##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139013_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10993726 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6292307994578 34.0 31.0 34.0 31.0 34.0 2 32.75831615232179 34.0 31.0 34.0 31.0 34.0 3 33.41243014424773 34.0 31.0 34.0 31.0 37.0 4 36.18996625893714 37.0 35.0 37.0 35.0 37.0 5 36.149288785258065 37.0 35.0 37.0 35.0 37.0 6 36.17742465111464 37.0 36.0 37.0 35.0 37.0 7 36.18658351135912 37.0 36.0 37.0 35.0 37.0 8 36.46700208828199 37.0 37.0 37.0 35.0 39.0 9 37.809550101576114 39.0 38.0 39.0 35.0 39.0 10-11 37.77373708422422 39.0 38.0 39.0 35.0 39.0 12-13 37.91813885483411 39.0 38.0 39.0 35.0 40.0 14-15 39.08074610009382 40.0 38.0 41.0 36.0 41.0 16-17 39.03986346394298 40.0 38.0 41.0 36.0 41.0 18-19 38.998138119869466 40.0 38.5 41.0 35.0 41.0 20-21 39.042943102150446 40.0 39.0 41.0 35.0 41.0 22-23 38.979828991990644 40.0 38.0 41.0 35.0 41.0 24-25 38.899828725892135 40.0 38.0 41.0 35.0 41.0 26-27 38.82093983935745 40.0 38.0 41.0 35.0 41.0 28-29 38.60038700418805 40.0 38.0 41.0 34.5 41.0 30-31 38.54303168023211 40.0 38.0 41.0 34.0 41.0 32-33 38.45562878353998 40.0 38.0 41.0 34.0 41.0 34-35 38.296834593445226 40.0 38.0 41.0 34.0 41.0 36-37 38.43314596699102 40.0 38.0 41.0 34.0 41.0 38-39 38.530933488850366 40.0 38.0 41.0 34.0 41.0 40-41 38.51629925995364 40.0 38.0 41.0 34.0 41.0 42-43 38.40653819592414 40.0 38.0 41.0 34.0 41.0 44-45 38.35896075273719 40.0 38.0 41.0 34.0 41.0 46-47 38.3580777660449 40.0 38.0 41.0 34.0 41.0 48-49 38.256540040190416 40.0 38.0 41.0 33.0 41.0 50-51 38.187016592155594 40.0 38.0 41.0 33.0 41.0 52-53 38.12344627981631 40.0 37.0 41.0 33.0 41.0 54-55 38.021268774810494 40.0 37.0 41.0 33.0 41.0 56-57 37.8702207591008 40.0 37.0 41.0 33.0 41.0 58-59 37.72143645802574 39.5 36.0 41.0 33.0 41.0 60-61 37.54300382675443 39.0 36.0 41.0 33.0 41.0 62-63 37.33717846886389 39.0 35.5 41.0 32.0 41.0 64-65 37.1025454443261 39.0 35.0 40.0 32.0 41.0 66-67 36.83226802416233 38.0 35.0 40.0 32.0 41.0 68-69 36.53236231660118 37.5 35.0 40.0 31.0 41.0 70-71 36.233676380955984 37.0 35.0 39.5 31.0 41.0 72-73 35.904523050276836 36.5 35.0 39.0 31.0 41.0 74-75 35.4781919413325 36.0 34.0 39.0 30.5 40.0 76-77 34.6579470788657 35.0 33.5 37.0 29.5 39.0 78-79 34.884189789203475 35.0 34.0 37.0 30.0 39.0 80-81 34.70383300153986 35.0 34.0 37.0 30.5 39.0 82-83 34.43070592162756 35.0 34.0 36.5 30.0 38.5 84-85 34.15645949740053 35.0 34.0 36.0 30.0 37.0 86-87 33.89827291725865 35.0 34.0 36.0 30.0 37.0 88-89 33.66561051506717 35.0 33.5 35.0 30.0 36.5 90-91 33.542937006730426 35.0 33.0 35.0 30.0 36.0 92-93 33.462191138330226 35.0 33.0 35.0 30.0 36.0 94-95 33.38028638924679 35.0 33.0 35.0 30.0 36.0 96-97 33.370366833249705 35.0 33.0 35.0 30.0 35.0 98-99 33.36774876501343 34.5 33.0 35.0 30.0 35.0 100-101 31.96588646778207 33.0 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 1.0 18 3.0 19 15.0 20 63.0 21 331.0 22 1420.0 23 4783.0 24 12096.0 25 25121.0 26 45040.0 27 71053.0 28 101661.0 29 137718.0 30 178407.0 31 224646.0 32 284568.0 33 370139.0 34 509079.0 35 723455.0 36 1175574.0 37 2260075.0 38 3137633.0 39 1626254.0 40 104590.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.65562521148438 0.020893746611701954 27.15027306498619 30.17320797691773 2 14.021595629353742 25.569093806947357 38.21368335664061 22.195627207058294 3 15.26333096075698 25.701232754288263 34.300031609084314 24.73540467587044 4 12.373264857720722 24.878177901060564 38.04331482727145 24.705242413947268 5 16.648697256415343 37.23852143089809 32.730196058954945 13.382585253731621 6 26.58210634483485 38.566732744199356 21.076492240839737 13.774668670126058 7 25.073566184824454 33.593353601063605 23.371178719938378 17.961901494173556 8 23.541334657730623 32.641162922697404 22.895590921329344 20.921911498242626 9 23.34042619573917 20.961495972095243 24.515674049483515 31.182403782682073 10-11 23.925711385876134 26.71005175046802 29.419390184411697 19.944846679244154 12-13 24.308878159531076 24.920450038749394 29.233971758422083 21.536700043297447 14-15 21.793975069456803 27.340563623532326 27.320274737262107 23.545186569748765 16-17 20.758959575586918 29.584384737742198 28.326533485894423 21.33012220077647 18-19 20.93035842280866 28.637913281400657 30.031304235508998 20.40042406028169 20-21 21.752305242286834 27.892242311303246 29.86007493828294 20.495377508126985 22-23 21.498393516241194 27.76255208438049 29.673047326428385 21.066007072949926 24-25 21.232084483276243 28.02543165460097 29.818701017937787 20.923782844185 26-27 21.175945321190362 28.17311701108754 29.66595896283423 20.984978704887865 28-29 21.148118355544927 28.05677133126877 29.650645831304672 21.144464481881627 30-31 21.43862647756407 28.01536470014783 29.620935169854423 20.925073652433674 32-33 21.172246084378713 28.29589734084088 29.4998957692204 21.03196080556 34-35 21.380186136983625 28.16941571023183 29.517080758819887 20.93331739396466 36-37 21.32239326511907 28.242215592995745 29.477208759949143 20.95818238193604 38-39 21.16649317391492 28.36735044313746 29.483554697090007 20.98260168585761 40-41 21.43258291335052 28.09538836037192 29.31169124552192 21.16033748075564 42-43 21.379896404850093 28.13707667418693 29.20272384140487 21.280303079558102 44-45 21.465344207716385 28.487523210667465 28.84251856496584 21.204614016650307 46-47 21.57209382110136 28.29581659474644 28.59575103459632 21.53633854955588 48-49 21.42736617175162 28.514660315466717 28.60600912924226 21.4519643835394 50-51 21.483496520050853 28.66823169667665 28.34620120518892 21.502070578083572 52-53 21.654577026450976 28.420567699980293 28.36703893243846 21.557816341130277 54-55 21.575788023630206 28.43782565372249 28.40991399382637 21.57647232882093 56-57 21.595122383468926 28.717560925447177 28.168756946227468 21.51855974485643 58-59 21.594845610237474 28.568867383968932 28.325347934042146 21.510939071751448 60-61 21.641795959155694 28.6511353106014 28.239092994488335 21.46797573575457 62-63 21.58965410174857 28.79845684605703 28.156293487712464 21.45559556448194 64-65 21.641473636146543 28.571216387497344 28.140021150914134 21.64728882544198 66-67 21.628644472398744 28.639585172676153 28.0991885082159 21.632581846709208 68-69 21.680871422293862 28.619244508349993 28.135989935466043 21.5638941338901 70-71 21.658031746279917 28.29980339351394 28.23983776381945 21.80232709638669 72-73 21.638120850436273 28.432929633368527 28.208439199972375 21.720510316222825 74-75 21.541505311869326 28.56801330257529 28.19019462511555 21.70028676043983 76-77 21.73129460073915 28.318899353553096 28.083827751131672 21.86597829457608 78-79 21.54601294796731 28.43135460188605 28.175274198870394 21.84735825127625 80-81 21.630028036545333 28.48400267876745 28.11153516164413 21.774434123043083 82-83 21.72331656450241 28.309138766912046 28.212784723428026 21.754759945157517 84-85 21.779789606805686 28.356073255161203 28.171314652290754 21.69282248574236 86-87 21.63672932271386 28.3748776417523 28.179655446840577 21.80873758869326 88-89 21.727712248279072 28.226389252210232 28.206768380439527 21.839130119071164 90-91 21.78721003862243 28.264533401797937 28.216684297124857 21.731572262454776 92-93 21.71473010204152 28.240633871739707 28.288941449608927 21.755694576609844 94-95 21.693113205075026 28.12857958216877 28.306605573426612 21.871701639329594 96-97 21.60293367644635 28.30328708189557 28.40363338746285 21.69014585419523 98-99 21.963033961060656 29.196916700729542 28.323720007526447 20.516329330683355 100-101 22.279386488950873 31.36025991232704 25.298662596065768 21.061691002656318 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2628.0 1 2289.0 2 3122.5 3 4504.5 4 6066.0 5 9165.5 6 11501.0 7 13688.5 8 15728.5 9 16076.5 10 14921.5 11 13734.0 12 15242.5 13 20153.5 14 32887.0 15 52350.5 16 69217.5 17 78478.5 18 79444.5 19 74869.5 20 68242.5 21 62000.0 22 59296.0 23 62922.5 24 72650.5 25 88940.5 26 110726.5 27 135640.0 28 164362.5 29 194982.0 30 225691.0 31 255848.5 32 286656.5 33 317429.5 34 346085.5 35 370096.5 36 393592.5 37 415326.5 38 428811.0 39 438033.5 40 444694.0 41 449483.0 42 451610.5 43 452970.0 44 454977.5 45 454922.5 46 451906.5 47 446369.5 48 436479.5 49 422854.5 50 409755.0 51 392248.0 52 367805.0 53 342582.0 54 318345.0 55 293605.0 56 267847.0 57 240179.0 58 210373.0 59 179852.5 60 149028.0 61 119794.0 62 93987.5 63 72231.0 64 54330.0 65 40769.0 66 30955.0 67 23509.5 68 17723.5 69 12437.5 70 8561.5 71 6057.5 72 4183.5 73 2866.5 74 1916.5 75 1306.5 76 870.5 77 568.0 78 379.0 79 264.0 80 183.5 81 120.5 82 85.0 83 64.0 84 50.0 85 40.0 86 31.0 87 21.5 88 12.0 89 6.0 90 5.0 91 5.5 92 5.0 93 4.0 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 5.457658304381972E-5 2 1.8192194347939908E-4 3 4.6390095587246766E-4 4 2.819790123930685E-4 5 3.9113217848070795E-4 6 6.822072880477465E-4 7 0.0020375257669692694 8 4.1842047000261785E-4 9 4.0932437282864786E-4 10-11 8.186487456572957E-5 12-13 5.457658304381972E-5 14-15 2.0466218641432393E-4 16-17 8.823214258750855E-4 18-19 5.457658304381972E-5 20-21 2.228622563438992E-4 22-23 0.003102154587367954 24-25 0.010937423650731849 26-27 0.07356307692475751 28-29 0.2750449351804727 30-31 0.24906705899996606 32-33 0.2478011120484689 34-35 0.10778214720442865 36-37 0.02217089737087458 38-39 0.013224849352724829 40-41 0.00660891422877266 42-43 0.004061022755860923 44-45 0.005318605395063916 46-47 9.283873728542226E-4 48-49 0.001599344317442138 50-51 0.0020266659181579303 52-53 9.009662367853128E-4 54-55 1.0988830403336529E-4 56-57 0.0011095180561203311 58-59 0.0026229655146245605 60-61 0.010597043610023857 62-63 0.006203238672465361 64-65 0.0012543436898561225 66-67 0.001846605064346227 68-69 0.0026889990633051563 70-71 0.004299360567828275 72-73 0.003924983734647824 74-75 0.0036641811304665 76-77 0.001319915354670804 78-79 9.664689290188266E-5 80-81 3.0516344611752064E-4 82-83 2.3330271429627125E-5 84-85 0.0 86-87 1.1978290067949247E-5 88-89 5.4688061122293806E-5 90-91 0.0013886107381576962 92-93 0.007486894326408887 94-95 8.308747961161076E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 223.0 20-21 802.0 22-23 1712.0 24-25 4410.0 26-27 6665.0 28-29 12218.0 30-31 24652.0 32-33 33235.0 34-35 48952.0 36-37 66294.0 38-39 77024.0 40-41 81800.0 42-43 97615.0 44-45 114965.0 46-47 112331.0 48-49 99100.0 50-51 89539.0 52-53 88927.0 54-55 94423.0 56-57 97418.0 58-59 97278.0 60-61 96110.0 62-63 96065.0 64-65 102045.0 66-67 107915.0 68-69 105334.0 70-71 103037.0 72-73 101741.0 74-75 103824.0 76-77 105600.0 78-79 110395.0 80-81 111860.0 82-83 109971.0 84-85 112958.0 86-87 118139.0 88-89 124887.0 90-91 133098.0 92-93 140014.0 94-95 159343.0 96-97 278850.0 98-99 1075407.0 100-101 6347550.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.51512412297188 #Duplication Level Percentage of deduplicated Percentage of total 1 88.71222766580944 74.08812704735416 2 7.587888603773693 12.674069171508876 3 2.039125356151546 5.108934216638867 4 0.7941356374215289 2.652893453189375 5 0.3436387128169434 1.4349514877182659 6 0.19154762783184642 0.9598274348302486 7 0.10228627356147382 0.5979715582793919 8 0.05959845219171637 0.3981897705862558 9 0.043264804516758466 0.32519389674358784 >10 0.12337886790896738 1.5471213565531134 >50 0.0025032805409145264 0.1386576912740621 >100 3.6820434372525444E-4 0.05270235748555668 >500 3.651313141675631E-5 0.021360557838259117 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.096097173969953E-6 2 0.0 3.6384388695879813E-5 0.0 9.096097173969953E-6 9.096097173969953E-6 3 0.0 4.548048586984977E-5 0.0 3.6384388695879813E-5 9.096097173969953E-6 4 0.0 4.548048586984977E-5 0.0 3.6384388695879813E-5 1.8192194347939907E-5 5 0.0 4.548048586984977E-5 0.0 3.6384388695879813E-5 1.8192194347939907E-5 6 0.0 4.548048586984977E-5 0.0 3.6384388695879813E-5 1.8192194347939907E-5 7 0.0 5.457658304381972E-5 0.0 3.6384388695879813E-5 2.728829152190986E-5 8 0.0 8.186487456572958E-5 0.0 5.457658304381972E-5 4.548048586984977E-5 9 0.0 1.182492632616094E-4 0.0 5.457658304381972E-5 6.367268021778967E-5 10-11 9.096097173969953E-6 1.2279731184859438E-4 0.0 6.367268021778967E-5 6.367268021778967E-5 12-13 9.096097173969953E-6 1.364414576095493E-4 0.0 8.186487456572958E-5 6.367268021778967E-5 14-15 9.096097173969953E-6 2.2285438076226387E-4 0.0 1.0915316608763944E-4 1.000570689136695E-4 16-17 9.096097173969953E-6 2.728829152190986E-4 0.0 1.364414576095493E-4 1.1824926326160938E-4 18-19 9.096097173969953E-6 2.728829152190986E-4 0.0 1.5008560337050422E-4 1.2734536043557934E-4 20-21 9.096097173969953E-6 2.728829152190986E-4 0.0 1.7282584630542912E-4 1.2734536043557934E-4 22-23 9.096097173969953E-6 3.0017120674100844E-4 0.0 1.91018040653369E-4 1.4553755478351925E-4 24-25 9.096097173969953E-6 3.4110364402387323E-4 0.0 2.1830633217527888E-4 1.7282584630542912E-4 26-27 9.096097173969953E-6 3.6384388695879816E-4 0.0 2.8652706098005354E-4 1.7282584630542912E-4 28-29 1.8192194347939907E-5 3.82036081306738E-4 0.0 7.140436281566414E-4 1.7282584630542912E-4 30-31 1.8192194347939907E-5 4.093243728286479E-4 0.0 0.0020102374754473597 1.7737389489241412E-4 32-33 1.8192194347939907E-5 4.1842047000261785E-4 0.0 0.004375222740679548 2.1830633217527888E-4 34-35 1.8192194347939907E-5 4.911892473943775E-4 0.0 0.007376934808089632 2.546907208711587E-4 36-37 1.8192194347939907E-5 5.594099761991522E-4 0.0 0.012193318261706722 2.546907208711587E-4 38-39 1.8192194347939907E-5 6.048904620690018E-4 0.0 0.01889714187892258 2.819790123930686E-4 40-41 1.8192194347939907E-5 6.458228993518667E-4 0.0 0.026369585707338897 3.0017120674100844E-4 42-43 1.8192194347939907E-5 7.185916767436264E-4 0.0 0.03347363760020943 3.0926730391497837E-4 44-45 1.8192194347939907E-5 7.731682597874461E-4 0.0 0.04191936382624053 3.2291144967593337E-4 46-47 1.8192194347939907E-5 7.731682597874461E-4 0.0 0.05066526125901264 3.4110364402387323E-4 48-49 1.8192194347939907E-5 7.82264356961416E-4 0.0 0.0595157638092854 3.6384388695879816E-4 50-51 1.8192194347939907E-5 8.914175230490555E-4 0.0 0.06842084294260199 3.6384388695879816E-4 52-53 1.8192194347939907E-5 9.096097173969953E-4 0.0 0.07680289648841529 4.0477632424166295E-4 54-55 1.8192194347939907E-5 9.232538631579502E-4 0.0 0.08570797562173188 4.457087615245277E-4 56-57 1.8192194347939907E-5 9.323499603319202E-4 0.0 0.09298940140949483 4.502568101115127E-4 58-59 1.8192194347939907E-5 9.459941060928752E-4 0.0 0.09894734505844516 4.548048586984977E-4 60-61 1.8192194347939907E-5 9.687343490278E-4 0.0 0.10454599286902366 4.548048586984977E-4 62-63 1.8192194347939907E-5 9.9602264054971E-4 0.0 0.11011280433949328 4.820931502204075E-4 64-65 1.8192194347939907E-5 0.0010642433693544846 0.0 0.11596159482235596 4.820931502204075E-4 66-67 1.8192194347939907E-5 0.0011188199523983042 0.0 0.12187405798543642 4.957372959813625E-4 68-69 1.8192194347939907E-5 0.0011370121467462442 0.0 0.12804121186938805 5.093814417423174E-4 70-71 1.8192194347939907E-5 0.0011506562925071991 0.0 0.13387181015790278 5.503138790251822E-4 72-73 1.8192194347939907E-5 0.001164300438268154 0.0 0.13854720410532334 6.640150936998066E-4 74-75 1.8192194347939907E-5 0.0012234250698989588 0.0 0.14235846882121675 6.640150936998066E-4 76-77 1.8192194347939907E-5 0.0012961938472907182 0.0 0.14566944819254182 6.685631422867916E-4 78-79 1.8192194347939907E-5 0.0013189340902256433 0.0 0.14859384343397317 6.731111908737765E-4 80-81 1.8192194347939907E-5 0.0013189340902256433 0.0 0.14981272045528513 7.185916767436263E-4 82-83 1.8192194347939907E-5 0.0013325782359865982 0.0 0.15039032262583224 7.73168259787446E-4 84-85 1.8192194347939907E-5 0.001355318478921523 0.0 0.15066320554105134 7.82264356961416E-4 86-87 1.8192194347939907E-5 0.001373510673269463 0.0 0.15076326260996498 8.00456551309356E-4 88-89 1.8192194347939907E-5 0.0014280872563132826 0.0 0.15083148333876978 8.186487456572958E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15775 0.0 48.86409 1 GTATCAA 27965 0.0 35.719025 1 ATCAACG 33620 0.0 28.985214 3 TCAACGC 35390 0.0 27.60688 4 CAACGCA 36125 0.0 27.021893 5 AACGCAG 36270 0.0 26.98347 6 TATCAAC 36675 0.0 26.903355 2 ACGCAGA 36630 0.0 26.672209 7 CGCAGAG 43160 0.0 22.63605 8 GCAGAGT 49300 0.0 19.689037 9 GTACATG 35275 0.0 19.573805 1 TACATGG 34675 0.0 19.245111 2 ACATGGG 34030 0.0 19.090662 3 GAGTACT 29065 0.0 18.905956 12-13 AGAGTAC 45750 0.0 18.618793 10-11 CAGAGTA 49205 0.0 17.627832 10-11 GTGGTAT 7715 0.0 17.561178 1 AGTACTT 31790 0.0 17.186094 12-13 GTACTTT 32470 0.0 16.9369 14-15 TGGTATC 7585 0.0 16.3644 2 >>END_MODULE