##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139012_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9445648 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51854557781531 34.0 31.0 34.0 31.0 34.0 2 32.66431662496845 34.0 31.0 34.0 31.0 34.0 3 32.65544799043962 34.0 31.0 34.0 31.0 34.0 4 36.20778532081653 37.0 35.0 37.0 35.0 37.0 5 36.14826616448125 37.0 35.0 37.0 35.0 37.0 6 36.174506079413504 37.0 36.0 37.0 35.0 37.0 7 36.126418431006535 37.0 36.0 37.0 35.0 37.0 8 36.115165523847594 37.0 36.0 37.0 35.0 37.0 9 37.828615358099306 39.0 38.0 39.0 35.0 39.0 10-11 37.77155161826907 39.0 38.0 39.0 35.0 39.0 12-13 37.74115597998147 39.0 38.0 39.0 35.0 39.0 14-15 39.09269231713907 40.0 38.0 41.0 36.0 41.0 16-17 39.069540808634834 40.0 38.0 41.0 36.0 41.0 18-19 38.995251040479175 40.0 38.5 41.0 35.0 41.0 20-21 39.05793782669902 40.0 39.0 41.0 35.5 41.0 22-23 38.99016331776642 40.0 38.5 41.0 35.0 41.0 24-25 38.91924127502942 40.0 38.0 41.0 35.0 41.0 26-27 38.84213303437526 40.0 38.0 41.0 35.0 41.0 28-29 38.62664298826009 40.0 38.0 41.0 34.5 41.0 30-31 38.553193516726864 40.0 38.0 41.0 34.0 41.0 32-33 38.48716398856179 40.0 38.0 41.0 34.0 41.0 34-35 38.299466682278705 40.0 38.0 41.0 34.0 41.0 36-37 38.4171792322101 40.0 38.0 41.0 34.0 41.0 38-39 38.536833150045595 40.0 38.0 41.0 34.0 41.0 40-41 38.53208135946902 40.0 38.0 41.0 34.0 41.0 42-43 38.40405523175529 40.0 38.0 41.0 34.0 41.0 44-45 38.34383649896306 40.0 38.0 41.0 34.0 41.0 46-47 38.35964448032293 40.0 38.0 41.0 34.0 41.0 48-49 38.23407775291834 40.0 38.0 41.0 33.0 41.0 50-51 38.17453497917923 40.0 37.5 41.0 33.0 41.0 52-53 38.10026291614276 40.0 37.0 41.0 33.0 41.0 54-55 37.994564425339526 40.0 37.0 41.0 33.0 41.0 56-57 37.84297646671895 40.0 37.0 41.0 33.0 41.0 58-59 37.684903256905784 39.5 36.0 41.0 33.0 41.0 60-61 37.50469642194062 39.0 36.0 41.0 33.0 41.0 62-63 37.285938675829165 39.0 35.5 40.5 32.0 41.0 64-65 37.04390971487584 38.5 35.0 40.0 32.0 41.0 66-67 36.76788693194344 38.0 35.0 40.0 32.0 41.0 68-69 36.45621071239363 37.5 35.0 40.0 31.0 41.0 70-71 36.16095347659183 37.0 35.0 39.5 31.0 41.0 72-73 35.83414220955404 36.5 34.5 39.0 31.0 41.0 74-75 35.506470444550345 36.0 34.0 39.0 31.0 40.0 76-77 34.49533618896713 35.0 33.5 37.0 29.5 39.0 78-79 34.798133620728635 35.0 34.0 37.0 30.0 39.0 80-81 34.64261398308759 35.0 34.0 37.0 30.0 39.0 82-83 34.37982287258643 35.0 34.0 36.0 30.0 38.5 84-85 34.11283447736531 35.0 34.0 36.0 30.0 37.0 86-87 33.866866867434226 35.0 34.0 35.5 30.0 37.0 88-89 33.627783834592705 35.0 33.5 35.0 30.0 36.5 90-91 33.503907670454396 35.0 33.0 35.0 30.0 36.0 92-93 33.42854359660414 35.0 33.0 35.0 30.0 36.0 94-95 33.34288556001174 35.0 33.0 35.0 30.0 36.0 96-97 33.33333585879814 35.0 33.0 35.0 30.0 35.0 98-99 33.36695978820556 34.5 33.0 35.0 30.0 35.0 100-101 32.15374586549361 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 16.0 20 32.0 21 257.0 22 1179.0 23 4230.0 24 11229.0 25 22680.0 26 40273.0 27 63367.0 28 90722.0 29 121458.0 30 155953.0 31 196125.0 32 247050.0 33 320848.0 34 442248.0 35 635872.0 36 1056782.0 37 2038240.0 38 2693285.0 39 1248885.0 40 54915.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.998859580623794 21.369058004278795 15.455244574009111 24.176837841088297 2 13.733996862893896 21.91741635936465 41.48655550153891 22.862031276202543 3 16.986330868302655 26.942618401033542 31.299953872648917 24.77109685801489 4 11.943716182767309 19.03339830872018 39.22488795874663 29.79799754976588 5 12.779058207992918 38.22902914687352 35.827447883196534 13.164464761937028 6 29.026310270350503 38.887370843671896 19.002497134388218 13.083821751589387 7 25.71274724060104 33.227436473000374 23.60841107702263 17.451405209375952 8 24.121555574776757 37.08573388065054 21.26515350180915 17.527557042763558 9 25.2969631625931 16.996382237008152 21.598623107270082 36.108031493128664 10-11 23.745011784012647 27.189274116148766 29.205083214879167 19.86063088495942 12-13 24.72662269225659 24.80578615859478 29.34837695043589 21.11921419871274 14-15 21.853912710036866 26.12192713172706 27.12325753481754 24.900902623418535 16-17 21.198276480860105 29.22784974693925 27.766173263665312 21.807700508535337 18-19 21.283038767279656 28.3161839857221 29.661364611801034 20.739412635197212 20-21 22.09645078973388 27.39655093375112 29.619760821064485 20.88723745545052 22-23 21.78859083871011 27.393112205151382 29.442543288740953 21.37575366739756 24-25 21.551088090496272 27.577452970183387 29.475426915193424 21.396032024126914 26-27 21.51421311861973 27.692560004027207 29.42289624913561 21.370330628217456 28-29 21.476821653858607 27.662607291016243 29.369935746040493 21.490635309084656 30-31 21.7336196818812 27.628622542990843 29.326256816478036 21.31150095864992 32-33 21.497163656747166 27.773733469500694 29.269086915540075 21.460015958212065 34-35 21.6898519760833 27.79651393862873 29.26398726811932 21.249646817168646 36-37 21.678092461652813 27.747642191439276 29.179131332560786 21.39513401434713 38-39 21.528302835673394 27.851716339402067 29.229212795631454 21.39076802929309 40-41 21.71888913266857 27.740217103113874 29.069659257600744 21.471234506616813 42-43 21.679591694520237 27.87773885708495 28.798138573346062 21.64453087504875 44-45 21.78106162989847 27.986481927232 28.602004194713487 21.63045224815604 46-47 21.79489225312139 28.016951799706728 28.322322610734176 21.865833336437714 48-49 21.84831020382589 28.12208207282248 28.19240287209795 21.837204851253684 50-51 21.863602092013576 28.231180026903917 28.030765425213637 21.874452455868862 52-53 21.957423863401335 28.15841955291678 27.98349588013374 21.900660703548148 54-55 21.94111146853463 28.120351892624633 27.98913151318809 21.949405125652643 56-57 21.918328694051826 28.201304334663003 27.94865227683223 21.931714694452943 58-59 21.86320125397359 28.252151749618548 27.99234057226205 21.892306424145815 60-61 21.971911405202334 28.251672043454683 27.938826968785907 21.837589582557072 62-63 21.961131376291043 28.31266138133523 27.882015476177223 21.844191766196506 64-65 21.925580385288796 28.274724771837818 27.85256632387037 21.947128519003016 66-67 21.99763120790813 28.24560835477603 27.747560540682194 22.009199896633643 68-69 21.92962255731363 28.200965995162306 27.841801541412835 22.027609906111227 70-71 21.918890867661446 28.04251131111688 27.89068166425291 22.147916156968765 72-73 21.997981641020726 28.045058642347026 27.891372362231877 22.065587354400375 74-75 21.883906123789803 28.163128183542753 27.82114944246892 22.131816250198526 76-77 21.964973564099676 28.090856179799072 27.801535145761296 22.142635110339956 78-79 21.93476556572595 28.050137631018917 27.84018763869624 22.174909164558894 80-81 21.944831564519124 28.059503977484912 27.823565737508943 22.17209872048702 82-83 21.97015117535172 28.05491917795624 27.89282262365568 22.08210702303636 84-85 22.08178591460504 28.040281618754015 27.81439596188269 22.063536504758257 86-87 21.953539351622833 28.040379305605878 27.891590694903996 22.114490647867292 88-89 22.00426928761129 27.948687549457237 27.84243081904907 22.204612343882406 90-91 22.048393787990836 27.953298933169425 27.900616455747134 22.097690823092602 92-93 22.047139491938104 27.895471505858538 27.949799996069586 22.107589006133775 94-95 21.898406240141302 27.92809499921739 28.01388133289093 22.159617427750376 96-97 21.907943918104568 27.970593875332376 28.01618006962826 22.105282136934797 98-99 22.122764673598255 28.54674523351388 28.067950975672705 21.26253911721516 100-101 22.550544589450347 31.283694005860568 25.266706758651917 20.899054646037165 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2365.0 1 2131.0 2 2844.5 3 3967.0 4 5272.5 5 7899.0 6 9968.0 7 12087.0 8 14024.5 9 14305.0 10 13165.5 11 12031.0 12 13336.0 13 18424.0 14 30737.0 15 47393.5 16 60426.5 17 66621.5 18 66538.5 19 62201.0 20 55887.5 21 49970.5 22 47082.0 23 49436.5 24 56799.0 25 69990.0 26 87142.0 27 105895.0 28 127351.0 29 151292.0 30 174662.0 31 196890.5 32 219631.0 33 242463.5 34 263928.5 35 282867.0 36 302263.0 37 321911.5 38 337253.0 39 348140.0 40 358092.5 41 368452.5 42 375192.0 43 379310.0 44 384051.0 45 388439.0 46 390023.0 47 388816.0 48 385026.5 49 375411.5 50 364250.5 51 350358.5 52 331267.0 53 311923.5 54 291557.5 55 268449.0 56 245317.0 57 220798.0 58 194136.5 59 166434.0 60 137394.0 61 111731.5 62 89381.0 63 68850.5 64 51930.5 65 39300.5 66 30065.0 67 22718.5 68 16984.0 69 12209.0 70 8512.5 71 6148.5 72 4253.0 73 2871.0 74 2056.0 75 1399.0 76 909.0 77 587.0 78 390.5 79 266.0 80 171.0 81 118.5 82 92.5 83 60.5 84 36.5 85 29.5 86 28.0 87 20.5 88 12.5 89 5.5 90 2.0 91 3.0 92 2.5 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.246262829188638E-4 4 2.1173772302334368E-4 5 4.02301673744353E-4 6 2.2232460917451084E-4 7 0.0031125445284431517 8 6.246262829188638E-4 9 3.387803568373499E-4 10-11 1.2174919073842259E-4 12-13 3.176065845350155E-5 14-15 1.5350984919192416E-4 16-17 9.528197536050466E-4 18-19 2.1173772302334367E-5 20-21 0.0 22-23 0.002890517825680493 24-25 0.006994799914304434 26-27 0.03591929859001524 28-29 0.27911668489389463 30-31 0.24428490117256646 32-33 0.2516220728343921 34-35 0.13302319470654278 36-37 0.024808935328341494 38-39 0.016053828886641662 40-41 0.009140450856666678 42-43 0.006029551678550795 44-45 0.006566710290612985 46-47 0.0014233606735342707 48-49 0.0020155415659129814 50-51 0.0028540852322721383 52-53 0.0017121110397604687 54-55 2.300593075640452E-4 56-57 0.001751517034141127 58-59 0.0030537557539456776 60-61 0.01324273899263712 62-63 0.00800052241506484 64-65 0.0023301229283976045 66-67 0.0016249256808711446 68-69 0.00224767477432151 70-71 0.004120726138768237 72-73 0.0036435883157684874 74-75 0.0038946500322397486 76-77 0.0015178521091639237 78-79 6.446111666765937E-5 80-81 4.1073387124692745E-4 82-83 1.9787173123320193E-5 84-85 0.0 86-87 6.753295236644244E-6 88-89 0.0 90-91 4.994889950087174E-4 92-93 0.007768659326610075 94-95 9.88097577070179E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 155.0 20-21 565.0 22-23 1279.0 24-25 3452.0 26-27 4798.0 28-29 8032.0 30-31 18191.0 32-33 24068.0 34-35 34460.0 36-37 48669.0 38-39 58538.0 40-41 62994.0 42-43 75119.0 44-45 89655.0 46-47 89669.0 48-49 78807.0 50-51 69651.0 52-53 66743.0 54-55 71070.0 56-57 74422.0 58-59 74193.0 60-61 73775.0 62-63 72780.0 64-65 77499.0 66-67 82363.0 68-69 83027.0 70-71 81595.0 72-73 78993.0 74-75 80861.0 76-77 81913.0 78-79 86797.0 80-81 89130.0 82-83 87197.0 84-85 88427.0 86-87 93765.0 88-89 99389.0 90-91 107342.0 92-93 112609.0 94-95 126042.0 96-97 188584.0 98-99 803643.0 100-101 5895387.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.76699597660235 #Duplication Level Percentage of deduplicated Percentage of total 1 89.74546624709322 76.97199042532746 2 7.261641581575562 12.456183686210391 3 1.7060165260506905 4.389597375774201 4 0.6433913491820509 2.2072697302671083 5 0.26827332305327184 1.1504498509469854 6 0.14083792011238774 0.7247547196579321 7 0.07578709055014164 0.4550021763204677 8 0.045070121925289565 0.309242317266503 9 0.029940607688319014 0.23111243812269774 >10 0.08248257724589994 1.007090409543822 >50 8.532192289064101E-4 0.045723610234118375 >100 2.2091478079200522E-4 0.04179788736574029 >500 1.8521513476874028E-5 0.009785372962606108 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0586886151167184E-5 2 0.0 1.0586886151167184E-5 0.0 1.0586886151167184E-5 1.0586886151167184E-5 3 0.0 1.0586886151167184E-5 0.0 2.1173772302334367E-5 1.0586886151167184E-5 4 0.0 1.0586886151167184E-5 0.0 4.2347544604668735E-5 1.0586886151167184E-5 5 0.0 2.1173772302334367E-5 0.0 6.35213169070031E-5 1.0586886151167184E-5 6 0.0 2.1173772302334367E-5 0.0 6.35213169070031E-5 4.2347544604668735E-5 7 1.0586886151167184E-5 2.1173772302334367E-5 0.0 6.35213169070031E-5 4.2347544604668735E-5 8 1.0586886151167184E-5 2.1173772302334367E-5 0.0 8.469508920933747E-5 4.2347544604668735E-5 9 2.1173772302334367E-5 2.1173772302334367E-5 0.0 9.528197536050464E-5 5.293443075583591E-5 10-11 2.1173772302334367E-5 3.176065845350155E-5 0.0 1.0057541843608823E-4 5.293443075583591E-5 12-13 2.1173772302334367E-5 5.293443075583591E-5 0.0 1.217491907384226E-4 5.293443075583591E-5 14-15 2.6467215377917957E-5 5.8227873831419506E-5 0.0 1.5350984919192416E-4 5.8227873831419506E-5 16-17 3.176065845350155E-5 7.940164613375386E-5 0.0 1.6939017841867494E-4 6.35213169070031E-5 18-19 3.176065845350155E-5 9.528197536050464E-5 0.0 1.7997706456984212E-4 8.469508920933747E-5 20-21 3.176065845350155E-5 1.1116230458725542E-4 0.0 1.8527050764542572E-4 8.469508920933747E-5 22-23 3.176065845350155E-5 1.270426338140062E-4 0.0 1.9585739379659287E-4 8.469508920933747E-5 24-25 3.176065845350155E-5 1.3762951996517338E-4 0.0 2.434983814768452E-4 8.469508920933747E-5 26-27 3.176065845350155E-5 1.3762951996517338E-4 0.0 3.0172625530826475E-4 8.469508920933747E-5 28-29 3.176065845350155E-5 1.3762951996517338E-4 0.0 6.034525106165294E-4 8.469508920933747E-5 30-31 3.176065845350155E-5 1.3762951996517338E-4 0.0 0.0013815886427273173 8.998853228492105E-5 32-33 3.176065845350155E-5 1.4292296304075697E-4 0.0 0.00300667566693148 1.270426338140062E-4 34-35 3.176065845350155E-5 1.5350984919192416E-4 0.0 0.005399311937095263 1.3762951996517338E-4 36-37 3.176065845350155E-5 1.6939017841867494E-4 0.0 0.009231764723817783 1.3762951996517338E-4 38-39 3.176065845350155E-5 1.9056395072100928E-4 0.0 0.015594483300669261 1.3762951996517338E-4 40-41 3.176065845350155E-5 2.487918245524288E-4 0.0 0.0221636461574685 1.3762951996517338E-4 42-43 4.2347544604668735E-5 2.646721537791796E-4 0.0 0.028171704048255874 1.3762951996517338E-4 44-45 4.2347544604668735E-5 2.911393691570975E-4 0.0 0.03556135058177057 1.3762951996517338E-4 46-47 4.2347544604668735E-5 3.0172625530826475E-4 0.0 0.04398851195809965 1.3762951996517338E-4 48-49 4.2347544604668735E-5 3.229000276105991E-4 0.0 0.05188632902687036 1.3762951996517338E-4 50-51 4.2347544604668735E-5 3.3348691376176626E-4 0.0 0.05971003789258292 1.3762951996517338E-4 52-53 4.2347544604668735E-5 3.387803568373499E-4 0.0 0.06748081232753964 1.3762951996517338E-4 54-55 4.764098768025232E-5 4.287688891222709E-4 0.0 0.07604560322383389 1.4821640611634057E-4 56-57 7.940164613375386E-5 4.92290206029274E-4 0.0 0.08266240706831338 1.5880329226750775E-4 58-59 1.0586886151167183E-4 5.134639783316084E-4 0.0 0.08788174194083878 1.5880329226750775E-4 60-61 1.1645574766283901E-4 5.346377506339427E-4 0.0 0.09310107681336421 1.6939017841867494E-4 62-63 1.270426338140062E-4 5.399311937095263E-4 0.0 0.09815102150747096 1.6939017841867494E-4 64-65 1.270426338140062E-4 5.928656244653623E-4 0.0 0.10328566129078703 1.6939017841867494E-4 66-67 1.3762951996517338E-4 6.034525106165294E-4 0.0 0.10884377652014982 1.6939017841867494E-4 68-69 1.5350984919192416E-4 6.140393967676966E-4 0.0 0.11449717372487309 1.7468362149425853E-4 70-71 1.5880329226750775E-4 6.193328398432802E-4 0.0 0.11967945449586942 2.0115083687217647E-4 72-73 1.5880329226750775E-4 6.246262829188638E-4 0.0 0.12370247123331295 2.2232460917451084E-4 74-75 1.5880329226750775E-4 6.246262829188638E-4 0.0 0.12737082728469237 2.2232460917451084E-4 76-77 1.5880329226750775E-4 6.35213169070031E-4 0.0 0.13041455705315294 2.2232460917451084E-4 78-79 1.6939017841867494E-4 6.35213169070031E-4 0.0 0.1330771589201715 2.2232460917451084E-4 80-81 1.7468362149425853E-4 6.35213169070031E-4 0.0 0.13432111804293365 2.2232460917451084E-4 82-83 1.7997706456984212E-4 6.35213169070031E-4 0.0 0.13481340824896293 2.2232460917451084E-4 84-85 1.7997706456984212E-4 6.35213169070031E-4 0.0 0.13512042794734674 2.2232460917451084E-4 86-87 1.7997706456984212E-4 6.35213169070031E-4 0.0 0.13523688369500958 2.2232460917451084E-4 88-89 1.7997706456984212E-4 6.563869413723654E-4 0.0 0.13525805746731193 2.3291149532567802E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12585 0.0 49.052612 1 GTATCAA 23855 0.0 38.074253 1 ATCAACG 29815 0.0 29.832914 3 TCAACGC 30005 0.0 29.829418 4 CAACGCA 30685 0.0 29.12661 5 TATCAAC 30905 0.0 29.001905 2 AACGCAG 31650 0.0 28.292542 6 ACGCAGA 35820 0.0 24.963074 7 CGCAGAG 36765 0.0 24.332403 8 GCAGAGT 41890 0.0 21.161592 9 GTACATG 28790 0.0 20.923048 1 GTGGTAT 6330 0.0 20.517166 1 TACATGG 29060 0.0 20.434734 2 ACATGGG 29705 0.0 19.47327 3 AGAGTAC 38675 0.0 19.341831 10-11 GAGTACT 25415 0.0 19.087101 12-13 TGGTATC 6350 0.0 18.905249 2 TATACCG 840 0.0 18.309547 5 CAGAGTA 40990 0.0 18.20777 10-11 CATGGGG 21250 0.0 18.114246 4 >>END_MODULE