##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139008_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11432101 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.48540158978651 34.0 31.0 34.0 31.0 34.0 2 32.62726615168988 34.0 31.0 34.0 31.0 34.0 3 32.62182681905977 34.0 31.0 34.0 31.0 34.0 4 36.18499801567533 37.0 35.0 37.0 35.0 37.0 5 36.12178128937104 37.0 35.0 37.0 35.0 37.0 6 36.14718659326051 37.0 36.0 37.0 35.0 37.0 7 36.094656878906164 37.0 36.0 37.0 35.0 37.0 8 36.08174193002669 37.0 36.0 37.0 35.0 37.0 9 37.78727182343823 39.0 38.0 39.0 35.0 39.0 10-11 37.72639023220666 39.0 37.5 39.0 35.0 39.0 12-13 37.694138505249384 39.0 37.0 39.0 35.0 39.0 14-15 39.026003575370794 40.0 38.0 41.0 35.5 41.0 16-17 38.9934544840008 40.0 38.0 41.0 35.5 41.0 18-19 38.92230885643855 40.0 38.0 41.0 35.0 41.0 20-21 38.98570859920623 40.0 38.0 41.0 35.0 41.0 22-23 38.917049322793346 40.0 38.0 41.0 35.0 41.0 24-25 38.840749090615006 40.0 38.0 41.0 35.0 41.0 26-27 38.75312649417312 40.0 38.0 41.0 34.5 41.0 28-29 38.52799535406051 40.0 38.0 41.0 34.0 41.0 30-31 38.45424895777123 40.0 38.0 41.0 34.0 41.0 32-33 38.391188072020086 40.0 38.0 41.0 34.0 41.0 34-35 38.199290639066874 40.0 38.0 41.0 34.0 41.0 36-37 38.3261441631883 40.0 38.0 41.0 34.0 41.0 38-39 38.42603872461004 40.0 38.0 41.0 34.0 41.0 40-41 38.44986408181044 40.0 38.0 41.0 34.0 41.0 42-43 38.336285752751735 40.0 38.0 41.0 34.0 41.0 44-45 38.281085299299946 40.0 38.0 41.0 33.0 41.0 46-47 38.29351241891381 40.0 38.0 41.0 33.0 41.0 48-49 38.164934214028605 40.0 38.0 41.0 33.0 41.0 50-51 38.08538760881039 40.0 37.0 41.0 33.0 41.0 52-53 38.02320046707804 40.0 37.0 41.0 33.0 41.0 54-55 37.900315325071276 40.0 37.0 41.0 33.0 41.0 56-57 37.74030666940848 40.0 36.5 41.0 33.0 41.0 58-59 37.58586135715045 39.0 36.0 41.0 33.0 41.0 60-61 37.39837081527926 39.0 36.0 41.0 32.0 41.0 62-63 37.192176074897226 39.0 35.0 40.5 32.0 41.0 64-65 36.97056064691792 38.5 35.0 40.0 32.0 41.0 66-67 36.69993042254589 38.0 35.0 40.0 31.0 41.0 68-69 36.394377684342416 37.0 35.0 40.0 31.0 41.0 70-71 36.102125120366 37.0 35.0 39.5 31.0 41.0 72-73 35.7789987269786 36.0 34.5 39.0 31.0 40.5 74-75 35.45438501336559 36.0 34.0 39.0 31.0 40.0 76-77 34.43924213211582 35.0 33.5 37.0 29.5 39.0 78-79 34.75055799729644 35.0 34.0 37.0 30.0 39.0 80-81 34.59841079507338 35.0 34.0 37.0 30.0 39.0 82-83 34.33902018628922 35.0 34.0 36.0 30.0 38.5 84-85 34.074800324078 35.0 34.0 36.0 30.0 37.0 86-87 33.83232520212554 35.0 34.0 35.5 30.0 37.0 88-89 33.59345693363679 35.0 33.0 35.0 30.0 36.5 90-91 33.47154391204106 35.0 33.0 35.0 29.0 36.0 92-93 33.40047008552415 35.0 33.0 35.0 30.0 36.0 94-95 33.31751587216942 35.0 33.0 35.0 29.0 36.0 96-97 33.31034753733402 35.0 33.0 35.0 30.0 35.0 98-99 33.34505343057903 34.0 33.0 35.0 30.0 35.0 100-101 32.1411271574443 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 1.0 18 0.0 19 18.0 20 77.0 21 377.0 22 1723.0 23 5788.0 24 14576.0 25 29388.0 26 51852.0 27 80916.0 28 114376.0 29 152660.0 30 195070.0 31 243897.0 32 307954.0 33 397085.0 34 546651.0 35 782721.0 36 1287596.0 37 2469110.0 38 3222778.0 39 1465450.0 40 62035.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.41068031338777 21.65693281697438 15.445448819153858 24.486938050483992 2 13.570446374681817 21.772858879820856 41.77989170843502 22.876803037062306 3 16.865324776793916 27.262449138543648 31.60440537451072 24.267820710151717 4 11.764143481775767 19.346154323891547 38.844940459685134 30.04476173464755 5 12.561148209509046 38.42671399555286 35.88434630329092 13.127791491647175 6 28.626952794925437 38.879263923717794 19.0028565240469 13.49092675730987 7 25.4170388744088 33.37867182281547 23.24537508918115 17.958914213594586 8 24.13895236306613 36.84445277580986 21.45452169356054 17.56207316756346 9 25.14837671283803 16.85918098678715 21.30464789779611 36.68779440257872 10-11 23.633206017744524 27.109429373394136 29.094175732776083 20.16318887608526 12-13 24.763549504522224 24.642946084169857 29.04157478719783 21.551929624110084 14-15 21.976127271649762 26.02980690525982 26.738151163622202 25.25591465946821 16-17 21.38314507237751 29.34443077521666 27.320279978908335 21.95214417349749 18-19 21.46703424572488 28.167711291150965 29.073699811106422 21.291554652017737 20-21 22.286075610426355 27.170164376063894 29.07550803602268 21.468251977487075 22-23 21.870865468021474 27.55270701256867 28.86118645839758 21.715241061012275 24-25 21.791949012677176 27.76326741846925 29.050140416057168 21.3946431527964 26-27 21.79741395163112 27.86547241881164 29.015196493090034 21.321917136467206 28-29 21.277582543512228 27.54915551017543 29.188795404630348 21.98446654168199 30-31 21.878441226807563 27.373503398057974 29.33686387755607 21.41119149757839 32-33 21.502292466577742 27.91939715705951 29.013917791901832 21.56439258446092 34-35 21.565856861318576 27.9284551499466 29.371515403896648 21.134172584838183 36-37 21.91401190713321 27.63809839984065 28.92947347453688 21.518416218489257 38-39 21.548639994479622 27.5742674645989 29.14884433754893 21.72824820337255 40-41 21.686802710125452 27.493859069550723 29.18567750962734 21.633660710696486 42-43 21.897498716519582 27.437569941331 29.01179501801929 21.653136324130138 44-45 21.729763280238785 27.85276676776175 28.633929815735907 21.783540136263554 46-47 22.12990130241044 27.498181026372986 28.133962084786614 22.237955586429962 48-49 21.947449372873752 27.63724174470511 28.264923668418962 22.15038521400217 50-51 21.731661970556907 27.850215822112922 28.296719254275228 22.12140295305495 52-53 21.829645747369042 27.969394894800214 28.38853268376429 21.812426674066455 54-55 21.85699738865527 27.95650252318036 28.02598921570349 22.160510872460883 56-57 22.14246155413647 28.21064174350088 27.63836797341258 22.008528728950065 58-59 21.7380742285117 28.535711235374716 28.136240296848953 21.589974239264624 60-61 22.128854369666737 28.690852894419304 27.569361361326646 21.610931374587317 62-63 21.789010648953564 28.90516219866327 27.538824875478095 21.767002276905075 64-65 21.838180106802323 28.717730036354077 27.592941990924487 21.851147865919117 66-67 21.984800715046664 28.478033137730762 27.530164435923428 22.007001711299143 68-69 21.990219758846585 28.198471429426185 27.729570917660002 22.081737894067228 70-71 22.020287827120672 27.955295001119524 27.828012942225527 22.19640422953428 72-73 22.077457927926528 27.985753658348088 27.815556012982324 22.12123240074306 74-75 21.930349150626693 28.09226066832221 27.76945709137139 22.207933089679706 76-77 21.99318122185156 28.044999378191626 27.716934037066693 22.24488536289012 78-79 21.989118424372055 28.000987694939898 27.71475606081435 22.295137819873695 80-81 22.02705078157389 28.022682723784193 27.73838307789427 22.21188341674765 82-83 22.05396820724877 27.96921189715431 27.881354125462643 22.09546577013428 84-85 22.217864689254334 27.90513065989905 27.71736334951594 22.159641301330673 86-87 21.984404909360286 27.95269407695366 27.83864313519423 22.224257878491823 88-89 22.099261961175966 27.86235141141164 27.763614688883347 22.27477193852905 90-91 22.098814053797778 27.923728793549785 27.831910519003756 22.145546633648685 92-93 22.172558221396375 27.836943737962834 27.846169756583077 22.144328284057714 94-95 22.00496203166348 27.839136091649102 27.879073531943575 22.27682834474384 96-97 21.90247691763022 27.901470972993035 27.98773215771389 22.20831995166285 98-99 22.158314336027967 28.482562678140262 27.99933087989294 21.35979210593883 100-101 22.638646587685365 31.21882023781495 25.121905699757352 21.020627474742337 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1970.0 1 1928.0 2 3104.5 3 4541.5 4 6076.5 5 9060.5 6 11321.5 7 13302.5 8 14909.5 9 15150.5 10 14222.0 11 13186.5 12 14721.0 13 20406.5 14 34384.5 15 53486.0 16 68761.5 17 77066.0 18 77696.5 19 72401.5 20 64589.0 21 56945.0 22 52656.5 23 54608.5 24 63093.0 25 78521.0 26 99474.5 27 122671.5 28 148230.5 29 175220.5 30 201516.0 31 227926.0 32 257140.5 33 287731.5 34 316691.0 35 344016.5 36 371433.5 37 394265.5 38 408384.0 39 419757.0 40 433504.0 41 445422.0 42 451903.0 43 459152.5 44 469000.0 45 483919.5 46 508447.5 47 530023.0 48 522969.5 49 501727.5 50 482382.0 51 454638.5 52 421856.0 53 389222.5 54 359880.0 55 329523.5 56 298940.0 57 267364.5 58 232968.5 59 199886.0 60 167114.5 61 134377.0 62 103437.0 63 78286.5 64 58816.0 65 43639.5 66 32886.5 67 24906.5 68 18677.0 69 13114.0 70 8956.5 71 6480.5 72 4580.0 73 3090.5 74 2034.5 75 1305.0 76 854.5 77 538.0 78 339.0 79 223.0 80 161.5 81 117.5 82 90.5 83 63.5 84 40.5 85 28.5 86 21.5 87 17.0 88 14.5 89 11.5 90 9.0 91 7.0 92 5.5 93 4.0 94 1.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.7494597012395184E-5 2 8.747298506197592E-6 3 5.685744029028435E-4 4 1.312094775929639E-4 5 3.586392387541013E-4 6 2.186824626549398E-4 7 0.0027379044324398463 8 5.948162984214363E-4 9 4.461122238160772E-4 10-11 9.184663431507471E-5 12-13 3.498919402479037E-5 14-15 1.6182502236465547E-4 16-17 8.484879551011664E-4 18-19 2.186824626549398E-5 20-21 0.0 22-23 0.0029175717736872383 24-25 0.007118305582514747 26-27 0.036025490693575385 28-29 0.279819843146722 30-31 0.24381320431454442 32-33 0.2512214374689225 34-35 0.1308161665759935 36-37 0.022007859368141213 38-39 0.013879155995971218 40-41 0.007084799175743441 42-43 0.004148679462686871 44-45 0.0051751395226270905 46-47 9.759408933367037E-4 48-49 0.001632127713296075 50-51 0.0022473633946729042 52-53 0.0011778842719714917 54-55 7.15619390289417E-5 56-57 0.0013687574838863747 58-59 0.0025821945408802077 60-61 0.010822761928449671 62-63 0.0063560203243214165 64-65 0.0013658044005814597 66-67 0.0016692583561695022 68-69 0.002704565192277003 70-71 0.004173522514192722 72-73 0.003758299776896542 74-75 0.0038140094550042233 76-77 0.001727965616940154 78-79 7.646382761208218E-5 80-81 4.588042687370274E-4 82-83 1.678703718418267E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 5.017366877598737E-4 92-93 0.00782170823948583 94-95 0.0010863061045825945 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 200.0 20-21 847.0 22-23 1607.0 24-25 4284.0 26-27 6712.0 28-29 10022.0 30-31 22856.0 32-33 30187.0 34-35 43104.0 36-37 61131.0 38-39 74461.0 40-41 79083.0 42-43 94736.0 44-45 112693.0 46-47 112060.0 48-49 98276.0 50-51 88877.0 52-53 86587.0 54-55 100586.0 56-57 113346.0 58-59 111947.0 60-61 114245.0 62-63 114931.0 64-65 118241.0 66-67 133367.0 68-69 111348.0 70-71 102835.0 72-73 98501.0 74-75 100118.0 76-77 103080.0 78-79 109171.0 80-81 110139.0 82-83 108834.0 84-85 111389.0 86-87 116169.0 88-89 123020.0 90-91 133825.0 92-93 138461.0 94-95 154476.0 96-97 226510.0 98-99 952288.0 100-101 6897551.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.38300985486003 #Duplication Level Percentage of deduplicated Percentage of total 1 88.82658714438959 74.06628191234222 2 7.504718970516919 12.515321117531347 3 1.99933898105994 5.001327058827805 4 0.7601059468477716 2.535196866269818 5 0.34839974184089123 1.4525309553674863 6 0.18394811334628824 0.9202888408761878 7 0.11508765886704994 0.6717448775438797 8 0.071188117481674 0.4748703601218685 9 0.047881129109298495 0.35932253943442155 >10 0.1397894744683474 1.7323090414034454 >50 0.0023215534993519834 0.127474092687225 >100 5.617538831450381E-4 0.07903592647432484 >500 3.570772524931914E-5 0.021377850828988562 >1k 3.5706964436269344E-5 0.04291856029107335 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 8.747298506197592E-6 0.0 0.0 0.0 3 0.0 8.747298506197592E-6 0.0 8.747298506197592E-6 0.0 4 0.0 3.498919402479037E-5 0.0 8.747298506197592E-6 0.0 5 0.0 3.498919402479037E-5 0.0 8.747298506197592E-6 0.0 6 0.0 3.498919402479037E-5 0.0 8.747298506197592E-6 0.0 7 0.0 3.498919402479037E-5 0.0 8.747298506197592E-6 0.0 8 0.0 3.498919402479037E-5 0.0 8.747298506197592E-6 0.0 9 0.0 8.747298506197592E-5 0.0 1.7494597012395184E-5 0.0 10-11 8.747298506197592E-6 8.747298506197592E-5 0.0 3.498919402479037E-5 0.0 12-13 8.747298506197592E-6 8.747298506197592E-5 0.0 3.498919402479037E-5 0.0 14-15 8.747298506197592E-6 1.7494597012395185E-4 0.0 3.498919402479037E-5 4.373649253098796E-6 16-17 8.747298506197592E-6 1.9244056713634702E-4 0.0 3.498919402479037E-5 8.747298506197592E-6 18-19 8.747298506197592E-6 2.1430881340184102E-4 0.0 3.498919402479037E-5 8.747298506197592E-6 20-21 8.747298506197592E-6 2.536716566797302E-4 0.0 3.936284327788916E-5 8.747298506197592E-6 22-23 8.747298506197592E-6 3.017817984638169E-4 0.0 5.2483791037185555E-5 2.186824626549398E-5 24-25 8.747298506197592E-6 3.411446417417061E-4 0.0 6.997838804958074E-5 3.936284327788916E-5 26-27 8.747298506197592E-6 3.498919402479037E-4 0.0 1.093412313274699E-4 4.373649253098796E-5 28-29 8.747298506197592E-6 3.498919402479037E-4 0.0 3.280236939824097E-4 4.373649253098796E-5 30-31 8.747298506197592E-6 3.8488113427269404E-4 0.0 9.403345894162412E-4 4.811014178408676E-5 32-33 8.747298506197592E-6 3.9362843277889164E-4 0.0 0.002379265193685745 6.997838804958074E-5 34-35 8.747298506197592E-6 4.242439775505832E-4 0.0 0.004526726976957254 6.997838804958074E-5 36-37 8.747298506197592E-6 4.548595223222748E-4 0.0 0.00777634837200966 6.997838804958074E-5 38-39 8.747298506197592E-6 4.679804700815712E-4 0.0 0.01285852880411046 7.872568655577834E-5 40-41 8.747298506197592E-6 5.073433133594604E-4 0.0 0.018426184303305226 7.872568655577834E-5 42-43 8.747298506197592E-6 5.292115596249544E-4 0.0 0.023910740466691116 7.872568655577834E-5 44-45 1.7494597012395184E-5 5.773217014090411E-4 0.0 0.030331257570240147 7.872568655577834E-5 46-47 1.7494597012395184E-5 6.21058193940029E-4 0.0 0.03746467950204428 7.872568655577834E-5 48-49 1.7494597012395184E-5 6.298054924462267E-4 0.0 0.04449313385177405 7.872568655577834E-5 50-51 1.7494597012395184E-5 6.954102312427086E-4 0.0 0.05135101588063297 7.872568655577834E-5 52-53 1.7494597012395184E-5 7.129048282551037E-4 0.0 0.058077688431898915 9.622028356817352E-5 54-55 1.7494597012395184E-5 7.172784775082026E-4 0.0 0.06497055965478261 1.0496758207437111E-4 56-57 1.7494597012395184E-5 7.347730745205978E-4 0.0 0.07202525590003098 1.0496758207437111E-4 58-59 1.7494597012395184E-5 7.347730745205978E-4 0.0 0.07859885072743847 1.0496758207437111E-4 60-61 1.7494597012395184E-5 7.522676715329929E-4 0.0 0.08456888195791831 1.137148805805687E-4 62-63 1.7494597012395184E-5 7.785095670515857E-4 0.0 0.09018902124815029 1.3120947759296387E-4 64-65 1.7494597012395184E-5 8.572352536073641E-4 0.0 0.09579603959062294 1.3120947759296387E-4 66-67 1.7494597012395184E-5 8.572352536073641E-4 0.0 0.10171796067931871 1.3120947759296387E-4 68-69 1.7494597012395184E-5 8.922244476321544E-4 0.0 0.10781920138739151 1.3558312684606267E-4 70-71 1.7494597012395184E-5 9.140926938976484E-4 0.0 0.11368863868505011 1.4433042535226027E-4 72-73 1.7494597012395184E-5 9.184663431507471E-4 0.0 0.11840343257989061 1.6619867161775425E-4 74-75 1.7494597012395184E-5 9.272136416569448E-4 0.0 0.12237907975095741 1.6619867161775425E-4 76-77 2.6241895518592778E-5 9.66576484934834E-4 0.0 0.1256636903400346 1.7057232087085305E-4 78-79 2.6241895518592778E-5 9.796974326941304E-4 0.0 0.12881709145151884 1.7494597012395185E-4 80-81 2.6241895518592778E-5 9.88444731200328E-4 0.0 0.13021228556325737 1.7931961937705065E-4 82-83 2.6241895518592778E-5 9.88444731200328E-4 0.0 0.13063652954080796 1.8806691788324822E-4 84-85 2.6241895518592778E-5 9.88444731200328E-4 0.0 0.13088145389898148 1.9244056713634702E-4 86-87 2.6241895518592778E-5 9.88444731200328E-4 0.0 0.13099079513030895 1.9681421638944582E-4 88-89 2.6241895518592778E-5 0.0010146866267189208 0.0 0.13102578432433373 2.0118786564254462E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 13045 0.0 45.53529 1 GGTATCA 21405 0.0 39.159157 1 TATACAC 17930 0.0 35.627087 3 TTATACA 18210 0.0 33.68724 2 GTATCAA 35080 0.0 31.481312 1 ATCAACG 42140 0.0 25.635687 3 TCAACGC 42360 0.0 25.62212 4 CAACGCA 42860 0.0 25.29364 5 TATCAAC 43075 0.0 25.2852 2 TACACAT 25345 0.0 25.237158 5 ACACATC 24300 0.0 24.983625 6 ACATCTC 24365 0.0 24.864738 8 AACGCAG 43930 0.0 24.764011 6 CACATCT 26415 0.0 22.8073 7 ATACACA 30775 0.0 22.006062 4 CATCTCC 27380 0.0 21.84897 9 ACGCAGA 50005 0.0 21.730137 7 CGCAGAG 50250 0.0 21.59878 8 GTACATG 40990 0.0 20.469545 1 TACATGG 40500 0.0 20.247868 2 >>END_MODULE