005022265 32-33 0.2435059017098074 34-35 0.12712476514310544 36-37 0.021862612406809995 38-39 0.01346940711655991 40-41 0.006915055245747049 42-43 0.004308813726957494 44-45 0.004879670342463247 46-47 9.094382929511098E-4 48-49 0.0014337491858281521 50-51 0.0019178009559512547 52-53 9.503051332315612E-4 54-55 7.36889236009206E-5 56-57 0.0011439857181023431 58-59 0.002333892592345774 60-61 0.010457195221238454 62-63 0.0062319938678538815 64-65 0.0017312370966056866 66-67 0.0016148173213011983 68-69 0.0027393253610505214 70-71 0.0044720932753916365 72-73 0.00393880342370987 74-75 0.004089158290368555 76-77 0.001767872655792864 78-79 6.468603868751842E-5 80-81 5.472170947252902E-4 82-83 1.8941741926153537E-5 84-85 0.0 86-87 9.713366802033766E-6 88-89 0.0 90-91 5.54864834926212E-4 92-93 0.00836765877022851 94-95 0.0011326118302908915 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 302.0 20-21 991.0 22-23 2074.0 24-25 5748.0 26-27 7694.0 28-29 12001.0 30-31 26123.0 32-33 34385.0 34-35 49609.0 36-37 68161.0 38-39 83391.0 40-41 90458.0 42-43 108078.0 44-45 130532.0 46-47 129768.0 48-49 113297.0 50-51 100005.0 52-53 96424.0 54-55 104720.0 56-57 109772.0 58-59 110321.0 60-61 109706.0 62-63 108488.0 64-65 115635.0 66-67 123529.0 68-69 122829.0 70-71 121334.0 72-73 117435.0 74-75 120066.0 76-77 121517.0 78-79 130335.0 80-81 132320.0 82-83 129838.0 84-85 132258.0 86-87 138870.0 88-89 148602.0 90-91 159382.0 92-93 168495.0 94-95 188327.0 96-97 276388.0 98-99 1128587.0 100-101 8120365.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.02330892438331 #Duplication Level Percentage of deduplicated Percentage of total 1 87.65878450496432 71.02404776881667 2 7.850207695510004 12.720996064677564 3 2.3209445065229426 5.641518112450762 4 0.9561630285528406 3.0988596977804295 5 0.45108480625765235 1.8274191804254678 6 0.2601358902253277 1.2646242357627715 7 0.1467804560571388 0.83248467646256 8 0.09201796961970084 0.5964480303273231 9 0.06667362036524892 0.4861905605964556 >10 0.19433644152437565 2.288604256842777 >50 0.002502121286268744 0.1388539911522589 >100 2.9923662804315614E-4 0.04587541263345623 >500 6.972248617652728E-5 0.03407801207142401 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.759918665439429E-5 0.0 0.0 0.0 3 0.0 3.759918665439429E-5 0.0 0.0 0.0 4 0.0 8.271821063966744E-5 0.0 0.0 0.0 5 0.0 9.02380479705463E-5 0.0 0.0 0.0 6 0.0 9.02380479705463E-5 0.0 0.0 7.519837330878859E-6 7 0.0 9.775788530142517E-5 0.0 0.0 7.519837330878859E-6 8 7.519837330878859E-6 1.278372346249406E-4 0.0 0.0 1.5039674661757717E-5 9 7.519837330878859E-6 1.8799593327197147E-4 0.0 0.0 2.2559511992636576E-5 10-11 2.2559511992636576E-5 1.8799593327197147E-4 0.0 0.0 2.2559511992636576E-5 12-13 2.2559511992636576E-5 1.8799593327197147E-4 0.0 0.0 3.0079349323515434E-5 14-15 2.6319430658076003E-5 2.857538185733966E-4 0.0 0.0 6.391861731247029E-5 16-17 3.759918665439429E-5 2.932736559042755E-4 0.0 7.519837330878859E-6 8.271821063966744E-5 18-19 5.263886131615201E-5 3.346327612241092E-4 0.0 7.519837330878859E-6 1.015178039668646E-4 20-21 9.02380479705463E-5 3.7975178520938233E-4 0.0 7.519837330878859E-6 1.0527772263230401E-4 22-23 1.2031739729406174E-4 4.2863072786009494E-4 0.0 7.519837330878859E-6 1.3911699062125888E-4 24-25 1.541566652830166E-4 4.6998983317992867E-4 0.0 1.5039674661757717E-5 1.6543642127933488E-4 26-27 1.9551577060285033E-4 4.887894265071258E-4 0.0 5.263886131615201E-5 1.7295625861021374E-4 28-29 1.9551577060285033E-4 5.000691825034441E-4 0.0 2.5943438791532064E-4 1.8799593327197147E-4 30-31 1.9551577060285033E-4 6.015869864703086E-4 0.0 9.36219747694418E-4 1.9927568926828975E-4 32-33 1.9551577060285033E-4 6.053469051357481E-4 0.0 0.002270990873925415 2.180752825954869E-4 34-35 1.9551577060285033E-4 7.068647091026128E-4 0.0 0.0042111089052921605 2.331149572572446E-4 36-37 1.9927568926828975E-4 8.121424317349168E-4 0.0 0.007106246277680521 2.331149572572446E-4 38-39 2.0303560793372917E-4 8.610213743856293E-4 0.0 0.011200797704344059 2.4439471325356287E-4 40-41 2.4439471325356287E-4 9.662990970179333E-4 0.0 0.015915735710805103 2.556744692498812E-4 42-43 2.556744692498812E-4 0.0010001383650068882 0.0 0.020217082664067812 2.5943438791532064E-4 44-45 2.556744692498812E-4 0.0011317355182972682 0.0 0.02523281416376401 2.669542252461995E-4 46-47 2.707141439116389E-4 0.0012407731595950116 0.0 0.030970450047224582 2.7823398124251776E-4 48-49 2.707141439116389E-4 0.0012520529155913298 0.0 0.03661032804538372 2.932736559042755E-4 50-51 2.744740625770783E-4 0.0013648504755545128 0.0 0.0420058113302893 2.9703357456971487E-4 52-53 2.819938999079572E-4 0.0013798901502162706 0.0 0.047660729003110205 3.195930865623515E-4 54-55 2.8575381857339665E-4 0.0013949298248780283 0.0 0.053247968139953195 3.534323545513064E-4 56-57 2.8575381857339665E-4 0.0014212492555361043 0.0 0.05878256841548003 3.7599186654394294E-4 58-59 2.932736559042755E-4 0.0014362889301978619 0.0 0.06405773430309156 3.9479145987114005E-4 60-61 3.0831333056603315E-4 0.001481407954183135 0.0 0.06905842612812599 4.0607121586745833E-4 62-63 3.1583316789691204E-4 0.0015114873035066505 0.0 0.07379216372791424 4.361505651909738E-4 64-65 3.195930865623515E-4 0.001699483236778622 0.0 0.07875901628495972 4.361505651909738E-4 66-67 3.271129238932303E-4 0.0017521220980947741 0.0 0.08368074981801994 4.399104838564132E-4 68-69 3.421525985549881E-4 0.001804760959410926 0.0 0.08880175904034844 4.474303211872921E-4 70-71 3.459125172204275E-4 0.0018461200647307597 0.0 0.09380997070271377 4.925493451725652E-4 72-73 3.459125172204275E-4 0.0018536399020616387 0.0 0.09758492904281495 5.489481251541566E-4 74-75 3.459125172204275E-4 0.0018686795767233963 0.0 0.10094253641105236 5.489481251541566E-4 76-77 3.459125172204275E-4 0.0019589176246939425 0.0 0.1038639932140988 5.489481251541566E-4 78-79 3.459125172204275E-4 0.0019927568926828977 0.0 0.1066500929451894 5.489481251541566E-4 80-81 3.459125172204275E-4 0.0020002767300137765 0.0 0.10792846529143882 5.60227881150475E-4 82-83 3.459125172204275E-4 0.002015316404675534 0.0 0.10833453650730628 5.940671491394299E-4 84-85 3.459125172204275E-4 0.002026596160671852 0.0 0.1086240502445451 5.940671491394299E-4 86-87 3.459125172204275E-4 0.002082994940653444 0.0 0.10872932796717741 5.940671491394299E-4 88-89 3.459125172204275E-4 0.002225871849940142 0.0 0.10876692715383181 5.940671491394299E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19100 0.0 51.01422 1 GTATCAA 35205 0.0 37.321213 1 ATCAACG 45390 0.0 28.282492 3 TCAACGC 45585 0.0 28.198584 4 TATCAAC 46285 0.0 28.010714 2 CAACGCA 46290 0.0 27.769114 5 AACGCAG 47850 0.0 26.925854 6 ACGCAGA 55070 0.0 23.364851 7 CGCAGAG 55940 0.0 22.97825 8 GTACATG 43975 0.0 20.379396 1 GCAGAGT 64010 0.0 19.968435 9 GTGGTAT 9155 0.0 19.680136 1 TACATGG 44865 0.0 19.567928 2 GAGTACT 36940 0.0 19.003042 12-13 AGAGTAC 58305 0.0 18.944973 10-11 ACATGGG 45345 0.0 18.845592 3 TGGTATC 9375 0.0 18.447832 2 CAGAGTA 62685 0.0 17.838146 10-11 AGTACTT 41075 0.0 17.234846 12-13 CATGGGG 32825 0.0 17.049234 4 >>END_MODULE