##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139003_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9569832 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50931604650949 34.0 31.0 34.0 31.0 34.0 2 32.642558092973836 34.0 31.0 34.0 31.0 34.0 3 32.635528920465894 34.0 31.0 34.0 31.0 34.0 4 36.19510750031976 37.0 35.0 37.0 35.0 37.0 5 36.1355057225665 37.0 35.0 37.0 35.0 37.0 6 36.163328990519375 37.0 36.0 37.0 35.0 37.0 7 36.11245808703852 37.0 36.0 37.0 35.0 37.0 8 36.10076132997946 37.0 36.0 37.0 35.0 37.0 9 37.805979352615594 39.0 38.0 39.0 35.0 39.0 10-11 37.751099078855304 39.0 38.0 39.0 35.0 39.0 12-13 37.71999576377098 39.0 38.0 39.0 35.0 39.0 14-15 39.05631692384986 40.0 38.0 41.0 36.0 41.0 16-17 39.03438843022532 40.0 38.0 41.0 36.0 41.0 18-19 38.96622866524721 40.0 38.5 41.0 35.0 41.0 20-21 39.02646469009308 40.0 39.0 41.0 35.0 41.0 22-23 38.95950593412701 40.0 38.0 41.0 35.0 41.0 24-25 38.88480479603689 40.0 38.0 41.0 35.0 41.0 26-27 38.80396716533612 40.0 38.0 41.0 35.0 41.0 28-29 38.58996496956818 40.0 38.0 41.0 34.5 41.0 30-31 38.5175569449021 40.0 38.0 41.0 34.0 41.0 32-33 38.44726732816697 40.0 38.0 41.0 34.0 41.0 34-35 38.26143820269397 40.0 38.0 41.0 34.0 41.0 36-37 38.3802911543862 40.0 38.0 41.0 34.0 41.0 38-39 38.502277174292 40.0 38.0 41.0 34.0 41.0 40-41 38.498572534245426 40.0 38.0 41.0 34.0 41.0 42-43 38.373604322063684 40.0 38.0 41.0 34.0 41.0 44-45 38.31582142860983 40.0 38.0 41.0 34.0 41.0 46-47 38.32986580586932 40.0 38.0 41.0 34.0 41.0 48-49 38.208621784040204 40.0 38.0 41.0 33.0 41.0 50-51 38.156551667861194 40.0 37.5 41.0 33.0 41.0 52-53 38.088344009847845 40.0 37.0 41.0 33.0 41.0 54-55 37.98542641353811 40.0 37.0 41.0 33.0 41.0 56-57 37.8424005973806 40.0 37.0 41.0 33.0 41.0 58-59 37.694340975485936 39.5 36.0 41.0 33.0 41.0 60-61 37.523139158136814 39.0 36.0 41.0 33.0 41.0 62-63 37.31400207610277 39.0 35.5 41.0 32.0 41.0 64-65 37.080021110421086 39.0 35.0 40.0 32.0 41.0 66-67 36.810455893810726 38.0 35.0 40.0 32.0 41.0 68-69 36.501438387429474 37.5 35.0 40.0 31.0 41.0 70-71 36.21047042935517 37.0 35.0 39.5 31.0 41.0 72-73 35.888084977969285 36.5 35.0 39.0 31.0 41.0 74-75 35.56333943645011 36.0 34.0 39.0 31.0 40.0 76-77 34.542803241966524 35.0 33.5 37.0 29.5 39.0 78-79 34.851896267726865 35.0 34.0 37.0 30.0 39.0 80-81 34.693509024088364 35.0 34.0 37.0 30.0 39.0 82-83 34.427022778269546 35.0 34.0 36.5 30.0 39.0 84-85 34.15383209304065 35.0 34.0 36.0 30.0 37.0 86-87 33.90371037808954 35.0 34.0 36.0 30.0 37.0 88-89 33.65661136262019 35.0 33.5 35.0 30.0 37.0 90-91 33.52974071754029 35.0 33.0 35.0 30.0 36.0 92-93 33.45101790531953 35.0 33.0 35.0 30.0 36.0 94-95 33.36141311623575 35.0 33.0 35.0 30.0 36.0 96-97 33.34886442641056 35.0 33.0 35.0 30.0 35.5 98-99 33.38042939082864 34.5 33.0 35.0 30.0 35.0 100-101 32.16103557666392 33.0 31.0 34.5 27.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 0.0 15 0.0 16 0.0 17 2.0 18 1.0 19 20.0 20 62.0 21 314.0 22 1462.0 23 4741.0 24 11663.0 25 24240.0 26 42023.0 27 65238.0 28 93157.0 29 123675.0 30 158914.0 31 199843.0 32 251438.0 33 326258.0 34 451240.0 35 641179.0 36 1052611.0 37 2038879.0 38 2746818.0 39 1281022.0 40 55030.0 41 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.88320261521914 21.726657811754002 15.434748102604551 23.955391470422303 2 13.660651616658981 22.206248408409387 41.56827671633422 22.56482325859741 3 16.737056673316424 27.439155583249224 31.620433788582535 24.20335395485182 4 11.812891125924367 19.155546276372526 39.72687853298624 29.304684064716866 5 12.469842579519035 38.638458297491354 36.08026053670595 12.81143858628366 6 28.58651920825046 39.35569563984345 19.147256461319856 12.910528690586235 7 25.29620729886886 33.54503574613893 24.056934667354263 17.101822287637944 8 23.918255088680294 37.1823356256211 21.558125221400307 17.341284064298307 9 25.330276351965548 16.82180244517408 21.858203979209993 35.98971722365039 10-11 23.506944382763272 27.319669824545308 29.590078017133237 19.583307775558183 12-13 24.472885098272386 25.115895475677206 29.639857761318645 20.771361664731767 14-15 21.659326314216546 26.357811943644695 27.51615169254795 24.46671004959081 16-17 20.91533810862727 29.45670168241204 28.11335310223864 21.514607106722046 18-19 20.988091845737262 28.578311064910356 30.030317156137272 20.403279933215106 20-21 21.867389714490056 27.635538419152155 29.966372821377185 20.5306990449806 22-23 21.51962829702063 27.554769518495398 29.83260772381568 21.092994460668287 24-25 21.286001798949723 27.762121491469106 29.864180707097958 21.087696002483213 26-27 21.196192591946975 27.91504057807865 29.795835451911156 21.092931378063223 28-29 21.166422669011606 27.90561743529208 29.76094947020838 21.167010425487934 30-31 21.47342024102903 27.817633010394527 29.699917678831905 21.009029069744543 32-33 21.271030670005057 27.965986393483682 29.61266024241703 21.150322694094232 34-35 21.417970227543805 28.00657392702519 29.613701392412572 20.96175445301843 36-37 21.40808819000415 27.982574454753816 29.54159366325737 21.06774369198466 38-39 21.243515879861906 28.10840166770815 29.544922511614914 21.10315994081503 40-41 21.437048155442152 28.02960804894081 29.39314421953209 21.140199576084953 42-43 21.427603819334866 28.15710483683273 29.085007083784504 21.3302842600479 44-45 21.510730858941404 28.230077917646685 28.888148161429328 21.37104306198259 46-47 21.520276418084876 28.260134916364894 28.673437289748822 21.546151375801408 48-49 21.539634929273692 28.418880642360122 28.550921630249665 21.49056279811652 50-51 21.57716162671673 28.4930785959063 28.391779125246185 21.537980652130777 52-53 21.657052333780594 28.409552616897386 28.28698036101432 21.646414688307697 54-55 21.664540197753947 28.3314614996376 28.360979131811582 21.643019170796872 56-57 21.64691751693502 28.418142871181463 28.283265975966778 21.651673635916747 58-59 21.597220887020704 28.50777936038853 28.31987536810423 21.575124384486536 60-61 21.695384363202148 28.46552557028266 28.31548238000258 21.5236076865126 62-63 21.673503833284656 28.507468237713766 28.229098931770935 21.589928997230643 64-65 21.630623698274935 28.430392673009035 28.236626869893342 21.702356758822685 66-67 21.760327282957885 28.47322952591837 28.04800298470107 21.718440206422674 68-69 21.660719399738255 28.401082883618063 28.19642951175259 21.74176820489109 70-71 21.63527549504541 28.282597451846986 28.235939976177686 21.84618707692992 72-73 21.740060739880096 28.304668098442075 28.183735144054634 21.771536017623195 74-75 21.56802944593939 28.392256099059036 28.158496405371036 21.881218049630537 76-77 21.67481866760949 28.31507247308453 28.133528956146836 21.876579903159143 78-79 21.681491806234032 28.30365087342755 28.123840018617692 21.891017301720726 80-81 21.696939999226295 28.32857934983043 28.09617145288785 21.878309198055423 82-83 21.70253381919969 28.296777747594028 28.191594289280154 21.80909414392613 84-85 21.852183842748822 28.266944338540252 28.07472520476529 21.806146613945643 86-87 21.66437473831217 28.300075847667916 28.167576526551365 21.867972887468547 88-89 21.723639891301804 28.1963821276414 28.149822367192318 21.93015561386448 90-91 21.777885161832288 28.22528202585567 28.184985494555498 21.81184731775655 92-93 21.81517634837667 28.141966584622935 28.192061982469824 21.85079508453057 94-95 21.663013458590513 28.13323139832327 28.289558907012065 21.914196236074147 96-97 21.625018369346915 28.213592244266085 28.29316376240166 21.86822562398534 98-99 21.81395085099802 28.799171283757648 28.344389267406818 21.042488597837515 100-101 22.279202371115264 31.542935627949326 25.584609450858203 20.593252550077214 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2428.0 1 2227.0 2 3161.5 3 4605.0 4 6016.0 5 8678.0 6 11045.5 7 13744.0 8 16367.5 9 17286.0 10 16236.0 11 14556.5 12 15286.0 13 19805.0 14 31549.5 15 47763.5 16 60522.5 17 66982.0 18 67491.0 19 64081.0 20 58709.0 21 53399.5 22 50962.5 23 54362.5 24 63773.5 25 79079.5 26 98653.0 27 120044.5 28 143160.0 29 167651.5 30 190995.5 31 213438.5 32 236797.0 33 261206.0 34 285073.5 35 305146.5 36 326245.5 37 345060.5 38 356476.5 39 364346.5 40 372720.5 41 380480.0 42 383550.0 43 386133.0 44 388097.0 45 386710.0 46 382440.5 47 377493.0 48 371554.5 49 362125.5 50 350211.5 51 334893.5 52 316322.0 53 296986.5 54 277846.5 55 256284.5 56 233760.5 57 210614.5 58 186033.5 59 160376.0 60 134132.5 61 109722.5 62 85803.5 63 64417.0 64 48135.0 65 37040.5 66 28776.5 67 21853.5 68 16729.5 69 11732.0 70 7585.0 71 5311.0 72 3773.0 73 2674.5 74 1828.0 75 1152.5 76 698.0 77 451.0 78 305.0 79 211.5 80 149.5 81 105.0 82 73.0 83 50.5 84 36.5 85 28.0 86 21.5 87 16.5 88 12.5 89 8.0 90 4.5 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.1348512701163404E-5 2 3.1348512701163404E-5 3 5.747227328546624E-4 4 2.5078810160930723E-4 5 5.015762032186145E-4 6 3.9708116088140317E-4 7 0.0027900176304035433 8 6.478692624907104E-4 9 4.493286820500088E-4 10-11 1.1494454657093249E-4 12-13 2.089900846744227E-5 14-15 1.5151781138895645E-4 16-17 9.352306289180416E-4 18-19 3.1348512701163404E-5 20-21 1.044987495418383E-5 22-23 0.002894864327793953 24-25 0.0073334729289263635 26-27 0.036450922702549855 28-29 0.2809015076463999 30-31 0.24615651231107366 32-33 0.25307413809631757 34-35 0.13365615363208108 36-37 0.024356880308609285 38-39 0.015322256063226123 40-41 0.008776636369354232 42-43 0.005768388070003994 44-45 0.006437937871454754 46-47 0.001393880731881773 48-49 0.0019502148920736118 50-51 0.002788186136847975 52-53 0.0017738480067917542 54-55 2.1566383456540758E-4 56-57 0.0018085516448805828 58-59 0.0031928340102757293 60-61 0.012603949823932023 62-63 0.0078962113519671 64-65 0.0021930796837128625 66-67 0.0017415240741465545 68-69 0.002551225062606277 70-71 0.004324700729793248 72-73 0.003894142518457372 74-75 0.004034262171796093 76-77 0.0016448683793338736 78-79 9.558635730333299E-5 80-81 4.5132551078764686E-4 82-83 3.915258408033745E-5 84-85 0.0 86-87 1.3377011952761491E-5 88-89 0.0 90-91 5.777247096365926E-4 92-93 0.008963268414259491 94-95 0.0012861325071767615 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 209.0 20-21 667.0 22-23 1482.0 24-25 5327.0 26-27 5750.0 28-29 8235.0 30-31 18876.0 32-33 24301.0 34-35 34509.0 36-37 47860.0 38-39 58818.0 40-41 63178.0 42-43 75446.0 44-45 90704.0 46-47 89848.0 48-49 78090.0 50-51 70949.0 52-53 67905.0 54-55 72295.0 56-57 76284.0 58-59 75527.0 60-61 74960.0 62-63 73732.0 64-65 79339.0 66-67 83818.0 68-69 84861.0 70-71 84369.0 72-73 82710.0 74-75 84902.0 76-77 85991.0 78-79 90554.0 80-81 93158.0 82-83 91014.0 84-85 94569.0 86-87 98743.0 88-89 103525.0 90-91 111877.0 92-93 117164.0 94-95 129323.0 96-97 191720.0 98-99 809277.0 100-101 5937966.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.20912283921786 #Duplication Level Percentage of deduplicated Percentage of total 1 89.40744837141678 75.28922802649663 2 7.222374669279681 12.163796714324562 3 1.8321757980925195 4.62857750533845 4 0.6901458524882611 2.3246630747664283 5 0.32414788123682514 1.3648104374572003 6 0.1863236727690746 0.9414091828839141 7 0.10291298003680988 0.6066348244368789 8 0.06155140484177947 0.41465518489982683 9 0.036513200035655995 0.27672700923499405 >10 0.1337682352848216 1.7461961798071322 >50 0.0019144545829717424 0.10686947376993611 >100 6.608649833636239E-4 0.09512952693970048 >500 4.174385333380317E-5 0.022637818150290402 >1k 2.0871098101882372E-5 0.01866504149409528 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.089900846744227E-5 0.0 2.089900846744227E-5 0.0 3 0.0 2.089900846744227E-5 0.0 2.089900846744227E-5 0.0 4 0.0 3.1348512701163404E-5 0.0 2.089900846744227E-5 0.0 5 2.089900846744227E-5 3.1348512701163404E-5 0.0 2.089900846744227E-5 0.0 6 2.089900846744227E-5 3.1348512701163404E-5 0.0 2.089900846744227E-5 1.0449504233721135E-5 7 2.089900846744227E-5 3.1348512701163404E-5 0.0 2.089900846744227E-5 1.0449504233721135E-5 8 2.089900846744227E-5 3.1348512701163404E-5 0.0 2.089900846744227E-5 2.089900846744227E-5 9 2.089900846744227E-5 3.1348512701163404E-5 0.0 2.089900846744227E-5 2.089900846744227E-5 10-11 1.0449504233721135E-4 3.1348512701163404E-5 0.0 3.1348512701163404E-5 3.1348512701163404E-5 12-13 1.5674256350581704E-4 3.1348512701163404E-5 0.0 4.179801693488454E-5 3.1348512701163404E-5 14-15 1.6719206773953816E-4 6.269702540232681E-5 0.0 5.224752116860567E-5 4.702276905174511E-5 16-17 1.776415719732593E-4 6.269702540232681E-5 0.0 7.314652963604794E-5 6.269702540232681E-5 18-19 1.9854058044070156E-4 6.269702540232681E-5 0.0 8.359603386976908E-5 7.83712817529085E-5 20-21 2.089900846744227E-4 6.269702540232681E-5 0.0 9.404553810349022E-5 8.359603386976908E-5 22-23 2.1943958890814386E-4 8.882078598662966E-5 0.0 1.462930592720959E-4 9.927029022035078E-5 24-25 2.8736136642733127E-4 1.1494454657093249E-4 0.0 1.8286632409011987E-4 1.2016929868779305E-4 26-27 3.50058391829658E-4 1.2539405080465361E-4 0.0 2.612376058430284E-4 1.2539405080465361E-4 28-29 3.552831439465186E-4 1.2539405080465361E-4 0.0 7.00116783659316E-4 1.306188029215142E-4 30-31 3.552831439465186E-4 1.462930592720959E-4 0.0 0.001812988984550617 1.3584355503837477E-4 32-33 3.6573264818023975E-4 1.462930592720959E-4 0.0 0.0047179511615250925 1.3584355503837477E-4 34-35 4.0753066511512424E-4 1.619673156226776E-4 0.0 0.008437974668729817 1.462930592720959E-4 36-37 4.3887917781628767E-4 1.8809107620698044E-4 0.0 0.01528239994181716 1.5674256350581704E-4 38-39 4.3887917781628767E-4 1.93315828323841E-4 0.0 0.022858290511264985 1.5674256350581704E-4 40-41 4.3887917781628767E-4 2.1943958890814383E-4 0.0 0.032973410609507044 1.619673156226776E-4 42-43 4.545534341668694E-4 2.403385973755861E-4 0.0 0.040277614068878115 1.776415719732593E-4 44-45 4.702276905174511E-4 2.7168711007674953E-4 0.0 0.047916201663728265 1.9854058044070156E-4 46-47 4.859019468680328E-4 2.8213661431047065E-4 0.0 0.05655271691289879 2.2988909314186498E-4 48-49 4.911266989848933E-4 2.8213661431047065E-4 0.0 0.06460405992498092 2.5078810160930723E-4 50-51 4.911266989848933E-4 2.9781087066105234E-4 0.0 0.07214337722961073 2.5078810160930723E-4 52-53 5.172504595691962E-4 3.030356227779129E-4 0.0 0.07942668168051435 2.7691186219361004E-4 54-55 5.224752116860568E-4 3.1870987912849464E-4 0.0 0.08695032472879356 3.1870987912849464E-4 56-57 5.224752116860568E-4 3.4483363971279745E-4 0.0 0.09346036586640183 3.343841354790763E-4 58-59 5.329247159197779E-4 3.4483363971279745E-4 0.0 0.09951585356984324 3.343841354790763E-4 60-61 5.485989722703597E-4 3.50058391829658E-4 0.0 0.10554521751270032 3.552831439465186E-4 62-63 5.538237243872202E-4 3.7618215241396087E-4 0.0 0.11120362405526033 3.7618215241396087E-4 64-65 5.538237243872202E-4 4.336544256994271E-4 0.0 0.11747855134760986 3.8140690453082143E-4 66-67 5.747227328546624E-4 4.3887917781628767E-4 0.0 0.12339819549601289 3.970811608814031E-4 68-69 5.747227328546624E-4 4.545534341668694E-4 0.0 0.1292812663795979 4.179801693488454E-4 70-71 5.747227328546624E-4 4.6500293840059053E-4 0.0 0.13468888482054858 4.179801693488454E-4 72-73 5.799474849715229E-4 4.702276905174511E-4 0.0 0.1390985756071789 4.806771947511722E-4 74-75 5.851722370883836E-4 4.806771947511722E-4 0.0 0.14273500308051384 4.911266989848933E-4 76-77 5.956217413221047E-4 4.859019468680328E-4 0.0 0.14619378898187554 4.96351451101754E-4 78-79 6.060712455558258E-4 4.96351451101754E-4 0.0 0.1491666729363692 5.015762032186145E-4 80-81 6.060712455558258E-4 5.06800955335475E-4 0.0 0.15038926493171456 5.120257074523356E-4 82-83 6.16520749789547E-4 5.120257074523356E-4 0.0 0.15071842431507682 5.538237243872202E-4 84-85 6.269702540232682E-4 5.224752116860568E-4 0.0 0.15109983121960763 5.538237243872202E-4 86-87 6.269702540232682E-4 5.224752116860568E-4 0.0 0.15121477576617856 5.538237243872202E-4 88-89 6.269702540232682E-4 5.329247159197779E-4 0.0 0.1512461242788797 5.538237243872202E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13240 0.0 51.75606 1 GTATCAA 24665 0.0 37.660057 1 ATCAACG 31170 0.0 29.253216 3 TCAACGC 31330 0.0 29.17146 4 CAACGCA 31970 0.0 28.614027 5 TATCAAC 32450 0.0 28.243954 2 AACGCAG 32765 0.0 27.932327 6 ACGCAGA 37585 0.0 24.338736 7 CGCAGAG 38125 0.0 23.993502 8 GTACATG 30865 0.0 20.998833 1 TACATGG 30605 0.0 20.926384 2 GCAGAGT 43900 0.0 20.739885 9 ACATGGG 30965 0.0 20.187033 3 GAGTACT 26605 0.0 19.62082 12-13 GGACCGA 1740 0.0 19.371706 6 AGAGTAC 40335 0.0 19.346754 10-11 AGGACCG 2170 0.0 19.269176 5 ACCGAAC 1515 0.0 19.150272 8 GTGGTAT 6420 0.0 19.074383 1 CCGAACC 1540 0.0 18.562244 9 >>END_MODULE