##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139007_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 11464781 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60063127241593 34.0 31.0 34.0 31.0 34.0 2 32.728850904347844 34.0 31.0 34.0 31.0 34.0 3 33.37912795717598 34.0 31.0 34.0 31.0 37.0 4 36.17585412228982 37.0 35.0 37.0 35.0 37.0 5 36.12923631075029 37.0 35.0 37.0 35.0 37.0 6 36.155796695985735 37.0 36.0 37.0 35.0 37.0 7 36.16356474667942 37.0 36.0 37.0 35.0 37.0 8 36.44183294909863 37.0 37.0 37.0 35.0 39.0 9 37.78696767081726 39.0 38.0 39.0 35.0 39.0 10-11 37.748342292800885 39.0 38.0 39.0 35.0 39.0 12-13 37.87980555407033 39.0 38.0 39.0 35.0 40.0 14-15 39.03755972312075 40.0 38.0 41.0 36.0 41.0 16-17 38.992254016888765 40.0 38.0 41.0 35.0 41.0 18-19 38.948829768313935 40.0 38.5 41.0 35.0 41.0 20-21 38.99194108738099 40.0 38.5 41.0 35.0 41.0 22-23 38.922968317438404 40.0 38.0 41.0 35.0 41.0 24-25 38.83571232706278 40.0 38.0 41.0 35.0 41.0 26-27 38.75380425612356 40.0 38.0 41.0 35.0 41.0 28-29 38.53835964186735 40.0 38.0 41.0 34.0 41.0 30-31 38.476030820431376 40.0 38.0 41.0 34.0 41.0 32-33 38.38444067999282 40.0 38.0 41.0 34.0 41.0 34-35 38.22557233530003 40.0 38.0 41.0 34.0 41.0 36-37 38.369611715493726 40.0 38.0 41.0 34.0 41.0 38-39 38.461813014173515 40.0 38.0 41.0 34.0 41.0 40-41 38.448861955407665 40.0 38.0 41.0 34.0 41.0 42-43 38.337130343840016 40.0 38.0 41.0 34.0 41.0 44-45 38.28841159004295 40.0 38.0 41.0 33.0 41.0 46-47 38.28516847382147 40.0 38.0 41.0 33.0 41.0 48-49 38.17834940020957 40.0 38.0 41.0 33.0 41.0 50-51 38.097662698235666 40.0 37.0 41.0 33.0 41.0 52-53 38.027843448074584 40.0 37.0 41.0 33.0 41.0 54-55 37.91209644927379 40.0 37.0 41.0 33.0 41.0 56-57 37.75419848894244 40.0 36.5 41.0 33.0 41.0 58-59 37.60179217778254 39.0 36.0 41.0 33.0 41.0 60-61 37.41381525377018 39.0 36.0 41.0 32.0 41.0 62-63 37.1970676518212 39.0 35.0 40.5 32.0 41.0 64-65 36.958862466940175 38.5 35.0 40.0 32.0 41.0 66-67 36.68413021702109 38.0 35.0 40.0 31.0 41.0 68-69 36.3791024664789 37.0 35.0 40.0 31.0 41.0 70-71 36.079631591228846 37.0 35.0 39.5 31.0 41.0 72-73 35.74983474305132 36.0 34.5 39.0 31.0 40.5 74-75 35.32406324988701 36.0 34.0 38.5 30.5 40.0 76-77 34.51064847296871 35.0 33.5 37.0 29.5 39.0 78-79 34.753624496132105 35.0 34.0 37.0 30.0 39.0 80-81 34.58361316231904 35.0 34.0 37.0 30.0 39.0 82-83 34.32088498787563 35.0 34.0 36.0 30.0 38.5 84-85 34.055720616533854 35.0 34.0 36.0 30.0 37.0 86-87 33.80731565486073 35.0 34.0 35.5 30.0 37.0 88-89 33.58278555748068 35.0 33.0 35.0 29.5 36.5 90-91 33.4688300576676 35.0 33.0 35.0 29.0 36.0 92-93 33.39157466082558 35.0 33.0 35.0 29.5 36.0 94-95 33.31527678124672 35.0 33.0 35.0 29.0 36.0 96-97 33.31023780828112 35.0 33.0 35.0 30.0 35.0 98-99 33.31389801203962 34.0 33.0 35.0 30.0 35.0 100-101 31.88798451585415 33.0 30.5 34.5 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 5.0 19 7.0 20 80.0 21 439.0 22 1713.0 23 5832.0 24 14445.0 25 29265.0 26 51403.0 27 79597.0 28 113472.0 29 151179.0 30 193265.0 31 242264.0 32 306130.0 33 396285.0 34 547932.0 35 780032.0 36 1282739.0 37 2449572.0 38 3216916.0 39 1515001.0 40 87208.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.66174690327655 0.02106451419604338 26.593604639042756 30.723583943484652 2 14.029476933710175 25.194009713765514 38.041796074074284 22.734717278450027 3 15.509685970689574 25.318459420661256 34.004214317899965 25.167640290749212 4 12.597020205672152 24.533354453140763 37.43540526959547 25.43422007159161 5 16.86982881591496 36.8585176071246 32.55750198827116 13.71415158868928 6 27.15999869512572 38.08383747476822 20.641785319222315 14.114378510883752 7 25.35570724334388 33.38206935436431 22.968892450807207 18.293330951484602 8 23.859016058844926 32.452273105904986 22.371896018303122 21.31681481694696 9 23.451964593007375 20.79622208648237 24.15964739194719 31.59216592856306 10-11 24.340657550656577 26.372023278783196 28.908545039416172 20.378774131144052 12-13 24.649999795024396 24.486808685976417 28.82359093009992 22.039600588899273 14-15 22.04914694689231 26.855003780715535 26.92779204032252 24.168057232069643 16-17 21.172416695577994 29.21739232828906 27.840368471700298 21.769822504432646 18-19 21.321495624641564 28.27720125340445 29.576869149198302 20.824433972755678 20-21 22.07690837582232 27.487257664918086 29.46189764210649 20.973936317153107 22-23 21.86310568065931 27.326290049751677 29.21811002946018 21.592494240128833 24-25 21.65716518287251 27.580018068032985 29.44272108905278 21.320095660041723 26-27 21.580942035582 27.82773255997821 29.239036938039277 21.352288466400516 28-29 21.403426706339847 27.682559371255866 29.22899873836834 21.685015184035947 30-31 21.763736131237245 27.583440571214357 29.409520093127057 21.243303204421345 32-33 21.538166828030036 27.875877810215492 29.142097223997776 21.443858137756695 34-35 21.64451614792078 27.727782727019978 29.2467150643119 21.380986060747343 36-37 21.738691988844742 27.77400465139649 29.1894948914314 21.29780846832737 38-39 21.574658500360634 27.87297419085 29.152001838023473 21.400365470765895 40-41 21.78306755970116 27.624631546288636 28.94107954196042 21.651221352049784 42-43 21.761382607521348 27.719086717553882 28.912207497540898 21.607323177383876 44-45 21.773528749986067 28.098113896078754 28.53316704065078 21.5951903132844 46-47 21.845782254717363 27.771467178478034 28.306278975810883 22.076471590993723 48-49 21.80490839500138 28.003331597391185 28.332813912697212 21.858946094910223 50-51 21.83582916788381 28.234023345504433 28.017120798567124 21.913026688044635 52-53 21.905019452318193 28.037974537079123 28.093004074839982 21.9640019357627 54-55 21.836420418217948 28.0506919300819 28.14456058302387 21.968327068676277 56-57 21.936078352169677 28.402320249805022 27.752842947192512 21.90875845083278 58-59 21.88800130751293 28.296930440642143 28.011751505381987 21.803316746462936 60-61 22.051536155002474 28.350878716475187 27.828864077130362 21.768721051391978 62-63 21.87690199572112 28.55429125862312 27.75714289390152 21.811663851754233 64-65 21.933554816611768 28.24851634983086 27.783385476436873 22.0345433571205 66-67 21.910818092601815 28.301544912264383 27.788114428720718 21.999522566413088 68-69 21.972487604613995 28.28115952389463 27.816349143939668 21.930003727551714 70-71 22.011315234607718 27.876235886085038 27.89537864653716 22.217070232770084 72-73 21.976265592900745 28.057511224781724 27.84942162219047 22.116801560127065 74-75 21.87585645063933 28.224455474578715 27.81780131583489 22.08188675894707 76-77 22.03214354016073 27.985519062429752 27.729583077900628 22.25275431950889 78-79 21.838231943936847 28.067918007824034 27.879690119269164 22.214159928969956 80-81 21.959022744083747 28.16364593256694 27.765483603179717 22.111847720169596 82-83 22.033716017976523 27.89996185581498 27.901467547328902 22.164854578879595 84-85 22.075345586965692 28.02529796570901 27.831826317760083 22.06753012956521 86-87 21.937560428027457 28.114507599840298 27.791335314820483 22.15659665731176 88-89 22.028964911411105 27.89128946775034 27.865187983690443 22.214557637148115 90-91 22.036900390460325 27.974287184586267 27.887036891668338 22.10177553328507 92-93 22.055819159980565 27.975822231673586 27.858341787873016 22.110016820472833 94-95 22.013258280685836 27.876905131851686 27.923879647876237 22.18595693958624 96-97 21.78536038004857 28.023771894685222 28.102783841141637 22.088083884124575 98-99 22.22823627458163 28.96335143004553 27.942988861923073 20.86542343344977 100-101 22.583443559941184 31.0468524985359 24.825147015550467 21.54455692597245 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2300.0 1 2127.5 2 3232.5 3 4799.0 4 6454.5 5 9603.0 6 11964.0 7 14345.5 8 16414.5 9 16687.0 10 15488.5 11 13961.0 12 15110.5 13 19833.5 14 32536.0 15 52233.0 16 69391.5 17 78527.5 18 78755.5 19 73230.5 20 65625.0 21 58549.0 22 54874.0 23 57503.5 24 66685.5 25 81619.0 26 102341.5 27 126970.5 28 153584.5 29 183451.5 30 212697.0 31 239526.5 32 268376.0 33 297532.5 34 326063.5 35 352047.5 36 378078.5 37 400567.0 38 415084.5 39 425947.0 40 435433.0 41 445080.0 42 451797.5 43 457268.0 44 464093.0 45 469956.5 46 476910.5 47 480335.5 48 476669.5 49 468308.0 50 456645.0 51 439113.0 52 415070.5 53 388386.5 54 362566.5 55 336644.0 56 307449.5 57 274250.5 58 239436.5 59 208190.0 60 176123.5 61 142561.0 62 112202.5 63 85941.5 64 63372.0 65 47374.5 66 36440.0 67 27844.5 68 21083.0 69 14843.0 70 10314.5 71 7591.0 72 5387.0 73 3661.5 74 2447.5 75 1589.5 76 1071.5 77 693.5 78 462.0 79 313.0 80 208.0 81 147.5 82 106.5 83 70.5 84 48.5 85 34.0 86 22.5 87 15.5 88 11.5 89 10.5 90 10.0 91 8.5 92 6.5 93 4.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.744472921026577E-5 2 1.744472921026577E-4 3 4.797300532823087E-4 4 2.6167093815398655E-4 5 4.0995113644124554E-4 6 6.541773453849664E-4 7 0.002590542287724467 8 6.192878869644348E-4 9 3.488945842053154E-4 10-11 5.669536993336375E-5 12-13 1.744472921026577E-5 14-15 1.744472921026577E-4 16-17 0.0011208238517595756 18-19 5.233418763079731E-5 20-21 1.8753765199981212E-4 22-23 0.003245138268188346 24-25 0.010981512011535955 26-27 0.07190865043517523 28-29 0.2737372738047581 30-31 0.24665908500658634 32-33 0.24559551838921814 34-35 0.10816891220361792 36-37 0.02380855395529046 38-39 0.015126373225101457 40-41 0.008771671510926683 42-43 0.006014660893734423 44-45 0.006692817337590893 46-47 0.0014021654675700046 48-49 0.0018711793755730487 50-51 0.0027543016758520443 52-53 0.001426251577082404 54-55 2.0002412671966575E-4 56-57 0.0016678127472129862 58-59 0.0034889734125183106 60-61 0.012886984380974931 62-63 0.008060100941755256 64-65 0.0021134598161589744 66-67 0.0019846379929401425 68-69 0.0025632643774366965 70-71 0.004180368771489224 72-73 0.003926655089031038 74-75 0.003372335624326027 76-77 0.0012887968458348137 78-79 1.4541189129976419E-4 80-81 4.522879531032975E-4 82-83 2.7576760049481534E-5 84-85 1.1164937896986812E-5 86-87 1.1306845164062323E-5 88-89 5.730289594510382E-5 90-91 0.0013838908591566593 92-93 0.007341988649982534 94-95 9.1351857847374E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 242.0 20-21 865.0 22-23 1861.0 24-25 5465.0 26-27 6852.0 28-29 12085.0 30-31 24530.0 32-33 33054.0 34-35 47288.0 36-37 64919.0 38-39 76053.0 40-41 79740.0 42-43 95213.0 44-45 112286.0 46-47 110526.0 48-49 97549.0 50-51 87625.0 52-53 87091.0 54-55 93463.0 56-57 99417.0 58-59 98869.0 60-61 99456.0 62-63 98140.0 64-65 102580.0 66-67 110864.0 68-69 105074.0 70-71 100739.0 72-73 98987.0 74-75 100276.0 76-77 102937.0 78-79 107447.0 80-81 110170.0 82-83 109260.0 84-85 111216.0 86-87 116266.0 88-89 124835.0 90-91 132514.0 92-93 140792.0 94-95 163265.0 96-97 292147.0 98-99 1139148.0 100-101 6763675.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.5196582121971 #Duplication Level Percentage of deduplicated Percentage of total 1 87.87841047027676 70.75939575297848 2 7.641378539556206 12.305623765501672 3 2.258656208575323 5.455986778000258 4 0.958462228785679 3.087002042844941 5 0.4457592022117424 1.7946189303515574 6 0.25609148516238384 1.2372239313797455 7 0.14638831912740896 0.8250996195677901 8 0.10490073432744644 0.6757257019403583 9 0.06655692374077844 0.4823226676136471 >10 0.23814292412522303 2.9500318044056133 >50 0.00417622069624593 0.21614322333485375 >100 0.0010117988329517694 0.17094362116171474 >500 4.32966318005734E-5 0.021527470149427838 >1k 2.164795010196227E-5 0.018354690769945482 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.722364605132885E-6 8.722364605132885E-6 2 0.0 1.3083546907699328E-4 0.0 8.722364605132885E-6 8.722364605132885E-6 3 0.0 1.3083546907699328E-4 0.0 8.722364605132885E-6 8.722364605132885E-6 4 0.0 1.3083546907699328E-4 0.0 8.722364605132885E-6 8.722364605132885E-6 5 0.0 1.3083546907699328E-4 0.0 8.722364605132885E-6 8.722364605132885E-6 6 0.0 1.3083546907699328E-4 0.0 8.722364605132885E-6 1.744472921026577E-5 7 0.0 1.3083546907699328E-4 0.0 8.722364605132885E-6 1.744472921026577E-5 8 0.0 1.4828019828725905E-4 0.0 2.6167093815398655E-5 1.744472921026577E-5 9 0.0 2.6167093815398655E-4 0.0 3.488945842053154E-5 1.744472921026577E-5 10-11 0.0 2.6167093815398655E-4 0.0 3.488945842053154E-5 1.744472921026577E-5 12-13 0.0 2.6167093815398655E-4 0.0 3.488945842053154E-5 1.744472921026577E-5 14-15 0.0 3.7506167802071406E-4 0.0 3.925064072309798E-5 2.1805911512832213E-5 16-17 0.0 4.2739586565151137E-4 0.0 4.3611823025664425E-5 2.6167093815398655E-5 18-19 0.0 4.2739586565151137E-4 0.0 5.669536993336375E-5 2.6167093815398655E-5 20-21 0.0 4.2739586565151137E-4 0.0 6.10565522359302E-5 2.6167093815398655E-5 22-23 0.0 5.233418763079731E-4 0.0 6.977891684106308E-5 3.488945842053154E-5 24-25 0.0 5.538701524259381E-4 0.0 6.977891684106308E-5 4.3611823025664425E-5 26-27 0.0 5.669536993336375E-4 0.0 1.1775192216929395E-4 4.3611823025664425E-5 28-29 0.0 5.71314881636204E-4 0.0 3.7506167802071406E-4 4.3611823025664425E-5 30-31 0.0 7.021503507131972E-4 0.0 0.001273465232349401 4.797300532823087E-5 32-33 0.0 7.065115330157636E-4 0.0 0.002808601402852789 5.233418763079731E-5 34-35 0.0 8.547917313030226E-4 0.0 0.0047013545221666255 5.233418763079731E-5 36-37 0.0 9.943495649851488E-4 0.0 0.008216467458035177 5.233418763079731E-5 38-39 0.0 0.0010641284818262119 0.0 0.01312715873072499 5.233418763079731E-5 40-41 0.0 0.001142629763272408 0.0 0.018526302421302245 6.10565522359302E-5 42-43 0.0 0.0012865487792571005 0.0 0.02406064276325906 6.10565522359302E-5 44-45 0.0 0.0014304677952417931 0.0 0.030092157887708453 6.10565522359302E-5 46-47 0.0 0.0014304677952417931 0.0 0.03717471794707636 6.10565522359302E-5 48-49 0.0 0.0014304677952417931 0.0 0.043943272880659474 6.977891684106308E-5 50-51 0.0 0.0016528880926726817 0.0 0.050437073329180904 6.977891684106308E-5 52-53 0.0 0.001665971639580381 0.0 0.05695704087151774 7.414009914362952E-5 54-55 0.0 0.0016703328218829476 0.0 0.0640439621131882 7.850128144619597E-5 56-57 0.0 0.0017008610980009126 0.0 0.07082123941137647 7.850128144619597E-5 58-59 0.0 0.001713944644908612 0.0 0.07663469542069752 8.722364605132885E-5 60-61 0.0 0.001744472921026577 0.0 0.08303691104086507 9.594601065646174E-5 62-63 0.0 0.0017880847440522414 0.0 0.0888547282324887 9.594601065646174E-5 64-65 0.0 0.0020061438591805637 0.0 0.09464637833029693 9.594601065646174E-5 66-67 0.0 0.002041033317601095 0.0 0.10047727906882828 9.594601065646174E-5 68-69 0.0 0.0020715615937190604 0.0 0.10669632503228801 9.594601065646174E-5 70-71 0.0 0.0020933675052318924 0.0 0.11233097256720387 9.594601065646174E-5 72-73 0.0 0.0021151734167447244 0.0 0.11660057004141641 1.221131044718604E-4 74-75 0.0 0.0021544240574678224 0.0 0.12026396317557221 1.221131044718604E-4 76-77 0.0 0.002228564156611452 0.0 0.12356537817861502 1.221131044718604E-4 78-79 0.0 0.0022503700681242842 0.0 0.12641323022219092 1.221131044718604E-4 80-81 0.0 0.0022590924327294173 0.0 0.1275427764385556 1.221131044718604E-4 82-83 0.0 0.002276537161939683 0.0 0.1280225064918379 1.221131044718604E-4 84-85 0.0 0.0022983430734525153 0.0 0.12835395634683297 1.221131044718604E-4 86-87 0.0 0.0023288713495704804 0.0 0.12844990235748943 1.221131044718604E-4 88-89 0.0 0.002503318641673138 0.0 0.12847170826900225 1.221131044718604E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16260 0.0 50.10487 1 GTATCAA 29375 0.0 36.364803 1 ATCAACG 34950 0.0 29.946674 3 TCAACGC 36730 0.0 28.564665 4 CAACGCA 37125 0.0 28.249344 5 AACGCAG 37585 0.0 27.959784 6 TATCAAC 37950 0.0 27.802511 2 ACGCAGA 38900 0.0 27.003614 7 CTTATAC 8955 0.0 25.33197 1 CGCAGAG 44590 0.0 23.538267 8 TATACAC 12775 0.0 20.606354 3 GTACATG 36510 0.0 20.575779 1 TACATGG 36190 0.0 20.278418 2 GCAGAGT 51535 0.0 20.218277 9 ACATGGG 35485 0.0 20.013306 3 GAGTACT 30225 0.0 19.008137 12-13 AGAGTAC 47165 0.0 18.565336 10-11 CAGAGTA 50330 0.0 18.188286 10-11 GTGGTAT 8500 0.0 17.675804 1 CATGGGG 27180 0.0 17.502111 4 >>END_MODULE