##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139009_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11892859 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.47352474287301 34.0 31.0 34.0 31.0 34.0 2 32.62170332634062 34.0 31.0 34.0 31.0 34.0 3 32.61927203542899 34.0 31.0 34.0 31.0 34.0 4 36.185295226320264 37.0 35.0 37.0 35.0 37.0 5 36.11991414343683 37.0 35.0 37.0 35.0 37.0 6 36.14610910631329 37.0 36.0 37.0 35.0 37.0 7 36.095586015103684 37.0 36.0 37.0 35.0 37.0 8 36.08322515216904 37.0 36.0 37.0 35.0 37.0 9 37.785900093493076 39.0 38.0 39.0 35.0 39.0 10-11 37.72739170623312 39.0 37.5 39.0 35.0 39.0 12-13 37.69669782514028 39.0 37.0 39.0 35.0 39.0 14-15 39.030313106377534 40.0 38.0 41.0 36.0 41.0 16-17 39.004534107400076 40.0 38.0 41.0 36.0 41.0 18-19 38.93234053308797 40.0 38.5 41.0 35.0 41.0 20-21 38.993308928181634 40.0 38.5 41.0 35.0 41.0 22-23 38.92540417511972 40.0 38.0 41.0 35.0 41.0 24-25 38.85204144682058 40.0 38.0 41.0 35.0 41.0 26-27 38.77136883153411 40.0 38.0 41.0 35.0 41.0 28-29 38.559046391281925 40.0 38.0 41.0 34.5 41.0 30-31 38.4849447341189 40.0 38.0 41.0 34.0 41.0 32-33 38.41779300135579 40.0 38.0 41.0 34.0 41.0 34-35 38.22991898888394 40.0 38.0 41.0 34.0 41.0 36-37 38.35364566700081 40.0 38.0 41.0 34.0 41.0 38-39 38.46531216074758 40.0 38.0 41.0 34.0 41.0 40-41 38.46856872426295 40.0 38.0 41.0 34.0 41.0 42-43 38.34714034187033 40.0 38.0 41.0 34.0 41.0 44-45 38.28865230654472 40.0 38.0 41.0 33.0 41.0 46-47 38.30256964077155 40.0 38.0 41.0 33.0 41.0 48-49 38.17893940718423 40.0 38.0 41.0 33.0 41.0 50-51 38.11982449963186 40.0 37.5 41.0 33.0 41.0 52-53 38.05132418590851 40.0 37.0 41.0 33.0 41.0 54-55 37.94496465768043 40.0 37.0 41.0 33.0 41.0 56-57 37.79848874472186 40.0 37.0 41.0 33.0 41.0 58-59 37.64965902245992 39.5 36.0 41.0 33.0 41.0 60-61 37.47898189277588 39.0 36.0 41.0 32.5 41.0 62-63 37.27243652562036 39.0 35.5 40.5 32.0 41.0 64-65 37.043895757599074 38.5 35.0 40.0 32.0 41.0 66-67 36.78042187788166 38.0 35.0 40.0 31.5 41.0 68-69 36.480803220308125 37.5 35.0 40.0 31.0 41.0 70-71 36.19357491666318 37.0 35.0 39.5 31.0 41.0 72-73 35.874462819966936 36.5 34.5 39.0 31.0 41.0 74-75 35.553344936861635 36.0 34.0 39.0 31.0 40.0 76-77 34.52775615530797 35.0 33.5 37.0 29.5 39.0 78-79 34.845739791978765 35.0 34.0 37.0 30.0 39.0 80-81 34.69146600507104 35.0 34.0 37.0 30.0 39.0 82-83 34.42128459243722 35.0 34.0 36.5 30.0 39.0 84-85 34.145051157763575 35.0 34.0 36.0 30.0 37.0 86-87 33.887227905259124 35.0 34.0 36.0 30.0 37.0 88-89 33.639495637549004 35.0 33.0 35.0 30.0 37.0 90-91 33.509464047581204 35.0 33.0 35.0 29.0 36.0 92-93 33.4311128799457 35.0 33.0 35.0 30.0 36.0 94-95 33.33667039050846 35.0 33.0 35.0 29.0 36.0 96-97 33.322634558004324 35.0 33.0 35.0 30.0 35.5 98-99 33.35473993047801 34.0 33.0 35.0 30.0 35.0 100-101 32.14402948465429 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 3.0 19 14.0 20 51.0 21 382.0 22 1747.0 23 5977.0 24 14847.0 25 30317.0 26 52928.0 27 82547.0 28 117233.0 29 157191.0 30 200733.0 31 252699.0 32 318124.0 33 411865.0 34 567256.0 35 805298.0 36 1323347.0 37 2525826.0 38 3386104.0 39 1573185.0 40 65184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.20587631619949 22.06582117891081 15.677037792174279 24.05126471271542 2 13.38272824053493 22.270111837700256 41.93719104884705 22.409968872917773 3 16.554127855323387 27.67254871987102 31.85896895815665 23.91435446664894 4 11.676683059165525 19.498087840766015 39.720746217177094 29.104482882891368 5 12.416986572974164 38.578930706422916 36.22520507146969 12.778877649133236 6 28.25289600693392 39.55422425978789 19.306589569304762 12.886290163973435 7 25.00726926413857 33.664428904915 24.09921246415189 17.22908936679454 8 23.696301891970794 37.47048630497283 21.72435823268967 17.1088535703667 9 25.08231025002674 16.992597542985642 21.900748755045907 36.02434345194171 10-11 23.323030922577626 27.458630071561917 29.661277503137917 19.55706150272254 12-13 24.302452123049488 25.1192575039262 29.718560068511714 20.859730304512603 14-15 21.510270949170717 26.499247719604725 27.404338551781514 24.586142779443044 16-17 20.862891257278594 29.7016291438061 28.020844632233928 21.41463496668138 18-19 20.948288539919382 28.67271085492746 29.91891267169865 20.46008793345451 20-21 21.757657836360774 27.796245546874914 29.81622605390242 20.629870562861893 22-23 21.430328429261085 27.844631570590906 29.654687674235902 21.070352325912108 24-25 21.216870117097137 28.008615981886802 29.725352013154883 21.049161887861178 26-27 21.176986055062553 28.170882303919836 29.646085972736408 21.0060456682812 28-29 20.998737790685354 28.071808725092602 29.657384768834333 21.272068715387714 30-31 21.384711432404842 27.961338285062592 29.704253698682432 20.94969658385013 32-33 21.158554869089706 28.206160545280394 29.517587978847192 21.117696606782708 34-35 21.284810640590216 28.24808168144939 29.6095593300988 20.8575483478616 36-37 21.365093239163745 28.142351751484163 29.432555923826413 21.05999908552568 38-39 21.168398362654404 28.205083134280567 29.50894130444238 21.11757719862265 40-41 21.358789142123648 28.07541814034972 29.415380809341222 21.150411908185415 42-43 21.368449006204077 28.177528426010458 29.17135252283809 21.282670044947377 44-45 21.404904428456046 28.359553165189205 28.930803120105708 21.304739286249042 46-47 21.524135776122506 28.280441766942378 28.595486883230915 21.599935573704197 48-49 21.505941567841116 28.400700966603797 28.550642563863583 21.542714901691507 50-51 21.458329736852704 28.518014411817173 28.47487462668531 21.548781224644813 52-53 21.50368312360054 28.50755790192896 28.44681739880585 21.54194157566465 54-55 21.561742482731855 28.416703305857478 28.3494306002575 21.672123611153165 56-57 21.663528592718393 28.558761308181747 28.242508880330764 21.5352012187691 58-59 21.44580099403143 28.714105357063886 28.401542418628146 21.43855123027654 60-61 21.629679270653327 28.748890040132242 28.21107235314121 21.41035833607322 62-63 21.560955252580083 28.836303839491322 28.125378002718566 21.477362905210033 64-65 21.52005463750039 28.7696115544652 28.135643583489895 21.57469022454451 66-67 21.59410523409592 28.66825159923163 28.085255748006745 21.652387418665707 68-69 21.563475407128845 28.613295816789762 28.163317155586086 21.659911620495308 70-71 21.54727136765523 28.457618614654436 28.194369218694376 21.800740798995957 72-73 21.59974307918046 28.499492537490607 28.170805262128614 21.72995912120032 74-75 21.50386835598347 28.612991484961388 28.145763732517633 21.737376426537512 76-77 21.593082872140563 28.52501641965063 28.080708310634332 21.80119239757447 78-79 21.516668265708944 28.564013025125828 28.058611007367812 21.86070770179742 80-81 21.561523431499975 28.60521923713875 28.07907697123585 21.754180360125424 82-83 21.589319040294637 28.579846347586084 28.155283794590186 21.67555081752909 84-85 21.68206745855508 28.55664361625595 28.075153966604173 21.6861349585848 86-87 21.531754303768107 28.563282981003013 28.159254449203054 21.745708266025826 88-89 21.59353784984674 28.507857652535158 28.095288317130994 21.803316180487112 90-91 21.60735385156595 28.575093941038677 28.13102969936428 21.686522508031096 92-93 21.646574660392492 28.51767936285991 28.163656346916206 21.67208962983139 94-95 21.469488007694235 28.630850904423855 28.155656210532797 21.744004877349116 96-97 21.421050843210498 28.66555473987791 28.212734932385874 21.700659484525715 98-99 21.627528547303694 29.20824691174677 28.28223732035587 20.881987220593665 100-101 22.073283949077375 31.9570487723551 25.504968651364496 20.464698627203028 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3978.0 1 3435.5 2 4101.0 3 5569.0 4 7038.0 5 9913.5 6 12219.5 7 14542.5 8 16754.5 9 17287.0 10 16374.0 11 15365.0 12 16893.5 13 22428.5 14 35884.5 15 54826.0 16 70300.5 17 78497.5 18 80002.5 19 76656.5 20 70975.5 21 65824.0 22 64122.5 23 68782.0 24 80025.0 25 98587.5 26 123908.0 27 152205.5 28 182724.0 29 215939.5 30 248046.0 31 278848.5 32 310868.5 33 341058.0 34 368710.5 35 392552.0 36 416612.0 37 439882.5 38 455790.5 39 465597.5 40 472701.0 41 479363.5 42 481667.0 43 483754.0 44 484780.5 45 483577.5 46 483008.0 47 478694.0 48 465007.0 49 448603.5 50 434787.5 51 414925.5 52 388783.5 53 360930.0 54 335626.5 55 308802.5 56 279258.0 57 248605.0 58 218176.5 59 187516.5 60 154929.5 61 125456.5 62 99255.0 63 76062.0 64 56899.0 65 42825.5 66 32768.0 67 24655.5 68 18514.5 69 13056.5 70 8631.0 71 6008.5 72 4243.0 73 2901.5 74 1887.5 75 1215.5 76 794.5 77 505.5 78 329.5 79 216.5 80 147.0 81 102.5 82 77.5 83 65.5 84 53.5 85 39.0 86 27.5 87 19.0 88 13.5 89 10.0 90 6.5 91 4.0 92 2.0 93 0.5 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.13813717963023E-4 4 1.7657654900306142E-4 5 4.5405398315072934E-4 6 1.5135132771690977E-4 7 0.0026990986776182246 8 6.306305321537907E-4 9 4.288287618645777E-4 10-11 9.66966815969146E-5 12-13 1.2612610643075814E-5 14-15 1.639639383599856E-4 16-17 9.165163733968427E-4 18-19 1.6816814190767754E-5 20-21 0.0 22-23 0.0027666739407486082 24-25 0.00693934332615595 26-27 0.035409584889935765 28-29 0.27893814310814563 30-31 0.24346028690517368 32-33 0.2509370651225945 34-35 0.1316463892347026 36-37 0.022758849703439686 38-39 0.015056330603323972 40-41 0.008262960453471269 42-43 0.0053828374080155655 44-45 0.006360466661537493 46-47 0.001404007292890712 48-49 0.0018676047420935911 50-51 0.002481510052813007 52-53 0.001463441398890494 54-55 1.4614551480556824E-4 56-57 0.0014236892866782214 58-59 0.0027575313389019036 60-61 0.012288085673021457 62-63 0.008020772711673072 64-65 0.0021907328556260174 66-67 0.0016433585260195373 68-69 0.0025845292521808737 70-71 0.004176428327380442 72-73 0.0037505282284853716 74-75 0.0038491627970153063 76-77 0.0016343013064075151 78-79 8.235404084513364E-5 80-81 5.25884366983355E-4 82-83 1.0537272334328263E-5 84-85 0.0 86-87 5.3964726388314086E-6 88-89 0.0 90-91 5.212450036725593E-4 92-93 0.008106482247197943 94-95 0.0011160726422493248 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 228.0 20-21 767.0 22-23 1701.0 24-25 5016.0 26-27 6360.0 28-29 10029.0 30-31 23194.0 32-33 30372.0 34-35 43093.0 36-37 60746.0 38-39 74286.0 40-41 78744.0 42-43 93555.0 44-45 111591.0 46-47 110650.0 48-49 97641.0 50-51 88209.0 52-53 85811.0 54-55 93855.0 56-57 99875.0 58-59 99251.0 60-61 99956.0 62-63 99591.0 64-65 104329.0 66-67 113131.0 68-69 106311.0 70-71 104157.0 72-73 100706.0 74-75 103100.0 76-77 104957.0 78-79 110493.0 80-81 113352.0 82-83 110794.0 84-85 112576.0 86-87 118369.0 88-89 126433.0 90-91 133542.0 92-93 141958.0 94-95 160739.0 96-97 241598.0 98-99 999547.0 100-101 7372246.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.72202244035572 #Duplication Level Percentage of deduplicated Percentage of total 1 88.55472950974121 73.25426321704443 2 7.517854806803678 12.437843080635 3 2.115050034893968 5.248836493469218 4 0.817330901978763 2.7044506085873365 5 0.3728919389097434 1.5423187669159775 6 0.20593580839610207 1.0221255938049092 7 0.12817138015621257 0.7421817049845507 8 0.0783751137755271 0.5186678336403668 9 0.045561196210921896 0.3392022865832398 >10 0.16137995485511913 1.9683385557716415 >50 0.002185416024897996 0.11919351925747718 >100 4.9811640160853E-4 0.08074040865544528 >500 3.5821852278857434E-5 0.02183793065044152 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.408407095383877E-6 2 0.0 2.522522128615163E-5 0.0 0.0 8.408407095383877E-6 3 0.0 2.522522128615163E-5 0.0 8.408407095383877E-6 8.408407095383877E-6 4 0.0 7.56756638584549E-5 0.0 8.408407095383877E-6 8.408407095383877E-6 5 0.0 7.56756638584549E-5 0.0 8.408407095383877E-6 8.408407095383877E-6 6 0.0 7.56756638584549E-5 0.0 8.408407095383877E-6 1.6816814190767754E-5 7 0.0 9.249247804922265E-5 0.0 8.408407095383877E-6 1.6816814190767754E-5 8 0.0 9.249247804922265E-5 0.0 8.408407095383877E-6 3.363362838153551E-5 9 0.0 1.849849560984453E-4 0.0 8.408407095383877E-6 3.363362838153551E-5 10-11 0.0 1.849849560984453E-4 0.0 1.6816814190767754E-5 3.363362838153551E-5 12-13 0.0 1.849849560984453E-4 0.0 2.522522128615163E-5 3.783783192922745E-5 14-15 0.0 2.396396022184405E-4 0.0 3.783783192922745E-5 4.2042035476919384E-5 16-17 0.0 2.4384380576613244E-4 0.0 5.045044257230326E-5 5.46546461199952E-5 18-19 0.0 2.606606199569002E-4 0.0 5.885884966768714E-5 5.885884966768714E-5 20-21 8.408407095383877E-6 2.7747743414766794E-4 0.0 7.147146031076296E-5 5.885884966768714E-5 22-23 8.408407095383877E-6 3.4474469091073896E-4 0.0 9.669668159691458E-5 6.726725676307101E-5 24-25 8.408407095383877E-6 3.6996991219689055E-4 0.0 1.0510508869229846E-4 8.408407095383877E-5 26-27 8.408407095383877E-6 3.867867263876583E-4 0.0 1.3873871707383397E-4 8.408407095383877E-5 28-29 8.408407095383877E-6 3.867867263876583E-4 0.0 2.7747743414766794E-4 8.408407095383877E-5 30-31 8.408407095383877E-6 4.79279204436881E-4 0.0 7.945944705137764E-4 8.828827450153071E-5 32-33 8.408407095383877E-6 4.8768761153226487E-4 0.0 0.002249248898015187 9.249247804922265E-5 34-35 8.408407095383877E-6 5.885884966768714E-4 0.0 0.004338738061218081 1.0090088514460652E-4 36-37 8.408407095383877E-6 6.894893818214779E-4 0.0 0.007163962845267064 1.0510508869229846E-4 38-39 8.408407095383877E-6 7.147146031076296E-4 0.0 0.011889487632872802 1.093092922399904E-4 40-41 8.408407095383877E-6 7.777776563230086E-4 0.0 0.017527324590327693 1.1351349578768235E-4 42-43 8.408407095383877E-6 8.072070811568522E-4 0.0 0.022954951370397984 1.1771769933537428E-4 44-45 8.408407095383877E-6 9.375373911353023E-4 0.0 0.02916456001033898 1.1771769933537428E-4 46-47 8.408407095383877E-6 0.0010426424798276007 0.0 0.03604684121791068 1.219219028830662E-4 48-49 1.2612610643075815E-5 0.0010510508869229847 0.0 0.04285344676162393 1.2612610643075815E-4 50-51 1.6816814190767754E-5 0.0011687685862583588 0.0 0.04977356580112486 1.2612610643075815E-4 52-53 2.1021017738459692E-5 0.0011813811969014348 0.0 0.05658857975193349 1.429429206215259E-4 54-55 2.522522128615163E-5 0.0011897896039968186 0.0 0.06359698706593594 1.639639383599856E-4 56-57 2.522522128615163E-5 0.0012192190288306622 0.0 0.07080719615022762 1.6816814190767754E-4 58-59 2.522522128615163E-5 0.0012192190288306622 0.0 0.07745824616267627 1.6816814190767754E-4 60-61 2.522522128615163E-5 0.001244444250116814 0.0 0.08352911608554343 1.6816814190767754E-4 62-63 2.522522128615163E-5 0.0012822820820460412 0.0 0.0895999860084106 1.6816814190767754E-4 64-65 2.522522128615163E-5 0.0014126123920244914 0.0 0.09603662163992695 1.6816814190767754E-4 66-67 2.522522128615163E-5 0.0014336334097629511 0.0 0.1026834674488279 1.7237234545536948E-4 68-69 2.522522128615163E-5 0.0014798796487875622 0.0 0.10935133427546732 1.7657654900306142E-4 70-71 2.522522128615163E-5 0.0015303300913598655 0.0 0.11551890087993139 1.7657654900306142E-4 72-73 2.522522128615163E-5 0.0015471469055506333 0.0 0.12036214336687251 2.2702699157536467E-4 74-75 2.522522128615163E-5 0.0015891889410275528 0.0 0.12456214271101676 2.3543539867074855E-4 76-77 2.522522128615163E-5 0.0016774772155290834 0.0 0.12820298298331798 2.3543539867074855E-4 78-79 2.522522128615163E-5 0.001715315047458311 0.0 0.13156634582147153 2.3543539867074855E-4 80-81 2.522522128615163E-5 0.001719519251006003 0.0 0.13290328254963757 2.438438057661324E-4 82-83 2.522522128615163E-5 0.0017321318616490787 0.0 0.13331109029376367 2.522522128615163E-4 84-85 2.522522128615163E-5 0.0017405402687444625 0.0 0.13365163078112674 2.522522128615163E-4 86-87 2.522522128615163E-5 0.0017489486758398465 0.0 0.13375253166627132 2.5645641640920823E-4 88-89 2.522522128615163E-5 0.0018120117290552256 0.0 0.13381139051593902 2.648648235045921E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15820 0.0 51.158596 1 GTATCAA 29415 0.0 37.583847 1 TCAACGC 36875 0.0 29.194525 4 ATCAACG 36865 0.0 29.133205 3 CAACGCA 37715 0.0 28.57808 5 TATCAAC 38325 0.0 28.290255 2 AACGCAG 38925 0.0 27.700548 6 ACGCAGA 44195 0.0 24.35874 7 CGCAGAG 44790 0.0 24.072607 8 CTTATAC 9045 0.0 22.004343 1 GCAGAGT 52020 0.0 20.546556 9 GTACATG 37630 0.0 20.023876 1 TACATGG 36640 0.0 19.936884 2 GTGGTAT 8035 0.0 19.83745 1 ACATGGG 37070 0.0 19.360718 3 TGGTATC 7635 0.0 19.258038 2 AGAGTAC 48015 0.0 19.189648 10-11 GAGTACT 31395 0.0 19.086199 12-13 TATACAC 13345 0.0 18.8743 3 CAGAGTA 51770 0.0 17.987116 10-11 >>END_MODULE