##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139016_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 20448993 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.480136601347557 33.0 32.0 34.0 25.0 34.0 2 31.911482389377316 33.0 32.0 33.0 28.0 34.0 3 32.54078848772651 33.0 33.0 34.0 31.0 34.0 4 32.851800086194956 33.0 33.0 34.0 32.0 34.0 5 32.98519531010647 33.0 33.0 34.0 32.0 34.0 6 36.61031753495148 38.0 37.0 38.0 34.0 38.0 7 37.091454283347844 38.0 38.0 38.0 36.0 38.0 8 37.24852627217389 38.0 38.0 38.0 36.0 38.0 9 37.24181073366302 38.0 38.0 38.0 36.0 38.0 10-11 37.3110802082039 38.0 38.0 38.0 37.0 38.0 12-13 37.325251639530606 38.0 38.0 38.0 37.0 38.0 14-15 37.340207706071396 38.0 38.0 38.0 37.0 38.0 16-17 37.301237645296276 38.0 38.0 38.0 37.0 38.0 18-19 37.2824264989479 38.0 38.0 38.0 37.0 38.0 20-21 37.34213245075932 38.0 38.0 38.0 37.0 38.0 22-23 37.355525254455515 38.0 38.0 38.0 37.0 38.0 24-25 37.35734018050091 38.0 38.0 38.0 37.0 38.0 26-27 37.26691612596486 38.0 38.0 38.0 37.0 38.0 28-29 37.18503059195496 38.0 38.0 38.0 36.5 38.0 30-31 37.25921076496209 38.0 38.0 38.0 37.0 38.0 32-33 37.280828201457965 38.0 38.0 38.0 37.0 38.0 34-35 37.2342891357885 38.0 38.0 38.0 37.0 38.0 36-37 37.23772246801657 38.0 38.0 38.0 37.0 38.0 38-39 37.2313905608598 38.0 38.0 38.0 37.0 38.0 40-41 37.187244660913386 38.0 38.0 38.0 36.5 38.0 42-43 37.17841863619621 38.0 38.0 38.0 36.0 38.0 44-45 37.106294712483255 38.0 38.0 38.0 36.0 38.0 46-47 37.07502763115069 38.0 38.0 38.0 36.0 38.0 48-49 37.045028206932415 38.0 38.0 38.0 36.0 38.0 50-51 37.032096973284126 38.0 38.0 38.0 36.0 38.0 52-53 37.00653814989279 38.0 38.0 38.0 36.0 38.0 54-55 36.96249962945592 38.0 38.0 38.0 36.0 38.0 56-57 36.9451827978436 38.0 38.0 38.0 36.0 38.0 58-59 36.948766231852105 38.0 38.0 38.0 36.0 38.0 60-61 36.95583178377735 38.0 38.0 38.0 36.0 38.0 62-63 36.890637962702286 38.0 38.0 38.0 35.5 38.0 64-65 36.914854594438 38.0 38.0 38.0 36.0 38.0 66-67 36.92450093175522 38.0 38.0 38.0 36.0 38.0 68-69 36.891285291043374 38.0 38.0 38.0 35.5 38.0 70-71 36.83985151116862 38.0 38.0 38.0 35.0 38.0 72-73 36.85479655169443 38.0 38.0 38.0 35.0 38.0 74-75 36.874201728489695 38.0 38.0 38.0 35.0 38.0 76-77 36.798888713150276 38.0 38.0 38.0 35.0 38.0 78-79 36.818321323793015 38.0 38.0 38.0 35.0 38.0 80-81 36.79093104481794 38.0 38.0 38.0 35.0 38.0 82-83 36.74986400761237 38.0 38.0 38.0 35.0 38.0 84-85 36.76361479073134 38.0 38.0 38.0 35.0 38.0 86-87 36.78005919161933 38.0 38.0 38.0 35.0 38.0 88-89 36.686684338752286 38.0 38.0 38.0 34.5 38.0 90-91 36.63507629306356 38.0 38.0 38.0 34.0 38.0 92-93 36.67896655276474 38.0 38.0 38.0 34.0 38.0 94-95 36.660684223861196 38.0 38.0 38.0 34.0 38.0 96-97 36.60874331498812 38.0 38.0 38.0 34.0 38.0 98-99 36.61883073887759 38.0 38.0 38.0 34.0 38.0 100 34.74807938722219 38.0 34.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 12.0 19 57.0 20 167.0 21 508.0 22 1616.0 23 4445.0 24 10021.0 25 19802.0 26 35285.0 27 57740.0 28 90209.0 29 132091.0 30 180932.0 31 240717.0 32 314821.0 33 425912.0 34 627266.0 35 1105470.0 36 2914672.0 37 1.4287246E7 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.044006078930146 21.375223709059902 14.340813750584196 24.239956461425756 2 13.691037837920838 22.103524659392594 41.53236373662202 22.67307376606455 3 18.00867651526899 26.677025122948596 30.700944540398638 24.61335382138377 4 12.550077678687266 18.473375274787532 39.64013659164728 29.33641045487792 5 13.215643854940733 38.115583395404244 35.481400073267395 13.187372676387628 6 29.085524407632267 38.67861716450328 19.166771276964333 13.069087150900113 7 25.73170314845702 33.12848682004457 23.7446543148459 17.39515571665251 8 23.886941523232956 36.972202005252775 21.5901291569712 17.550727314543067 9 25.31713419824634 17.180303206128535 21.69333228291486 35.80923031271027 10-11 23.664104144394788 27.11846739837018 29.403438105729705 19.81399035150533 12-13 24.638428405741056 24.698536500061397 29.461546101561087 21.20148899263646 14-15 21.826681147575336 26.012862833881357 27.149813685202005 25.010642333341305 16-17 21.323734621064226 29.130148364763 27.777035279927965 21.76908173424481 18-19 21.345532760464046 28.310257135889284 29.559714749767874 20.784495353878796 20-21 22.177777596294625 27.452761694988187 29.40600181678218 20.96345889193501 22-23 21.932835846077428 27.35924954674559 29.242468871020566 21.465445736156415 24-25 21.68298561005767 27.478024128293765 29.326585481296753 21.51240478035181 26-27 21.657946515405644 27.590831838454914 29.246713338045733 21.50450830809371 28-29 21.60986880721254 27.61355790490269 29.276545707103352 21.500027580781417 30-31 21.842172912533627 27.499758685445112 29.194214041983173 21.463854360038084 32-33 21.663895416928664 27.604199921908723 29.20365385183117 21.528250809331446 34-35 21.769964352394126 27.639173864903178 29.177658540138317 21.41320324256438 36-37 21.774220329351852 27.522896967363398 29.16603461005195 21.53684809323281 38-39 21.628310799649572 27.69850280920838 29.226957123787596 21.44622926735445 40-41 21.845504470306896 27.57883914852412 29.094876951217945 21.48077942995104 42-43 21.782311807654207 27.624964064880547 28.941854722951497 21.65086940451375 44-45 21.85461908901516 27.748223989582193 28.814491889105238 21.58266503229741 46-47 21.86219023601015 27.672153246512988 28.64652392750955 21.819132589967317 48-49 21.82435528140565 27.80378344372103 28.622686172413225 21.74917510246009 50-51 21.795479834017428 27.897450550382953 28.535082939093755 21.77198667650587 52-53 21.897182009454013 27.880016497356696 28.394087769134146 21.82871372405514 54-55 21.966420357724413 27.803306767227326 28.409066539461275 21.821206335586986 56-57 21.92793833434855 27.872463981665547 28.388296787655293 21.81130089633061 58-59 21.87069680129548 27.931676532180667 28.463632689921642 21.73399397660221 60-61 21.93752744729125 27.92245613782942 28.413211501443204 21.72680491343613 62-63 21.93328331316863 27.948037664871823 28.369111889804632 21.749567132154915 64-65 21.918962353525647 27.905238734106835 28.35789697054937 21.817901941818153 66-67 21.96455359135194 27.912155408103928 28.2737712909848 21.849519709559335 68-69 21.901304260897277 27.85789976067467 28.35877414069101 21.882021837737046 70-71 21.932705513052344 27.69451153912492 28.36128407183145 22.011498875991283 72-73 21.991466647011983 27.704969715714668 28.33520134174637 21.96836229552698 74-75 21.833484060998316 27.833858950292445 28.33697633093546 21.99568065777378 76-77 21.989510820432876 27.780334215525354 28.220948309227968 22.009206654813806 78-79 21.89870751675857 27.782683366131394 28.22971859030796 22.08889052680208 80-81 21.977026758661054 27.806750229656924 28.157219473049132 22.059003538632883 82-83 21.987499253243122 27.79431296330972 28.24651582065424 21.971671962792918 84-85 22.08958042813745 27.77679583224219 28.164685665440842 21.968938074179515 86-87 21.954329100420303 27.835621545943205 28.18270304015443 22.027346313482067 88-89 22.019835911782348 27.780861996932458 28.112612280584475 22.08668981070071 90-91 22.11421108945073 27.835959634593614 28.092040382183814 21.957788893771838 92-93 22.132375651114366 27.790017661407205 28.098369415444807 21.979237272033618 94-95 21.968632768243843 27.915744023953092 28.10877757953939 22.006845628263672 96-97 22.050749698651455 28.03700991100141 28.160857687402785 21.75138270294435 98-99 23.186308188482187 29.886438696443378 28.36076017572851 18.566492939345924 100 22.00502112995923 30.802039380015238 22.38745702891663 24.805482461108898 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3983.0 1 3591.0 2 4506.0 3 6487.5 4 8415.5 5 11280.0 6 13872.5 7 18162.5 8 23818.5 9 27193.5 10 27836.5 11 27977.5 12 30258.0 13 35891.0 14 47243.5 15 60382.5 16 69316.0 17 73023.5 18 71115.0 19 66043.5 20 61824.5 21 60991.0 22 66593.0 23 80293.5 24 102356.5 25 134405.0 26 176267.5 27 222378.0 28 269101.0 29 320583.5 30 372670.0 31 423526.0 32 475067.0 33 526297.5 34 577154.0 35 620187.0 36 664551.0 37 708059.0 38 736893.0 39 759048.0 40 784670.5 41 803975.0 42 810374.5 43 819503.0 44 832104.0 45 843660.5 46 844252.5 47 835026.5 48 823742.0 49 804171.0 50 778367.0 51 747791.0 52 709471.0 53 666143.5 54 623419.0 55 578401.0 56 529947.0 57 477572.0 58 423836.0 59 367179.0 60 306143.5 61 247276.5 62 192823.5 63 147035.5 64 110736.0 65 82295.0 66 61047.5 67 45998.5 68 34641.0 69 25307.5 70 18410.0 71 12984.5 72 8721.0 73 5796.0 74 3792.5 75 2282.0 76 1320.0 77 775.5 78 502.5 79 325.0 80 210.5 81 135.0 82 89.5 83 59.0 84 35.5 85 22.5 86 15.0 87 10.5 88 6.5 89 5.5 90 5.5 91 3.5 92 2.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.890216354419017E-5 3 0.0 4 5.868259625302821E-5 5 0.0029634711107779242 6 4.0099774106235937E-4 7 1.1736519250605642E-4 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0010420656716146276 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 1.0016757032840238E-5 44-45 1.0082267013869695E-5 46-47 2.539823931277647E-5 48-49 8.445191169953791E-5 50-51 4.613555450683799E-4 52-53 2.023765755859645E-4 54-55 3.421828612672614E-4 56-57 4.920387472882942E-4 58-59 3.6852703799362637E-4 60-61 1.8700018523704062E-5 62-63 3.5795204599872184E-4 64-65 9.490249934137666E-5 66-67 1.1752919199637135E-4 68-69 4.961856965045455E-4 70-71 1.0288144226212824E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.902176727187928E-4 90-91 0.0 92-93 6.13904067666962E-6 94-95 7.132731322539877E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 115.0 20-21 461.0 22-23 934.0 24-25 1540.0 26-27 3773.0 28-29 10191.0 30-31 31236.0 32-33 40900.0 34-35 57830.0 36-37 91631.0 38-39 108062.0 40-41 107023.0 42-43 122758.0 44-45 147472.0 46-47 151043.0 48-49 141685.0 50-51 129970.0 52-53 127168.0 54-55 136757.0 56-57 143740.0 58-59 142507.0 60-61 140228.0 62-63 137054.0 64-65 143608.0 66-67 153805.0 68-69 156250.0 70-71 156992.0 72-73 145762.0 74-75 146655.0 76-77 152728.0 78-79 158193.0 80-81 157687.0 82-83 150108.0 84-85 147302.0 86-87 153567.0 88-89 160358.0 90-91 162823.0 92-93 162295.0 94-95 192463.0 96-97 629199.0 98-99 1441875.0 100-101 1.3903245E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.09882360938268 #Duplication Level Percentage of deduplicated Percentage of total 1 87.7313467103828 71.14909011878929 2 7.96398887558547 12.917402580963838 3 2.2499884713227027 5.474142544768334 4 0.8694575832421895 2.8204794871679395 5 0.42831414451434924 1.7367886627686426 6 0.2452450161206209 1.1933449382067869 7 0.14364247624321555 0.8154465090564436 8 0.09444396135086283 0.6127435330051983 9 0.0638327893024973 0.4659087708124306 >10 0.20574799521346285 2.4855788037566806 >50 0.0031113921235692696 0.16630864479134333 >100 8.209974271490482E-4 0.10196580397991586 >500 2.3850248291363347E-5 0.013684306303060641 >1k 3.57369227621779E-5 0.04711529563010541 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 4.890216354419017E-6 0.0 0.0 0.0 4.890216354419017E-6 3 4.890216354419017E-6 4.890216354419017E-6 0.0 0.0 4.890216354419017E-6 4 4.890216354419017E-6 2.4451081772095087E-5 0.0 0.0 1.4670649063257051E-5 5 4.890216354419017E-6 2.4451081772095087E-5 0.0 0.0 1.4670649063257051E-5 6 4.890216354419017E-6 2.4451081772095087E-5 0.0 0.0 1.9560865417676068E-5 7 4.890216354419017E-6 2.4451081772095087E-5 0.0 0.0 1.9560865417676068E-5 8 9.780432708838034E-6 2.4451081772095087E-5 0.0 0.0 1.9560865417676068E-5 9 9.780432708838034E-6 2.9341298126514102E-5 0.0 4.890216354419017E-6 2.4451081772095087E-5 10-11 1.4670649063257051E-5 2.9341298126514102E-5 0.0 1.4670649063257053E-5 2.4451081772095087E-5 12-13 1.9560865417676068E-5 2.9341298126514102E-5 0.0 2.4451081772095087E-5 2.6896189949304595E-5 14-15 1.9560865417676068E-5 6.601792078465673E-5 0.0 2.9341298126514102E-5 4.890216354419017E-5 16-17 1.9560865417676068E-5 6.846302896186624E-5 0.0 2.9341298126514102E-5 5.8682596253028205E-5 18-19 1.9560865417676068E-5 8.068856984791378E-5 0.0 2.9341298126514102E-5 7.824346167070427E-5 20-21 1.9560865417676068E-5 8.80238943795423E-5 0.0 2.9341298126514102E-5 7.824346167070427E-5 22-23 2.4451081772095087E-5 9.780432708838035E-5 0.0 3.9121730835352136E-5 9.535921891117084E-5 24-25 2.9341298126514102E-5 1.1247497615163741E-4 0.0 4.401194718977115E-5 1.1736519250605641E-4 26-27 2.9341298126514102E-5 1.2225540886047544E-4 0.0 1.149200843288469E-4 1.1736519250605641E-4 28-29 2.9341298126514102E-5 1.2225540886047544E-4 0.0 2.7874233220188396E-4 1.1736519250605641E-4 30-31 2.9341298126514102E-5 1.3692605792373248E-4 0.0 6.944107223275005E-4 1.1736519250605641E-4 32-33 3.9121730835352136E-5 1.3692605792373248E-4 0.0 0.001726246373109913 1.2225540886047544E-4 34-35 3.9121730835352136E-5 1.8093800511350365E-4 0.0 0.003168860197663523 1.2225540886047544E-4 36-37 4.8902163544190174E-5 2.249499523032748E-4 0.0 0.0054281401534051095 1.2225540886047544E-4 38-39 4.8902163544190174E-5 2.298401686576938E-4 0.0 0.008743706841701202 1.2714562521489445E-4 40-41 4.8902163544190174E-5 2.542912504297889E-4 0.0 0.012369802268502903 1.3203584156931347E-4 42-43 4.8902163544190174E-5 2.616265749614174E-4 0.0 0.016252634053911603 1.34480949746523E-4 44-45 4.8902163544190174E-5 2.9096787308793154E-4 0.0 0.020277282113598454 1.3937116610094198E-4 46-47 5.379237989860919E-5 3.129738466828171E-4 0.0 0.025108815871764445 1.4426138245536102E-4 48-49 5.379237989860919E-5 3.129738466828171E-4 0.0 0.029977026252588575 1.5159670698698953E-4 50-51 5.868259625302821E-5 3.520955775181692E-4 0.0 0.03439533672880615 1.5159670698698953E-4 52-53 6.357281260744723E-5 3.520955775181692E-4 0.0 0.038764745041479545 1.6382224787303708E-4 54-55 6.601792078465673E-5 3.569857938725882E-4 0.0 0.04331020114291202 1.784928969362941E-4 56-57 7.090813713907575E-5 3.6187601022700725E-4 0.0 0.04818330174009058 1.8827332964513216E-4 58-59 7.335324531628526E-5 3.6187601022700725E-4 0.0 0.05330091315499008 1.956086541767607E-4 60-61 7.335324531628526E-5 3.716564429358453E-4 0.0 0.05824736699748491 1.956086541767607E-4 62-63 7.335324531628526E-5 3.716564429358453E-4 0.0 0.0628490605869932 2.0783419506280825E-4 64-65 7.335324531628526E-5 4.352292555432925E-4 0.0 0.0673969617966029 2.1027930324001774E-4 66-67 8.068856984791378E-5 4.4011947189771155E-4 0.0 0.07238253736993308 2.1272441141722724E-4 68-69 8.80238943795423E-5 4.4745479642934003E-4 0.0 0.07705269398840325 2.1516951959443676E-4 70-71 8.80238943795423E-5 4.572352291381781E-4 0.0 0.08124605451231755 2.1761462777164628E-4 72-73 9.535921891117084E-5 4.596803373153876E-4 0.0 0.08472299834030947 2.542912504297889E-4 74-75 1.0269454344279936E-4 4.767960945558542E-4 0.0 0.08724145976283526 2.542912504297889E-4 76-77 1.0269454344279936E-4 5.036922845051588E-4 0.0 0.08973547010358895 2.567363586069984E-4 78-79 1.0269454344279936E-4 5.183629335684158E-4 0.0 0.0913908083395598 2.591814667842079E-4 80-81 1.0269454344279936E-4 5.183629335684158E-4 0.0 0.09200208538386218 2.6651679131583643E-4 82-83 1.0269454344279936E-4 5.208080417456253E-4 0.0 0.09250333256019012 2.9830319761956E-4 84-85 1.0269454344279936E-4 5.354786908088824E-4 0.0 0.09274050805337944 2.9830319761956E-4 86-87 1.0269454344279936E-4 5.42814015340511E-4 0.0 0.09283097705593621 2.9830319761956E-4 88 1.0269454344279936E-4 5.72155313467025E-4 0.0 0.09284075748864504 2.9830319761956E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 23345 0.0 48.35742 1 GTATCAA 43865 0.0 38.64813 1 TCAACGC 52395 0.0 31.836664 4 ATCAACG 52710 0.0 31.621817 3 CAACGCA 53535 0.0 31.150648 5 TATCAAC 56085 0.0 30.003944 2 AACGCAG 55755 0.0 29.955715 6 ACGCAGA 64205 0.0 25.97961 7 CGCAGAG 65765 0.0 25.38306 8 GCAGAGT 77515 0.0 21.501965 9 AGAGTAC 70600 0.0 18.871714 10-11 GAGTACT 45490 0.0 18.780287 12-13 GTACATG 58150 0.0 18.64097 1 TACATGG 57430 0.0 18.603851 2 CAGAGTA 76480 0.0 18.155144 10-11 ACATGGG 57230 0.0 18.125332 3 GTGGTAT 13060 0.0 18.095133 1 TGGTATC 13125 0.0 16.82051 2 GTACTTT 51815 0.0 16.392035 14-15 AGTACTT 51035 0.0 16.164164 12-13 >>END_MODULE