##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139015_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9181892 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.506916766174115 34.0 31.0 34.0 31.0 34.0 2 32.64840928209567 34.0 31.0 34.0 31.0 34.0 3 32.642743565269555 34.0 31.0 34.0 31.0 34.0 4 36.201859812770614 37.0 35.0 37.0 35.0 37.0 5 36.13728412401279 37.0 35.0 37.0 35.0 37.0 6 36.16543039277744 37.0 36.0 37.0 35.0 37.0 7 36.11482034421664 37.0 36.0 37.0 35.0 37.0 8 36.102850806783614 37.0 36.0 37.0 35.0 37.0 9 37.810669086501996 39.0 38.0 39.0 35.0 39.0 10-11 37.75372515817001 39.0 38.0 39.0 35.0 39.0 12-13 37.72517717481321 39.0 38.0 39.0 35.0 39.0 14-15 39.07438254555815 40.0 38.0 41.0 36.0 41.0 16-17 39.05091417977907 40.0 38.0 41.0 36.0 41.0 18-19 38.975532820468814 40.0 38.5 41.0 35.0 41.0 20-21 39.03436491237803 40.0 39.0 41.0 35.0 41.0 22-23 38.96457207644495 40.0 38.0 41.0 35.0 41.0 24-25 38.890759378493385 40.0 38.0 41.0 35.0 41.0 26-27 38.81358225236798 40.0 38.0 41.0 35.0 41.0 28-29 38.60221827702165 40.0 38.0 41.0 34.5 41.0 30-31 38.52997182870026 40.0 38.0 41.0 34.0 41.0 32-33 38.464352056372434 40.0 38.0 41.0 34.0 41.0 34-35 38.27826733130101 40.0 38.0 41.0 34.0 41.0 36-37 38.40192314717716 40.0 38.0 41.0 34.0 41.0 38-39 38.5211431708534 40.0 38.0 41.0 34.0 41.0 40-41 38.520294154377254 40.0 38.0 41.0 34.0 41.0 42-43 38.39509127594786 40.0 38.0 41.0 34.0 41.0 44-45 38.33549947890476 40.0 38.0 41.0 34.0 41.0 46-47 38.35703024693689 40.0 38.0 41.0 34.0 41.0 48-49 38.234002426806825 40.0 38.0 41.0 33.0 41.0 50-51 38.174658321555754 40.0 37.5 41.0 33.0 41.0 52-53 38.104813570866085 40.0 37.0 41.0 33.0 41.0 54-55 37.99649341321809 40.0 37.0 41.0 33.0 41.0 56-57 37.84644018308238 40.0 37.0 41.0 33.0 41.0 58-59 37.69186146087958 39.5 36.0 41.0 33.0 41.0 60-61 37.511734113072634 39.0 36.0 41.0 33.0 41.0 62-63 37.297705570703 39.0 35.5 40.5 32.0 41.0 64-65 37.06097381709553 38.5 35.0 40.0 32.0 41.0 66-67 36.78884189404494 38.0 35.0 40.0 32.0 41.0 68-69 36.48234995905119 37.5 35.0 40.0 31.0 41.0 70-71 36.1874116955389 37.0 35.0 39.5 31.0 41.0 72-73 35.86001270798489 36.5 34.5 39.0 31.0 41.0 74-75 35.5382977350198 36.0 34.0 39.0 31.0 40.0 76-77 34.51548523203043 35.0 33.5 37.0 29.5 39.0 78-79 34.826366800390886 35.0 34.0 37.0 30.0 39.0 80-81 34.67242762222945 35.0 34.0 37.0 30.0 39.0 82-83 34.4050763277815 35.0 34.0 36.5 30.0 38.5 84-85 34.134679679807206 35.0 34.0 36.0 30.0 37.0 86-87 33.88372316977262 35.0 34.0 36.0 30.0 37.0 88-89 33.63684533672953 35.0 33.0 35.0 30.0 36.5 90-91 33.51076726282078 35.0 33.0 35.0 30.0 36.0 92-93 33.433311485922516 35.0 33.0 35.0 30.0 36.0 94-95 33.34386059038084 35.0 33.0 35.0 30.0 36.0 96-97 33.330757955430485 35.0 33.0 35.0 30.0 35.0 98-99 33.36176341149539 34.5 33.0 35.0 30.0 35.0 100-101 32.15512349033233 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 7.0 20 57.0 21 282.0 22 1276.0 23 4348.0 24 11185.0 25 22940.0 26 39722.0 27 61964.0 28 89146.0 29 118095.0 30 153083.0 31 191354.0 32 240021.0 33 310969.0 34 428003.0 35 615976.0 36 1026507.0 37 1984364.0 38 2621852.0 39 1209556.0 40 51182.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.57679876870693 21.6307597606245 15.560877867001702 24.23156360366687 2 13.598765918832415 22.042744567241698 41.54314818775913 22.815341326166763 3 16.787922490807112 27.23139958964594 31.47401927742703 24.50665864211992 4 11.843483837072077 19.25477974217905 39.58382796718231 29.31790845356657 5 12.621850377728682 38.409918257258475 36.08303550861999 12.885195856392853 6 28.664669760662072 39.263903838335345 19.127822640941044 12.943603760061539 7 25.376984168042693 33.375704219484604 23.906252263353554 17.34105934911915 8 23.93469847046947 37.135063495463925 21.510085617943336 17.420152416123265 9 25.190952595661447 17.060911405750034 21.721252556671526 36.02688344191699 10-11 23.463640635882502 27.31764773791003 29.533227654234395 19.685483971973074 12-13 24.46372285355863 24.938864707531057 29.5191311113034 21.078281327606916 14-15 21.630735197171557 26.277159887896563 27.29730533310346 24.79479958182842 16-17 21.0162183226144 29.383928968662104 27.94651575373539 21.653336954988106 18-19 21.129975480536984 28.597899157902084 29.687810989230485 20.584314372330446 20-21 21.950928899662106 27.66519532073657 29.59687597477394 20.786999804827385 22-23 21.624950200301672 27.64175587949603 29.390331873631443 21.342962046570854 24-25 21.41881975336001 27.755107399521034 29.525919163581527 21.300153683537427 26-27 21.396094540513943 27.922730300143794 29.362826102291077 21.318349057051186 28-29 21.323534437436077 27.930823024689623 29.379600409110555 21.36604212876375 30-31 21.53726985085931 27.86799510999769 29.318185051783896 21.276549987359104 32-33 21.42996511919063 27.93841178526723 29.30782602172211 21.323797073820025 34-35 21.56229776755985 27.99938191476675 29.20312103379974 21.23519928387366 36-37 21.549279517310897 27.933764132587434 29.167688017373017 21.34926833272865 38-39 21.41804168364053 28.073999812322686 29.22527381887101 21.28268468516577 40-41 21.5875406318161 28.04802168932921 29.051414047403824 21.313023631450864 42-43 21.590073751787997 28.136109802990816 28.853491768048407 21.420324677172783 44-45 21.683225419022648 28.267830210287805 28.606819595528727 21.442124775160824 46-47 21.706259675822867 28.13048275182075 28.370672213075625 21.792585359280757 48-49 21.726931626106694 28.321242345073692 28.25162467692257 21.700201351897043 50-51 21.665108157906708 28.350909821831493 28.18899457345439 21.794987446807408 52-53 21.766450170654572 28.35401895848917 28.086881679789165 21.792649191067095 54-55 21.78167766682389 28.283215985309933 28.08290393267007 21.852202415196103 56-57 21.857139763460452 28.386064155626645 27.956319283944282 21.80047679696862 58-59 21.714571358665083 28.532926770179362 28.082428954021786 21.670072917133766 60-61 21.911367281488932 28.478555535601924 27.953386961979902 21.656690220929235 62-63 21.811756671205355 28.571877533562017 27.876861396567694 21.739504398664934 64-65 21.772874751517595 28.466234515471516 27.92856933593931 21.832321397071574 66-67 21.851035494446087 28.508030697534963 27.803504270335633 21.83742953768332 68-69 21.824736065932278 28.372826385923748 27.925301427970822 21.877136120173144 70-71 21.78795742054273 28.22085264495232 28.018485408691202 21.972704525813747 72-73 21.874050584229142 28.23674728131056 27.933487323587137 21.95571481087316 74-75 21.762184530227568 28.351691587052752 27.91683990981874 21.96928397290094 76-77 21.854045605212963 28.34914246257653 27.815381385607278 21.981430546603224 78-79 21.82354406704578 28.36061915544135 27.79406151007876 22.021775267434116 80-81 21.821570207860137 28.33899130458567 27.83789565435763 22.001542833196563 82-83 21.854835964539575 28.2905719091571 27.932741331706662 21.921850794596665 84-85 21.94792050944993 28.29325453985943 27.854735745790233 21.90408920490041 86-87 21.78788880412477 28.31833313751919 27.875166300333458 22.01861175802258 88-89 21.875147802868415 28.252388722756223 27.829836793305514 22.042626681069855 90-91 21.822696102070456 28.392308795463194 27.918869856262784 21.866125246203566 92-93 21.8963725244221 28.33014456542945 27.862176702195967 21.91130620795248 94-95 21.73290305663192 28.397402915054876 27.906154433197855 21.963539595115353 96-97 21.654233143608163 28.442691128164377 27.9991787195513 21.90389700867616 98-99 21.921751558157982 28.98917276967939 28.021673163212668 21.067402508949957 100-101 22.321388007195438 31.75592698262623 25.247529528569064 20.675155481609274 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2992.0 1 2570.0 2 3150.0 3 4332.5 4 5700.5 5 8353.5 6 10322.0 7 12068.0 8 13370.0 9 13185.0 10 11975.0 11 10902.5 12 12378.0 13 17405.0 14 28962.0 15 44593.0 16 56658.5 17 62655.0 18 63035.5 19 59427.5 20 54150.5 21 49120.5 22 47080.5 23 51059.5 24 60686.0 25 75648.5 26 95040.0 27 115911.5 28 136944.0 29 159952.0 30 181084.5 31 201098.0 32 224941.0 33 248836.0 34 270815.5 35 289357.5 36 309131.0 37 324885.0 38 331811.5 39 337254.5 40 345675.5 41 354450.0 42 358462.5 43 363323.0 44 368388.0 45 369951.0 46 370289.0 47 368513.0 48 365989.5 49 359761.0 50 346944.5 51 332049.5 52 314462.0 53 294179.5 54 274552.5 55 253682.5 56 230908.0 57 207599.0 58 183570.5 59 158962.5 60 132763.0 61 106591.0 62 82685.0 63 62256.0 64 45957.5 65 34330.0 66 26259.0 67 20098.5 68 15047.5 69 10850.5 70 7704.5 71 5395.0 72 3738.5 73 2653.5 74 1903.0 75 1295.5 76 843.5 77 526.5 78 341.0 79 236.0 80 169.5 81 116.0 82 80.5 83 51.5 84 33.5 85 26.0 86 22.0 87 18.5 88 13.0 89 8.0 90 6.5 91 5.5 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 7.079151007221606E-4 4 1.742560247931472E-4 5 4.029670573341529E-4 6 2.2871103254100574E-4 7 0.0029732434230330743 8 5.990050852264435E-4 9 3.485120495862944E-4 10-11 7.62370108470019E-5 12-13 2.7227503873929253E-5 14-15 1.633650232435755E-4 16-17 9.311806324883804E-4 18-19 2.7227503873929253E-5 20-21 0.0 22-23 0.002968150923666783 24-25 0.007473611532893832 26-27 0.03647179495451161 28-29 0.28134595459751643 30-31 0.24587503443134806 32-33 0.25275348797570696 34-35 0.13403337377795277 36-37 0.0256683620087311 38-39 0.01663226765156867 40-41 0.009570332215382529 42-43 0.006241912387237917 44-45 0.007043733260163062 46-47 0.001687137072509491 48-49 0.002165399821155298 50-51 0.00284768916139223 52-53 0.001989536563573851 54-55 2.1294016062076314E-4 56-57 0.0017718048929018513 58-59 0.003208022246460613 60-61 0.013753766649648027 62-63 0.00866780599820751 64-65 0.002435164065779591 66-67 0.0017100772480588128 68-69 0.0023072638781764672 70-71 0.004158101592928604 72-73 0.0035885181310843233 74-75 0.0037991900126892945 76-77 0.0015941724926126833 78-79 8.618452172396888E-5 80-81 3.5530489651711366E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 4.7731935172337935E-4 92-93 0.00792159757807273 94-95 0.0010797199074349512 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 159.0 20-21 662.0 22-23 1332.0 24-25 3170.0 26-27 4806.0 28-29 8102.0 30-31 17683.0 32-33 23647.0 34-35 34278.0 36-37 46531.0 38-39 56596.0 40-41 60612.0 42-43 72554.0 44-45 87080.0 46-47 86430.0 48-49 75150.0 50-51 67365.0 52-53 65358.0 54-55 70483.0 56-57 74252.0 58-59 73326.0 60-61 72432.0 62-63 71386.0 64-65 76897.0 66-67 80236.0 68-69 79413.0 70-71 78341.0 72-73 75525.0 74-75 77333.0 76-77 78408.0 78-79 82581.0 80-81 85361.0 82-83 83159.0 84-85 84608.0 86-87 88661.0 88-89 95043.0 90-91 99382.0 92-93 107344.0 94-95 121390.0 96-97 185613.0 98-99 781395.0 100-101 5747808.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.74508952266045 #Duplication Level Percentage of deduplicated Percentage of total 1 89.13972243068085 74.65014034982471 2 7.301815447800148 12.229823767079367 3 1.9502998139851024 4.899840975546313 4 0.7282179329805099 2.439387039578382 5 0.3428046040990615 1.435410112952804 6 0.18168991025026357 0.912938267956348 7 0.10228898804295702 0.5996340322587848 8 0.06617281420898594 0.44333185999183244 9 0.04335569303191895 0.32677437548475347 >10 0.14069098526651092 1.7640506309149373 >50 0.002161439850019411 0.11368998202990978 >100 6.68670799465351E-4 0.0957290762912389 >500 6.676195425209498E-5 0.035987172007043135 >1k 4.45070500618279E-5 0.05326235808357407 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.26730046487151E-5 0.0 0.0 0.0 3 0.0 3.26730046487151E-5 0.0 0.0 0.0 4 0.0 7.623701084700191E-5 0.0 1.08910015495717E-5 0.0 5 0.0 8.71280123965736E-5 0.0 1.08910015495717E-5 0.0 6 5.44550077478585E-5 8.71280123965736E-5 0.0 4.35640061982868E-5 1.08910015495717E-5 7 5.44550077478585E-5 8.71280123965736E-5 0.0 4.35640061982868E-5 2.17820030991434E-5 8 5.44550077478585E-5 9.80190139461453E-5 0.0 5.44550077478585E-5 2.17820030991434E-5 9 5.44550077478585E-5 1.742560247931472E-4 0.0 8.71280123965736E-5 3.26730046487151E-5 10-11 6.534600929743021E-5 1.742560247931472E-4 0.0 9.80190139461453E-5 3.26730046487151E-5 12-13 7.623701084700191E-5 1.742560247931472E-4 0.0 1.08910015495717E-4 3.26730046487151E-5 14-15 8.71280123965736E-5 2.0148352866707645E-4 0.0 1.5247402169400382E-4 3.811850542350095E-5 16-17 1.306920185948604E-4 2.0692902944186232E-4 0.0 1.5247402169400382E-4 6.53460092974302E-5 18-19 1.306920185948604E-4 2.2326553176621987E-4 0.0 1.742560247931472E-4 8.71280123965736E-5 20-21 1.306920185948604E-4 2.4504753486536324E-4 0.0 1.8514702634271892E-4 9.80190139461453E-5 22-23 1.3613751936964624E-4 3.049480433880076E-4 0.0 1.9059252711750476E-4 1.0346451472093116E-4 24-25 1.415830201444321E-4 3.9207605578458126E-4 0.0 2.3415653331579155E-4 1.1980101704528871E-4 26-27 1.415830201444321E-4 4.1385805888372463E-4 0.0 2.831660402888642E-4 1.415830201444321E-4 28-29 1.415830201444321E-4 4.247490604332963E-4 0.0 4.1930355965851045E-4 1.415830201444321E-4 30-31 1.415830201444321E-4 4.955405705055123E-4 0.0 9.747446386866672E-4 1.415830201444321E-4 32-33 1.415830201444321E-4 5.009860712802982E-4 0.0 0.0021999823130134837 1.5247402169400382E-4 34-35 1.5247402169400382E-4 5.826685829020859E-4 0.0 0.003986106567143243 1.5247402169400382E-4 36-37 1.5247402169400382E-4 6.589055937490879E-4 0.0 0.006289553394877656 1.5247402169400382E-4 38-39 1.5247402169400382E-4 6.643510945238737E-4 0.0 0.01034100597131833 1.633650232435755E-4 40-41 1.5247402169400382E-4 7.514791069204473E-4 0.0 0.014860771614390585 1.633650232435755E-4 42-43 1.5247402169400382E-4 7.732611100195908E-4 0.0 0.019048361710200905 1.633650232435755E-4 44-45 1.5791952246878966E-4 8.658346231909502E-4 0.0 0.023954757908282956 1.633650232435755E-4 46-47 1.633650232435755E-4 9.366261332631662E-4 0.0 0.02979233473885339 1.633650232435755E-4 48-49 1.633650232435755E-4 9.420716340379521E-4 0.0 0.035422982539981954 1.960380278922906E-4 50-51 1.6881052401836134E-4 0.0010400906479840974 0.0 0.04124966836900282 1.960380278922906E-4 52-53 1.742560247931472E-4 0.0010455361487588832 0.0 0.04662982313449124 2.0692902944186232E-4 54-55 1.742560247931472E-4 0.0010618726510832409 0.0 0.0522223524301963 2.17820030991434E-4 56-57 1.742560247931472E-4 0.00108910015495717 0.0 0.057891118736748376 2.287110325410057E-4 58-59 1.742560247931472E-4 0.00108910015495717 0.0 0.06383760558281452 2.3960203409057742E-4 60-61 1.960380278922906E-4 0.0010999911565067418 0.0 0.06945736238239353 2.613840371897208E-4 62-63 2.504930356401491E-4 0.0011108821580563134 0.0 0.07482662614633237 2.6682953796450666E-4 64-65 2.504930356401491E-4 0.0012415741766511738 0.0 0.08031024542654172 2.722750387392925E-4 66-67 2.613840371897208E-4 0.0012415741766511738 0.0 0.08612059475323822 2.722750387392925E-4 68-69 2.613840371897208E-4 0.0012579106789755313 0.0 0.09175124255436679 2.831660402888642E-4 70-71 2.7772053951407834E-4 0.001274247181299889 0.0 0.09734377185007186 2.940570418384359E-4 72-73 2.831660402888642E-4 0.0012796926820746748 0.0 0.10201056601406333 3.158390449375793E-4 74-75 2.831660402888642E-4 0.0013014746851738182 0.0 0.10571350654091771 3.26730046487151E-4 76-77 2.831660402888642E-4 0.0013613751936964627 0.0 0.10916050853135716 3.3217554726193687E-4 78-79 2.831660402888642E-4 0.0013940481983451777 0.0 0.11250404600707567 3.4306654881150855E-4 80-81 2.831660402888642E-4 0.0013940481983451777 0.0 0.11362037366590677 3.539575503610803E-4 82-83 2.831660402888642E-4 0.0013940481983451777 0.0 0.11420848774958364 3.811850542350095E-4 84-85 2.831660402888642E-4 0.0013994936991199637 0.0 0.11458967280381865 3.811850542350095E-4 86-87 2.9405704183843595E-4 0.0014376122045434644 0.0 0.1147203648224135 3.866305550097954E-4 88-89 3.485120495862944E-4 0.0015138492153904664 0.0 0.11474759232628744 4.029670573341529E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11925 0.0 49.984123 1 GTATCAA 22080 0.0 35.3941 1 TCAACGC 27090 0.0 28.359396 4 ATCAACG 27095 0.0 28.307005 3 CAACGCA 27605 0.0 27.845798 5 TATCAAC 28390 0.0 27.331854 2 AACGCAG 28615 0.0 26.95225 6 ACGCAGA 33215 0.0 23.15514 7 CGCAGAG 33215 0.0 23.141521 8 GCAGAGT 38360 0.0 19.926195 9 GTACATG 26635 0.0 19.908354 1 TACATGG 26055 0.0 19.695662 2 ACATGGG 26405 0.0 19.25659 3 GAGTACT 23190 0.0 19.09745 12-13 AGAGTAC 35360 0.0 18.64451 10-11 CAGAGTA 37760 0.0 17.838541 10-11 GTGGTAT 6235 0.0 17.680704 1 AGTACTT 25380 0.0 17.31488 12-13 TGGTATC 6025 0.0 16.665926 2 CATGGGG 19265 0.0 16.612272 4 >>END_MODULE