##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139005_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10519333 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.18154753728207 33.0 33.0 34.0 30.0 34.0 2 31.264249453838946 33.0 32.0 33.0 27.0 34.0 3 32.50105705371244 33.0 33.0 33.0 31.0 34.0 4 32.92072586731497 33.0 33.0 34.0 32.0 34.0 5 33.15594049546677 34.0 33.0 34.0 33.0 34.0 6 37.079363967278155 38.0 37.0 38.0 36.0 38.0 7 37.14108993412415 38.0 38.0 38.0 36.0 38.0 8 37.349403331941296 38.0 38.0 38.0 37.0 38.0 9 37.33426415914393 38.0 38.0 38.0 37.0 38.0 10-11 37.39181604955371 38.0 38.0 38.0 37.0 38.0 12-13 37.39903414028247 38.0 38.0 38.0 37.0 38.0 14-15 37.406015523988074 38.0 38.0 38.0 37.0 38.0 16-17 37.36747729157352 38.0 38.0 38.0 37.0 38.0 18-19 37.348742928853 38.0 38.0 38.0 37.0 38.0 20-21 37.40624515240851 38.0 38.0 38.0 37.0 38.0 22-23 37.42238122482155 38.0 38.0 38.0 37.0 38.0 24-25 37.42550329226849 38.0 38.0 38.0 37.0 38.0 26-27 37.32676567946277 38.0 38.0 38.0 37.0 38.0 28-29 37.228730516836656 38.0 38.0 38.0 37.0 38.0 30-31 37.31404205568268 38.0 38.0 38.0 37.0 38.0 32-33 37.33496725054077 38.0 38.0 38.0 37.0 38.0 34-35 37.2920100082136 38.0 38.0 38.0 37.0 38.0 36-37 37.2956119389306 38.0 38.0 38.0 37.0 38.0 38-39 37.29367384397467 38.0 38.0 38.0 37.0 38.0 40-41 37.254107569284386 38.0 38.0 38.0 37.0 38.0 42-43 37.25361958715031 38.0 38.0 38.0 37.0 38.0 44-45 37.18948998946128 38.0 38.0 38.0 37.0 38.0 46-47 37.16817606554095 38.0 38.0 38.0 37.0 38.0 48-49 37.14787313487501 38.0 38.0 38.0 37.0 38.0 50-51 37.14973898015183 38.0 38.0 38.0 37.0 38.0 52-53 37.13784188236984 38.0 38.0 38.0 36.5 38.0 54-55 37.093668920097755 38.0 38.0 38.0 36.0 38.0 56-57 37.10058343363713 38.0 38.0 38.0 36.0 38.0 58-59 37.11812863922923 38.0 38.0 38.0 36.0 38.0 60-61 37.1344855750972 38.0 38.0 38.0 36.0 38.0 62-63 37.06992270475851 38.0 38.0 38.0 36.0 38.0 64-65 37.10570374620081 38.0 38.0 38.0 36.0 38.0 66-67 37.13364718928423 38.0 38.0 38.0 36.0 38.0 68-69 37.109515768728166 38.0 38.0 38.0 36.0 38.0 70-71 37.067031727173664 38.0 38.0 38.0 36.0 38.0 72-73 37.08473092118125 38.0 38.0 38.0 36.0 38.0 74-75 37.11050786567503 38.0 38.0 38.0 36.0 38.0 76-77 37.05665437355866 38.0 38.0 38.0 36.0 38.0 78-79 37.086864334648965 38.0 38.0 38.0 36.0 38.0 80-81 37.06895021094756 38.0 38.0 38.0 36.0 38.0 82-83 37.020517923125894 38.0 38.0 38.0 36.0 38.0 84-85 37.056381233561 38.0 38.0 38.0 36.0 38.0 86-87 37.08541770491953 38.0 38.0 38.0 36.0 38.0 88-89 37.001208291401305 38.0 38.0 38.0 36.0 38.0 90-91 36.967618323126345 38.0 38.0 38.0 36.0 38.0 92-93 37.026834031879105 38.0 38.0 38.0 36.0 38.0 94-95 37.01638099599232 38.0 38.0 38.0 36.0 38.0 96-97 36.96999825570077 38.0 38.0 38.0 36.0 38.0 98-99 36.98385243934611 38.0 38.0 38.0 36.0 38.0 100 35.524268306075726 38.0 36.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 9.0 19 30.0 20 70.0 21 230.0 22 670.0 23 1905.0 24 4320.0 25 8821.0 26 15487.0 27 25014.0 28 39240.0 29 57396.0 30 78985.0 31 104514.0 32 136228.0 33 181095.0 34 265336.0 35 478262.0 36 1350081.0 37 7771637.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.77067433838248 21.003556023941822 14.399059331993769 23.826710305681928 2 14.424647750553483 21.17662347218038 42.35428313291323 22.0444456443529 3 17.515207475607056 26.93517735392539 30.82643167584865 24.723183494618908 4 12.110621514986509 18.605019255982892 40.117163377736674 29.167195851293926 5 12.94546259320126 37.82424189590739 36.24665451789931 12.98364099299204 6 28.77409170166112 38.831266684830126 19.514851103012123 12.879790510496624 7 25.624700372828173 33.171992151966435 24.01875101658158 17.184556458623813 8 23.645253933875846 37.110185598269396 21.841812594011426 17.40274787384333 9 25.301290490566274 17.182990594555758 21.93572539247498 35.57999352240299 10-11 23.466649453914997 27.15575217554193 29.67128714339588 19.706311227147197 12-13 24.561975554913985 24.790350300727244 29.632629749433733 21.015044394925038 14-15 21.734372321895314 26.120719821304263 27.372861948566513 24.772045908233917 16-17 21.198059800939852 29.200539615962345 28.009161797615878 21.592238785481932 18-19 21.149216399937142 28.421583383661304 29.769311419269645 20.65988879713191 20-21 22.019367464729747 27.533387751082195 29.638677777038918 20.80856700714914 22-23 21.766970614374344 27.452831762655077 29.411440921090225 21.36875670188035 24-25 21.527898564175807 27.55237259926091 29.542175567919752 21.37755326864353 26-27 21.523995588532905 27.73576112663458 29.366191749544896 21.374051535287624 28-29 21.424809104242033 27.7859373113552 29.419637238026386 21.36961634637638 30-31 21.7296766317101 27.6324691967152 29.365626084159857 21.27222808741485 32-33 21.546228040529915 27.702470874627515 29.340085078739865 21.411216006102705 34-35 21.6354733016726 27.745215306150072 29.336778092948446 21.28253329922888 36-37 21.623108029465033 27.67943931986916 29.3235242978198 21.373928352846008 38-39 21.49498499791868 27.81870915969828 29.366776780524734 21.319529061858304 40-41 21.77547538286004 27.667961973237592 29.20184280090891 21.354719842993454 42-43 21.625241573848307 27.72843468404193 29.077779917814496 21.568543824295265 44-45 21.74251003867191 27.82128063069881 28.95782792575427 21.47838140487501 46-47 21.738126337227836 27.81169587597938 28.76917180310966 21.681005983683118 48-49 21.71033090117539 27.932256291468725 28.766017919368792 21.591394887987093 50-51 21.6864138614559 28.026721961007667 28.627431157437677 21.659433020098756 52-53 21.77211242995722 27.996736357976342 28.509750758169144 21.721400453897292 54-55 21.818248237289254 27.924845778599046 28.526179389759616 21.73072659435209 56-57 21.839368846935734 27.978318891504006 28.488267215506035 21.69404504605422 58-59 21.768178093671786 28.04942337719717 28.542862040562223 21.63953648856883 60-61 21.867445223298027 27.995601735634533 28.553758447638867 21.583194593428576 62-63 21.865181705454372 27.99216378229106 28.48053240643446 21.66212210582011 64-65 21.828770385922965 27.980885306396836 28.47895439396641 21.711389913713788 66-67 21.866375724499772 27.989552020058774 28.37920821414299 21.764864041298466 68-69 21.845145896580462 27.957840036512604 28.41037378391619 21.78664028299075 70-71 21.852113326046936 27.801402414732344 28.47651652518401 21.86996773403671 72-73 21.9082717822487 27.86112457736524 28.40724889584365 21.823354744542414 74-75 21.83990500947283 27.96468083842285 28.352021644469094 21.843392507635226 76-77 21.925231939070073 27.889528316518653 28.28799997894006 21.897239765471216 78-79 21.832536082560885 27.904569696389192 28.295548671819553 21.96734554923037 80-81 21.859730338091413 27.92614718311446 28.306897991156436 21.907224487637688 82-83 21.950027923646264 27.944836510538757 28.289843173062255 21.81529239275272 84-85 22.042335492019472 27.90433733357095 28.22215640301005 21.831170771399528 86-87 21.876163417766996 27.93135519877617 28.291094196250878 21.901387187205955 88-89 21.946128387172536 27.898780896313717 28.21566187436651 21.939428842147237 90-91 21.97527982521305 27.991967422425944 28.185764246806666 21.84698850555434 92-93 22.02422921419216 27.94821648184672 28.19591133626854 21.83164296769258 94-95 21.93324549080042 28.035001943846886 28.18534667623546 21.84640588911723 96-97 21.998849592668403 28.14268806950791 28.218838148788024 21.639624189035665 98-99 23.06329736457786 29.9976941524602 28.505941240410987 18.433067242550955 100 21.93892615916814 30.94435196965824 22.445716251979817 24.6710056191938 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1410.0 1 1394.5 2 2140.0 3 3257.0 4 4400.0 5 6087.0 6 7418.0 7 9190.5 8 11537.5 9 12950.5 10 13185.0 11 13482.0 12 15050.5 13 18464.0 14 24680.0 15 31549.0 16 36492.0 17 38994.0 18 38422.5 19 35598.5 20 32727.5 21 31129.0 22 32723.5 23 38944.5 24 49752.5 25 65337.5 26 85062.5 27 108407.0 28 134103.0 29 161932.5 30 189135.0 31 215823.5 32 244586.5 33 272214.5 34 299506.0 35 324824.5 36 348580.5 37 370734.0 38 386382.0 39 398936.0 40 412139.0 41 423125.0 42 428800.0 43 433685.5 44 438659.5 45 442422.5 46 442655.5 47 437506.5 48 429600.5 49 417708.5 50 403245.0 51 385361.5 52 361507.5 53 335329.5 54 310289.0 55 283119.5 56 255798.5 57 227608.0 58 198205.5 59 169974.0 60 140055.5 61 112095.5 62 87636.5 63 66156.5 64 49085.5 65 36168.5 66 26224.0 67 19283.0 68 14260.0 69 10217.0 70 7269.5 71 5182.0 72 3632.0 73 2432.0 74 1622.5 75 1040.0 76 623.0 77 380.5 78 238.5 79 135.5 80 72.5 81 48.5 82 34.5 83 25.5 84 24.5 85 20.0 86 13.5 87 11.5 88 8.5 89 5.5 90 3.5 91 2.5 92 1.5 93 1.0 94 1.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 1.1407567380935656E-4 3 0.0 4 4.7531530753898564E-5 5 0.002813866620630795 6 4.4679638908664643E-4 7 9.506306150779713E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0011221973537159876 30-31 0.0 32-33 0.0 34-35 4.774750204168319E-6 36-37 0.0 38-39 0.0 40-41 0.0 42-43 4.857586257616452E-6 44-45 4.88719809211606E-6 46-47 1.476613833095582E-5 48-49 7.931374574630468E-5 50-51 4.1915686596411314E-4 52-53 1.907971696545336E-4 54-55 2.7284123217121494E-4 56-57 4.1714222576103526E-4 58-59 3.6374037195885514E-4 60-61 5.1593727667977434E-5 62-63 3.3770416034900114E-4 64-65 1.098772937473698E-4 66-67 1.4234284835525738E-4 68-69 4.5167617560149453E-4 70-71 1.2320758410176475E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 9.694338096850246E-4 90-91 0.0 92-93 5.877624219620486E-6 94-95 7.121400109990025E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 53.0 20-21 213.0 22-23 475.0 24-25 698.0 26-27 1852.0 28-29 4771.0 30-31 14580.0 32-33 19052.0 34-35 26520.0 36-37 42329.0 38-39 50769.0 40-41 50928.0 42-43 59187.0 44-45 70965.0 46-47 73003.0 48-49 67893.0 50-51 62858.0 52-53 61291.0 54-55 65985.0 56-57 68854.0 58-59 68747.0 60-61 67731.0 62-63 67071.0 64-65 71023.0 66-67 74137.0 68-69 75628.0 70-71 74066.0 72-73 71023.0 74-75 72332.0 76-77 74877.0 78-79 76803.0 80-81 76583.0 82-83 73492.0 84-85 72987.0 86-87 76081.0 88-89 79041.0 90-91 78953.0 92-93 79465.0 94-95 95322.0 96-97 317332.0 98-99 722460.0 100-101 7311903.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.25636756417207 #Duplication Level Percentage of deduplicated Percentage of total 1 88.49113649817485 73.67450586463367 2 7.734602964474678 12.879098947464772 3 2.071629046876329 5.174289281500533 4 0.8004674937319856 2.6657606352528713 5 0.3612758290868411 1.503925660925252 6 0.1876150382455866 0.9372087950844453 7 0.11186942433701041 0.6519689338256133 8 0.06635007358350063 0.4419252891342233 9 0.04235775425349884 0.31738974815899546 >10 0.1306358323156965 1.5682755616793886 >50 0.0015601817756196361 0.08557150335243303 >100 4.4290741028350686E-4 0.061765194789955236 >500 5.695573418359226E-5 0.038314584197865695 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.506306150779712E-6 0.0 0.0 0.0 3 0.0 9.506306150779712E-6 0.0 0.0 0.0 4 0.0 3.802522460311885E-5 0.0 0.0 0.0 5 0.0 3.802522460311885E-5 0.0 0.0 0.0 6 6.654414305545799E-5 3.802522460311885E-5 0.0 0.0 0.0 7 6.654414305545799E-5 4.753153075389856E-5 0.0 0.0 0.0 8 6.654414305545799E-5 5.703783690467827E-5 0.0 0.0 0.0 9 6.654414305545799E-5 5.703783690467827E-5 0.0 0.0 0.0 10-11 6.654414305545799E-5 5.703783690467827E-5 0.0 0.0 0.0 12-13 7.129729613084785E-5 5.703783690467827E-5 0.0 4.753153075389856E-6 0.0 14-15 7.60504492062377E-5 7.129729613084785E-5 0.0 9.506306150779712E-6 0.0 16-17 9.506306150779711E-5 8.55567553570174E-5 0.0 9.506306150779712E-6 0.0 18-19 1.0456936765857684E-4 9.030990843240727E-5 0.0 1.4259459226169568E-5 0.0 20-21 1.0456936765857684E-4 1.0456936765857684E-4 0.0 3.802522460311885E-5 0.0 22-23 1.0456936765857684E-4 1.0456936765857684E-4 0.0 5.228468382928842E-5 9.506306150779712E-6 24-25 1.0932252073396668E-4 1.0456936765857684E-4 0.0 8.080360228162754E-5 9.506306150779712E-6 26-27 1.1407567380935654E-4 1.0456936765857684E-4 0.0 1.3308828611091598E-4 9.506306150779712E-6 28-29 1.1407567380935654E-4 1.0456936765857684E-4 0.0 3.279675622019001E-4 9.506306150779712E-6 30-31 1.1407567380935654E-4 1.1407567380935654E-4 0.0 0.0010314342173595988 9.506306150779712E-6 32-33 1.188288268847464E-4 1.1407567380935654E-4 0.0 0.0025476900484089626 9.506306150779712E-6 34-35 1.3308828611091598E-4 1.3308828611091598E-4 0.0 0.0042873440740016505 9.506306150779712E-6 36-37 1.3308828611091598E-4 1.521008984124754E-4 0.0 0.007191520603064851 9.506306150779712E-6 38-39 1.3308828611091598E-4 1.521008984124754E-4 0.0 0.011764053861589893 9.506306150779712E-6 40-41 1.3308828611091598E-4 1.8061981686481453E-4 0.0 0.016464922253150462 9.506306150779712E-6 42-43 1.8061981686481453E-4 1.9012612301559423E-4 0.0 0.020994677133996994 9.506306150779712E-6 44-45 1.9012612301559423E-4 2.2339819454332324E-4 0.0 0.02610431669004109 9.506306150779712E-6 46-47 1.9963242916637395E-4 2.376576537694928E-4 0.0 0.03188890398279055 9.506306150779712E-6 48-49 1.9963242916637395E-4 2.376576537694928E-4 0.0 0.038072756133872745 9.506306150779712E-6 50-51 1.9963242916637395E-4 2.6617657222183195E-4 0.0 0.044337411887236576 9.506306150779712E-6 52-53 1.9963242916637395E-4 2.6617657222183195E-4 0.0 0.050121999179986026 9.506306150779712E-6 54-55 2.0913873531715367E-4 2.709297252972218E-4 0.0 0.05535046756291487 9.506306150779712E-6 56-57 2.1864504146793337E-4 2.8518918452339134E-4 0.0 0.06002757018909849 9.506306150779712E-6 58-59 2.281513476187131E-4 2.8994233759878124E-4 0.0 0.06464763497837743 9.506306150779712E-6 60-61 2.376576537694928E-4 2.946954906741711E-4 0.0 0.06938652859454111 9.506306150779712E-6 62-63 2.376576537694928E-4 2.946954906741711E-4 0.0 0.07406363122072473 9.506306150779712E-6 64-65 2.376576537694928E-4 3.897585521819682E-4 0.0 0.07857912664234509 9.506306150779712E-6 66-67 2.6617657222183195E-4 3.897585521819682E-4 0.0 0.08339407070771503 9.506306150779712E-6 68-69 2.6617657222183195E-4 3.9451170525735805E-4 0.0 0.08825654630383885 9.506306150779712E-6 70-71 2.6617657222183195E-4 3.992648583327479E-4 0.0 0.09237753002020185 9.506306150779712E-6 72-73 2.709297252972218E-4 3.992648583327479E-4 0.0 0.09573800924450249 9.506306150779712E-6 74-75 2.7568287837261165E-4 4.0877116448352765E-4 0.0 0.09822390830293137 9.506306150779712E-6 76-77 2.7568287837261165E-4 4.3729008293586673E-4 0.0 0.10081912988209424 9.506306150779712E-6 78-79 2.7568287837261165E-4 4.467963890866465E-4 0.0 0.10253026498923459 9.506306150779712E-6 80-81 2.7568287837261165E-4 4.467963890866465E-4 0.0 0.10305786498060286 9.506306150779712E-6 82-83 2.8518918452339134E-4 4.467963890866465E-4 0.0 0.10359497127812191 9.506306150779712E-6 84-85 2.946954906741711E-4 4.5154954216203633E-4 0.0 0.1037375658703836 9.506306150779712E-6 86-87 2.946954906741711E-4 4.658090013882059E-4 0.0 0.10383738208496679 9.506306150779712E-6 88 2.946954906741711E-4 4.753153075389856E-4 0.0 0.10384688839111757 9.506306150779712E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13070 0.0 49.95548 1 GTATCAA 23585 0.0 37.544296 1 ATCAACG 27255 0.0 31.882725 3 TCAACGC 27350 0.0 31.74019 4 CAACGCA 27745 0.0 31.319649 5 AACGCAG 28780 0.0 30.298325 6 TATCAAC 29205 0.0 29.962315 2 ACGCAGA 32835 0.0 26.529867 7 CGCAGAG 33320 0.0 26.091394 8 GCAGAGT 39755 0.0 21.85714 9 GAGTACT 23215 0.0 20.016184 12-13 GTACATG 28815 0.0 19.234476 1 CAGAGTA 39290 0.0 19.150818 10-11 TACATGG 28425 0.0 18.871372 2 TGGTATC 6175 0.0 18.514313 2 GTGGTAT 6705 0.0 18.477146 1 ACATGGG 28420 0.0 18.385235 3 AGAGTAC 36100 0.0 18.380693 10-11 GTACTTT 26955 0.0 17.31978 14-15 AGTACTT 25545 0.0 16.335695 12-13 >>END_MODULE