##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139011_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9902600 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.633148264092256 34.0 31.0 34.0 31.0 34.0 2 32.76294730676792 34.0 31.0 34.0 31.0 34.0 3 33.40380839375518 34.0 31.0 34.0 31.0 37.0 4 36.19646961404076 37.0 35.0 37.0 35.0 37.0 5 36.153486256134755 37.0 35.0 37.0 35.0 37.0 6 36.180148445862706 37.0 36.0 37.0 35.0 37.0 7 36.18841031648254 37.0 36.0 37.0 35.0 37.0 8 36.46675428675297 37.0 37.0 37.0 35.0 39.0 9 37.81964251812655 39.0 38.0 39.0 35.0 39.0 10-11 37.785292801890414 39.0 38.0 39.0 35.0 39.0 12-13 37.922517268192195 39.0 38.0 39.0 35.0 40.0 14-15 39.09969311090017 40.0 38.0 41.0 36.0 41.0 16-17 39.05709308666411 40.0 38.0 41.0 36.0 41.0 18-19 39.01026008321047 40.0 38.5 41.0 35.0 41.0 20-21 39.05193941058069 40.0 39.0 41.0 35.0 41.0 22-23 38.9861351007856 40.0 38.5 41.0 35.0 41.0 24-25 38.90599853520111 40.0 38.0 41.0 35.0 41.0 26-27 38.83058843785429 40.0 38.0 41.0 35.0 41.0 28-29 38.616428844635344 40.0 38.0 41.0 34.5 41.0 30-31 38.56330305226636 40.0 38.0 41.0 34.0 41.0 32-33 38.47580170394785 40.0 38.0 41.0 34.0 41.0 34-35 38.3177519413712 40.0 38.0 41.0 34.0 41.0 36-37 38.45160217078666 40.0 38.0 41.0 34.0 41.0 38-39 38.549666470314875 40.0 38.0 41.0 34.0 41.0 40-41 38.530128425819875 40.0 38.0 41.0 34.0 41.0 42-43 38.41632122452383 40.0 38.0 41.0 34.0 41.0 44-45 38.365658659712864 40.0 38.0 41.0 34.0 41.0 46-47 38.36083571299929 40.0 38.0 41.0 34.0 41.0 48-49 38.25338983485908 40.0 38.0 41.0 33.0 41.0 50-51 38.18026030768933 40.0 37.5 41.0 33.0 41.0 52-53 38.10870101209066 40.0 37.0 41.0 33.0 41.0 54-55 37.999283165778486 40.0 37.0 41.0 33.0 41.0 56-57 37.843467993419495 40.0 37.0 41.0 33.0 41.0 58-59 37.68872465520279 39.5 36.0 41.0 33.0 41.0 60-61 37.50137375903605 39.0 36.0 41.0 33.0 41.0 62-63 37.28218378835177 39.0 35.5 40.5 32.0 41.0 64-65 37.034607238197864 38.5 35.0 40.0 32.0 41.0 66-67 36.75198005178687 38.0 35.0 40.0 32.0 41.0 68-69 36.44196136150742 37.0 35.0 40.0 31.0 41.0 70-71 36.138168672925104 37.0 35.0 39.5 31.0 41.0 72-73 35.80427379186453 36.0 34.5 39.0 31.0 40.5 74-75 35.37635330831106 36.0 34.0 38.5 30.5 40.0 76-77 34.55807774545568 35.0 33.5 37.0 29.5 39.0 78-79 34.78884666577888 35.0 34.0 37.0 30.0 39.0 80-81 34.61200712118713 35.0 34.0 37.0 30.0 39.0 82-83 34.3495774786838 35.0 34.0 36.0 30.0 38.5 84-85 34.08699078800031 35.0 34.0 36.0 30.0 37.0 86-87 33.83862131172702 35.0 34.0 35.5 30.0 37.0 88-89 33.61966738451862 35.0 33.5 35.0 30.0 36.5 90-91 33.50387946762082 35.0 33.0 35.0 30.0 36.0 92-93 33.42878673192463 35.0 33.0 35.0 30.0 36.0 94-95 33.35512638237489 35.0 33.0 35.0 30.0 36.0 96-97 33.34901691128324 35.0 33.0 35.0 30.0 35.0 98-99 33.346883375718875 34.5 33.0 35.0 30.0 35.0 100-101 31.927155846351233 33.0 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 0.0 18 3.0 19 7.0 20 47.0 21 290.0 22 1357.0 23 4680.0 24 11565.0 25 23834.0 26 42064.0 27 65673.0 28 94523.0 29 126312.0 30 161388.0 31 203202.0 32 256543.0 33 331933.0 34 456259.0 35 655699.0 36 1085048.0 37 2104007.0 38 2825493.0 39 1367855.0 40 84817.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.03081021304218 0.02112577988411722 26.299586381062014 30.648477626011694 2 14.12645415430751 25.123096745422934 37.88082637479113 22.86962272547843 3 15.541088107017423 25.28340969591934 33.89327401654747 25.28222818051576 4 12.66004057331801 24.267949916420662 37.545325368664514 25.526684141596824 5 16.972537191407955 36.91925599814836 32.4662743639117 13.641932446531987 6 27.326844695720016 37.93308202409867 20.75661186356108 13.983461416620239 7 25.430460299130566 33.29864128417807 23.066509869107026 18.20438854758434 8 23.845429478411337 32.41624493122215 22.526686348495613 21.211639241870895 9 23.3935190196975 20.755720531708114 24.321681550335995 31.529078898258394 10-11 24.25522284920727 26.351517223822086 29.143992891558806 20.249267035411837 12-13 24.536540721241177 24.53277908136412 28.95546278975735 21.975217407637352 14-15 21.984485159857524 26.97779321931494 27.021635313653253 24.016086307174284 16-17 21.18135640212417 29.114707767943614 27.994202675213735 21.709733154718478 18-19 21.300067239947346 28.306987799309784 29.603965950139035 20.788979010603835 20-21 22.014748250134225 27.617070629183164 29.471657453533712 20.896523667148898 22-23 21.86367091675278 27.351685952667754 29.26477767329437 21.519865457285096 24-25 21.541780425551174 27.638377681113035 29.42990331100992 21.389938582325872 26-27 21.532648460968755 27.835653892278607 29.245949853233327 21.38574779351931 28-29 21.589696816986482 27.685124863177013 29.217785695780705 21.5073926240558 30-31 21.731666691280292 27.633679786643995 29.247800924569074 21.386852597506632 32-33 21.552040828730128 27.902997486349317 29.12214578482249 21.422815900098062 34-35 21.791271205333945 27.75148671180635 29.023842410790156 21.433399672069545 36-37 21.683536843534714 27.821376089623328 29.048204617547203 21.446882449294755 38-39 21.560357490261868 28.033759335225593 29.05154498793494 21.3543381865776 40-41 21.85211430670016 27.738214607075246 28.826428660373065 21.58324242585153 42-43 21.693455583678816 27.8723083284212 28.75922314469018 21.675012943209804 44-45 21.82891500812388 28.130451142746477 28.41007870918307 21.630555139946573 46-47 21.90465753727367 27.933824162551264 28.222301110822436 21.93921718935263 48-49 21.822720586953636 28.14249608147843 28.223363103817693 21.81142022775024 50-51 21.908086246356046 28.359296238718557 27.90679697696241 21.82582053796299 52-53 22.033583163794095 28.091193934275772 27.889099092339855 21.98612380959028 54-55 21.94537837160654 28.076467113419845 28.004856360163995 21.97329815480962 56-57 21.919382712023886 28.330201333052074 27.87127013036618 21.879145824557856 58-59 21.99264894487078 28.156983065915753 27.921290686186516 21.929077303026954 60-61 21.989991281716435 28.18621810978193 27.94141272785826 21.88237788064337 62-63 21.93024201706162 28.352833550221863 27.860018674766167 21.856905757950347 64-65 22.01358007228752 28.10007210352548 27.813026473608616 22.073321350578382 66-67 21.92383522843258 28.19900246604592 27.81373179249068 22.06343051303082 68-69 21.95152651651719 28.261939098952936 27.81567232074451 21.97086206378536 70-71 22.00966832071223 27.923449520575073 27.823737105555086 22.24314505315762 72-73 21.996819986968575 28.06304870520807 27.79991530112655 22.140216006696807 74-75 21.907778154717704 28.189659672499896 27.79840046934875 22.10416170343365 76-77 22.083140985893447 27.972318129820305 27.685439103417796 22.259101780868452 78-79 21.91001722443672 28.04012484512464 27.82900955742937 22.220848373009268 80-81 22.003672558268452 28.14762985038419 27.698531195976013 22.15016639537134 82-83 22.10974829981837 27.9393364948143 27.809747817911074 22.141167387456257 84-85 22.132689826279794 27.947269322541008 27.85360069050611 22.06644016067309 86-87 22.021145524165313 27.99788520055784 27.80799399649705 22.172975278779802 88-89 22.075878974374923 27.821754631430238 27.830374126963058 22.271992267231774 90-91 22.102090394989098 27.90059774290034 27.846286658477432 22.151025203633132 92-93 22.085386770898324 27.881698898480657 27.897092886754592 22.135821443866426 94-95 22.033211168729547 27.809373449037178 27.92156811241171 22.235847269821566 96-97 21.88684199128556 27.987996288353894 28.03475573769461 22.090405982665935 98-99 22.30550699414999 28.916764717244103 27.895663874326694 20.882064414279213 100-101 22.654012643959664 31.021135782753028 24.843563735466294 21.481287837821007 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2082.0 1 1869.5 2 2660.0 3 3876.5 4 5217.0 5 7882.5 6 9941.5 7 11879.0 8 13557.0 9 13726.5 10 12703.5 11 11705.5 12 13048.5 13 17255.5 14 27902.0 15 43659.5 16 57089.0 17 64389.0 18 64782.5 19 60546.5 20 54681.0 21 49454.5 22 47359.5 23 50700.5 24 59359.5 25 73155.0 26 91412.0 27 112227.5 28 135452.0 29 160484.0 30 185248.0 31 209005.5 32 233091.5 33 256701.5 34 279198.5 35 299063.0 36 319870.5 37 339964.5 38 354970.0 39 367059.0 40 377564.5 41 387256.0 42 392370.5 43 396906.0 44 403229.0 45 407387.0 46 408837.5 47 407344.5 48 404233.5 49 397198.0 50 385950.5 51 371662.5 52 353423.0 53 333129.5 54 312259.5 55 289101.5 56 264151.0 57 237615.5 58 209771.0 59 181044.5 60 150626.0 61 122089.5 62 96952.0 63 74952.0 64 56064.5 65 41481.5 66 31076.5 67 23310.5 68 17480.0 69 12712.5 70 8950.5 71 6475.5 72 4618.5 73 3179.5 74 2205.0 75 1540.0 76 1052.0 77 657.5 78 404.0 79 265.0 80 181.5 81 127.5 82 103.5 83 76.5 84 46.0 85 25.0 86 15.0 87 12.5 88 11.5 89 11.0 90 7.5 91 4.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 7.068850604891645E-5 2 2.3226223416072546E-4 3 6.361965544402481E-4 4 3.3324581423060614E-4 5 4.4432775230747484E-4 6 5.958031224122958E-4 7 0.002373114131642195 8 6.563932704542241E-4 9 2.4236059216771352E-4 10-11 7.068850604891645E-5 12-13 4.0393432027952256E-5 14-15 1.6662290711530307E-4 16-17 0.0010249833377092884 18-19 4.544261103144629E-5 20-21 2.019736970664179E-4 22-23 0.0032167129294286513 24-25 0.01110692728296223 26-27 0.0715080420525092 28-29 0.27197646376193724 30-31 0.24558243968612223 32-33 0.24438851121841135 34-35 0.10841301373470695 36-37 0.02383052905461347 38-39 0.015373362415553194 40-41 0.008616448349670689 42-43 0.006030765452168498 44-45 0.006815230631138211 46-47 0.0015563818721563497 48-49 0.0020272658678202275 50-51 0.002639703180523188 52-53 0.0013576767871020486 54-55 2.7485436566580834E-4 56-57 0.0015471220950495253 58-59 0.003379629785057784 60-61 0.01283380744455688 62-63 0.00832313213191589 64-65 0.0021734083147702415 66-67 0.0021022769343343344 68-69 0.002722746481319612 70-71 0.004032455574496237 72-73 0.0038830294892719624 74-75 0.0035304069469204225 76-77 0.0013589885060792393 78-79 1.3002361724217184E-4 80-81 3.195262090433185E-4 82-83 6.340885094982336E-6 84-85 0.0 86-87 1.3001347394637243E-5 88-89 6.589824046426101E-5 90-91 0.001578085896820197 92-93 0.007200552785078715 94-95 7.949161311639266E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 171.0 20-21 735.0 22-23 1456.0 24-25 3700.0 26-27 5429.0 28-29 10040.0 30-31 19943.0 32-33 27301.0 34-35 39564.0 36-37 54118.0 38-39 62306.0 40-41 66643.0 42-43 80189.0 44-45 94290.0 46-47 92648.0 48-49 81896.0 50-51 74063.0 52-53 73123.0 54-55 78065.0 56-57 80855.0 58-59 80718.0 60-61 78997.0 62-63 79438.0 64-65 85400.0 66-67 88269.0 68-69 89367.0 70-71 88136.0 72-73 86824.0 74-75 88684.0 76-77 91131.0 78-79 94522.0 80-81 95506.0 82-83 94895.0 84-85 97214.0 86-87 102804.0 88-89 108371.0 90-91 115591.0 92-93 122879.0 94-95 141958.0 96-97 254771.0 98-99 994129.0 100-101 5876461.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.08312058204204 #Duplication Level Percentage of deduplicated Percentage of total 1 88.63696869675428 73.64235958259121 2 7.571489761249824 12.581259936392316 3 2.071028083617505 5.162024279999658 4 0.7879281749114762 2.6185412626463394 5 0.3593700324711673 1.4928791870687175 6 0.1964794444159974 0.9794475223384163 7 0.10624412667911728 0.6178965511610396 8 0.06997318369525929 0.46508723667700835 9 0.044813331903603766 0.3350908312407165 >10 0.15309997153988855 1.905998381552945 >50 0.0021279778763308253 0.11651038690977929 >100 4.352192779273808E-4 0.05999875123894531 >500 4.199560764447088E-5 0.022906090182924384 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 4.0393432027952256E-5 0.0 0.0 0.0 3 0.0 4.0393432027952256E-5 0.0 1.0098358006988064E-5 0.0 4 0.0 4.0393432027952256E-5 0.0 2.0196716013976128E-5 0.0 5 0.0 4.0393432027952256E-5 0.0 2.0196716013976128E-5 0.0 6 5.049179003494032E-5 4.0393432027952256E-5 0.0 2.0196716013976128E-5 0.0 7 5.049179003494032E-5 4.0393432027952256E-5 0.0 2.0196716013976128E-5 0.0 8 5.049179003494032E-5 5.049179003494032E-5 0.0 4.0393432027952256E-5 1.0098358006988064E-5 9 6.059014804192838E-5 1.0098358006988064E-4 0.0 4.0393432027952256E-5 1.0098358006988064E-5 10-11 6.563932704542241E-5 1.0098358006988064E-4 0.0 5.049179003494032E-5 1.0098358006988064E-5 12-13 7.068850604891645E-5 1.0098358006988064E-4 0.0 7.068850604891645E-5 1.0098358006988064E-5 14-15 7.068850604891645E-5 1.716720861187971E-4 0.0 8.078686405590451E-5 1.5147537010482095E-5 16-17 1.3127865409084483E-4 1.9186880213277322E-4 0.0 9.088522206289258E-5 2.0196716013976128E-5 18-19 1.3632783309433885E-4 1.9186880213277322E-4 0.0 9.593440106638661E-5 2.0196716013976128E-5 20-21 1.413770120978329E-4 1.9691798113626724E-4 0.0 1.110819380768687E-4 2.0196716013976128E-5 22-23 1.413770120978329E-4 2.3226223416072546E-4 0.0 1.3127865409084483E-4 2.5245895017470158E-5 24-25 1.4642619110132694E-4 2.3226223416072546E-4 0.0 1.3632783309433885E-4 3.029507402096419E-5 26-27 1.5147537010482096E-4 2.3226223416072546E-4 0.0 2.4236059216771352E-4 3.029507402096419E-5 28-29 1.5652454910831498E-4 2.3226223416072546E-4 0.0 5.756064063983196E-4 3.029507402096419E-5 30-31 1.6157372811180902E-4 2.4236059216771352E-4 0.0 0.0016359339971320664 3.029507402096419E-5 32-33 1.6157372811180902E-4 2.4236059216771352E-4 0.0 0.0038272776846484764 3.029507402096419E-5 34-35 1.8177044412578516E-4 2.6255730818168965E-4 0.0 0.006604326136570193 4.0393432027952256E-5 36-37 1.868196231292792E-4 2.827540241956658E-4 0.0 0.010891079110536626 4.0393432027952256E-5 38-39 1.9186880213277322E-4 3.029507402096419E-4 0.0 0.016808716902631634 4.0393432027952256E-5 40-41 1.9186880213277322E-4 3.332458142306061E-4 0.0 0.023549370872296166 4.0393432027952256E-5 42-43 1.9186880213277322E-4 4.1403267828651056E-4 0.0 0.02974471350958334 5.0491790034940315E-5 44-45 1.9186880213277322E-4 4.948195423424151E-4 0.0 0.037575990144002584 6.059014804192838E-5 46-47 1.9186880213277322E-4 4.948195423424151E-4 0.0 0.046215135418980875 8.078686405590451E-5 48-49 2.2216387615373742E-4 4.948195423424151E-4 0.0 0.05455637913275302 8.078686405590451E-5 50-51 2.6255730818168965E-4 6.412457334437421E-4 0.0 0.06262496718033647 8.078686405590451E-5 52-53 2.7265566618867775E-4 6.462949124472361E-4 0.0 0.07109748954819946 8.078686405590451E-5 54-55 2.7265566618867775E-4 6.513440914507301E-4 0.0 0.07966594631712884 8.078686405590451E-5 56-57 2.7265566618867775E-4 6.563932704542241E-4 0.0 0.08634601013875144 8.078686405590451E-5 58-59 2.7265566618867775E-4 6.614424494577182E-4 0.0 0.09198594308565428 8.078686405590451E-5 60-61 2.878032031991598E-4 6.715408074647062E-4 0.0 0.09757033506351867 8.078686405590451E-5 62-63 2.928523822026538E-4 6.816391654716943E-4 0.0 0.10290731727021186 9.088522206289258E-5 64-65 3.029507402096419E-4 8.381637145800093E-4 0.0 0.10824429947690506 9.088522206289258E-5 66-67 3.2314745622361805E-4 8.482620725869973E-4 0.0 0.11366711772665765 9.593440106638661E-5 68-69 3.2314745622361805E-4 8.785571466079615E-4 0.0 0.11950901783370024 1.0098358006988064E-4 70-71 3.2819663522711207E-4 8.987538626219377E-4 0.0 0.12490154100943188 1.110819380768687E-4 72-73 3.534425302445822E-4 8.987538626219377E-4 0.0 0.12931452345848565 1.2118029608385676E-4 74-75 3.5849170924807624E-4 9.038030416254317E-4 0.0 0.13275301435986508 1.2118029608385676E-4 76-77 3.635408882515703E-4 9.340981156463958E-4 0.0 0.1360400298911397 1.262294750873508E-4 78-79 3.635408882515703E-4 9.59344010663866E-4 0.0 0.13888271767010685 1.3127865409084483E-4 80-81 3.635408882515703E-4 9.59344010663866E-4 0.0 0.1402005533900188 1.3632783309433885E-4 82-83 3.635408882515703E-4 9.59344010663866E-4 0.0 0.1406347827843193 1.413770120978329E-4 84-85 3.635408882515703E-4 9.59344010663866E-4 0.0 0.14089229091349748 1.413770120978329E-4 86-87 3.786884252620524E-4 9.896390846848302E-4 0.0 0.14097812695655687 1.413770120978329E-4 88-89 3.938359622725345E-4 0.0010249833377092886 0.0 0.14099327449356736 1.413770120978329E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12005 0.0 48.62542 1 GTATCAA 22760 0.0 37.557312 1 ATCAACG 26840 0.0 31.294453 3 TCAACGC 28170 0.0 29.847101 4 CAACGCA 28895 0.0 29.098211 5 TATCAAC 29280 0.0 28.976782 2 AACGCAG 29255 0.0 28.842089 6 ACGCAGA 29610 0.0 28.496153 7 CGCAGAG 34655 0.0 24.35951 8 GCAGAGT 40305 0.0 20.712658 9 GTACATG 27180 0.0 20.085955 1 ACATGGG 26560 0.0 19.707241 3 TACATGG 27500 0.0 19.466194 2 AGAGTAC 36310 0.0 19.113075 10-11 GAGTACT 24650 0.0 18.769468 12-13 GTGGTAT 6460 0.0 18.085854 1 CAGAGTA 39280 0.0 17.824749 10-11 CATGGGG 20455 0.0 17.260157 4 AGTACTT 26970 0.0 17.194273 12-13 TGGTATC 6280 0.0 17.183723 2 >>END_MODULE