##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139002_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16584694 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.43576257722934 34.0 31.0 34.0 31.0 34.0 2 32.58123918355081 34.0 31.0 34.0 31.0 34.0 3 33.249899817265245 34.0 31.0 34.0 31.0 37.0 4 36.07403157393196 37.0 35.0 37.0 35.0 37.0 5 36.02083758675318 37.0 35.0 37.0 35.0 37.0 6 36.0508807096471 37.0 35.0 37.0 35.0 37.0 7 36.057741674341415 37.0 35.0 37.0 35.0 37.0 8 36.32090836285553 37.0 36.0 37.0 35.0 39.0 9 37.637676763888436 39.0 37.0 39.0 35.0 39.0 10-11 37.586481004714344 39.0 37.0 39.0 35.0 39.0 12-13 37.70929674674733 39.0 37.0 39.0 35.0 39.5 14-15 38.79092170769023 40.0 38.0 41.0 35.0 41.0 16-17 38.74581128840846 40.0 38.0 41.0 34.5 41.0 18-19 38.7189152540288 40.0 38.0 41.0 34.0 41.0 20-21 38.76109195443731 40.0 38.0 41.0 34.0 41.0 22-23 38.680067992983844 40.0 38.0 41.0 34.0 41.0 24-25 38.576202051590855 40.0 38.0 41.0 34.0 41.0 26-27 38.4908410134452 40.0 38.0 41.0 34.0 41.0 28-29 38.26865079586971 40.0 38.0 41.0 34.0 41.0 30-31 38.1864204468511 40.0 38.0 41.0 34.0 41.0 32-33 38.07125739868812 40.0 37.0 41.0 33.5 41.0 34-35 37.902076180150516 40.0 37.0 41.0 33.0 41.0 36-37 38.039058701140846 40.0 37.0 41.0 33.0 41.0 38-39 38.13330864682129 40.0 38.0 41.0 33.0 41.0 40-41 38.10659371749297 40.0 37.0 41.0 33.0 41.0 42-43 37.999062347215926 40.0 37.0 41.0 33.0 41.0 44-45 37.94089609550424 40.0 37.0 41.0 33.0 41.0 46-47 37.92934070131281 40.0 37.0 41.0 33.0 41.0 48-49 37.8248851570195 40.0 37.0 41.0 33.0 41.0 50-51 37.74172307606459 40.0 37.0 41.0 33.0 41.0 52-53 37.65563671917366 40.0 36.5 41.0 33.0 41.0 54-55 37.535505096980124 39.5 36.0 41.0 32.0 41.0 56-57 37.36814758645461 39.0 36.0 41.0 32.0 41.0 58-59 37.200550643722934 39.0 35.5 40.5 32.0 41.0 60-61 37.00466890671139 39.0 35.0 40.0 31.0 41.0 62-63 36.777338222170954 38.0 35.0 40.0 31.0 41.0 64-65 36.51850964909281 38.0 35.0 40.0 31.0 41.0 66-67 36.22847378783989 37.0 35.0 40.0 31.0 41.0 68-69 35.92406160216627 37.0 34.0 39.5 31.0 41.0 70-71 35.6220274885097 36.0 34.0 39.0 30.0 40.5 72-73 35.2968553512178 36.0 34.0 39.0 30.0 40.0 74-75 34.878374343192874 35.0 34.0 38.0 29.5 40.0 76-77 34.10625745366223 35.0 32.5 37.0 29.0 39.0 78-79 34.383015242709455 35.0 34.0 37.0 29.5 39.0 80-81 34.23692048079231 35.0 34.0 36.5 30.0 39.0 82-83 33.98870096926247 35.0 33.5 36.0 29.0 37.5 84-85 33.731624371420025 35.0 33.0 36.0 29.0 37.0 86-87 33.49371267362518 35.0 33.0 35.0 29.0 37.0 88-89 33.274467190750514 35.0 33.0 35.0 29.0 36.0 90-91 33.16539575993086 35.0 33.0 35.0 29.0 36.0 92-93 33.096873851598005 34.0 33.0 35.0 29.0 36.0 94-95 33.027729660243196 34.0 33.0 35.0 29.0 35.0 96-97 33.03697075989577 34.0 33.0 35.0 29.0 35.0 98-99 33.053527359505495 34.0 32.5 35.0 29.0 35.0 100-101 31.57288054682661 33.0 30.5 34.5 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 10.0 19 29.0 20 132.0 21 771.0 22 3335.0 23 10563.0 24 25893.0 25 51740.0 26 89020.0 27 136114.0 28 190821.0 29 252035.0 30 319791.0 31 400096.0 32 499218.0 33 647866.0 34 893799.0 35 1295429.0 36 2163075.0 37 3857590.0 38 4074488.0 39 1603543.0 40 69333.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.89031823267835 0.01915622294756326 27.529427895814024 30.561097648560064 2 14.421486830910716 25.766554293814707 37.16586462076122 22.646094254513354 3 15.18755054003941 25.90023903467688 34.38381445270116 24.528395972582555 4 12.807711071541778 24.772710321150136 36.85412428692444 25.565454320383648 5 17.193993960676867 36.90707787446698 31.98523453026415 13.91369363459201 6 26.9580936531481 38.37198967717039 20.320164489948507 14.349752179733006 7 25.365422162299705 33.454581962063095 22.767592155992567 18.41240371964463 8 24.043833409407878 32.09310318421718 22.386586118093824 21.476477288281124 9 23.696888073462645 20.579836313660238 23.880358977815987 31.84291663506113 10-11 24.528595007994728 26.374310673984745 28.61079666424636 20.486297653774162 12-13 24.876476407210845 24.801440316687334 28.680883677870057 21.64119959823177 14-15 22.259886535540108 26.993699510773943 27.11491088649999 23.631503067185953 16-17 20.94584733168029 29.217924094703218 28.02148807496858 21.814740498647915 18-19 21.130533346562405 28.000868632691283 30.247965811591666 20.620632209154643 20-21 22.04257130966019 27.121775723510382 30.188950082484123 20.64670288434531 22-23 21.889579736897716 26.987840831127624 29.961383448467522 21.161195983507135 24-25 21.37354840219871 27.346073078335724 30.19268526468659 21.087693254778973 26-27 21.412746696125236 27.485831865644133 30.01730546063125 21.08411597759938 28-29 21.40220635746334 27.350605788463646 29.99515841578762 21.252029438285394 30-31 21.499183219047058 27.362604541110496 30.01546918005524 21.1227430597872 32-33 21.397064883055016 27.623291612385355 29.84077089635091 21.138872608208718 34-35 21.648311614978617 27.430920236491684 29.747147536175504 21.173620612354192 36-37 21.53121240986699 27.593304545554876 29.693436023317112 21.182047021261024 38-39 21.417430305499824 27.825331426881366 29.608379505985837 21.148858761632976 40-41 21.68784645950247 27.521806435459467 29.369538828505203 21.42080827653286 42-43 21.569544296433758 27.752543739121784 29.16016401698331 21.517747947461153 44-45 21.742414465567744 28.022012930257826 28.66642698950429 21.569145614670134 46-47 21.930230004242574 27.913479598751263 28.31807013924855 21.838220257757616 48-49 21.858249488628122 28.216023092082203 28.125800469416017 21.799926949873655 50-51 21.96754689977588 28.395965620070086 27.810455683128986 21.826031797025045 52-53 22.108409852680985 28.12562114038623 27.73239584023033 22.033573166702457 54-55 21.994400264335347 28.16442453648151 27.866659710473296 21.97451548870985 56-57 21.962607423385712 28.430049045305513 27.687476590798298 21.919866940510474 58-59 22.082123659452883 28.174723268610663 27.735914935870948 22.00723813606551 60-61 22.016094912226936 28.265716243528953 27.836354841647342 21.88183400259677 62-63 22.024882556129423 28.447400148126878 27.722643110976097 21.805074184767605 64-65 22.18705317485138 28.167185334290163 27.576681586761275 22.06907990409718 66-67 21.985315249471096 28.288887305483158 27.66874948292393 22.05704796212182 68-69 22.068333994552162 28.350943354581005 27.59348936211154 21.987233288755302 70-71 22.072429989431395 28.03030920750342 27.649003306765913 22.248257496299274 72-73 22.037403452668684 28.13663740961469 27.663351712831417 22.162607424885213 74-75 21.981893010856645 28.36631213069983 27.594988706899805 22.05680615154372 76-77 22.19895783690778 27.983859916592184 27.517026182789646 22.30015606371039 78-79 21.927646691441975 28.15470059323885 27.675148758921083 22.242503956398092 80-81 22.069035089002924 28.193239078960968 27.596672727497428 22.141053104538678 82-83 22.191407846648474 27.898235835077127 27.68221007618945 22.228146242084943 84-85 22.110287273345833 27.981254483126015 27.77440232897667 22.13405591455148 86-87 22.101550812172015 28.036924985983973 27.693617197871234 22.167907003972772 88-89 22.172920303240897 27.794469381874894 27.69974313296749 22.332867181916715 90-91 22.14259143291286 27.852342209188315 27.794763488949098 22.210302868949736 92-93 22.163901072659232 27.8650323353908 27.811995341518507 22.159071250431456 94-95 22.092507852390707 27.690482578833926 27.88953231308196 22.327477255693402 96-97 21.967053771426983 27.877750735636326 27.981227375976204 22.173968116960488 98-99 22.4282661838734 28.830749451310062 27.858115247298066 20.882869117518474 100-101 22.72223689936838 30.87634783200461 24.749760189227228 21.65165507939978 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6285.0 1 5314.0 2 7165.5 3 10273.5 4 13084.0 5 19287.5 6 24073.0 7 29164.5 8 33853.0 9 34017.0 10 30277.5 11 26019.5 12 28245.5 13 39154.0 14 69929.5 15 119081.5 16 161721.5 17 182345.0 18 181248.5 19 166612.0 20 145505.0 21 123065.0 22 106555.0 23 103089.0 24 112587.0 25 133624.0 26 161587.0 27 193314.0 28 231461.5 29 271225.5 30 309598.5 31 346850.5 32 383490.5 33 420309.0 34 453916.5 35 482364.5 36 510739.5 37 537483.0 38 560803.5 39 579563.0 40 591499.0 41 603421.0 42 612646.5 43 621015.0 44 631494.5 45 640844.5 46 650557.5 47 661138.0 48 666638.5 49 659745.5 50 645673.5 51 628673.0 52 601892.0 53 564204.0 54 528017.5 55 491978.0 56 450757.5 57 407716.0 58 362943.5 59 312615.0 60 258744.5 61 212021.5 62 170307.0 63 132592.0 64 99947.5 65 73455.0 66 55181.5 67 41274.5 68 30016.5 69 21186.0 70 14867.0 71 10447.0 72 7153.5 73 4773.0 74 3238.0 75 2383.5 76 1874.5 77 1208.5 78 731.0 79 537.0 80 346.0 81 221.5 82 162.5 83 110.5 84 73.0 85 54.5 86 42.0 87 31.5 88 18.0 89 8.0 90 5.5 91 4.5 92 3.5 93 3.0 94 2.5 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 3.014828009488749E-5 2 1.4471174445545996E-4 3 4.2810557734740233E-4 4 1.2662277639852745E-4 5 3.256014250247849E-4 6 5.667876657838847E-4 7 0.0018933119899589344 8 5.064911055941098E-4 9 2.894234889109199E-4 10-11 9.647449630363997E-5 12-13 4.823724815181999E-5 14-15 1.7787485255983622E-4 16-17 8.833446067802034E-4 18-19 5.125207616130873E-5 20-21 1.7486916620632862E-4 22-23 0.0031691453695424023 24-25 0.010227888886217888 26-27 0.06828193513545094 28-29 0.25235025392530996 30-31 0.22732097180396013 32-33 0.2257387261612435 34-35 0.09712022678543365 36-37 0.019687521348398063 38-39 0.011870855426143414 40-41 0.0060453846724412685 42-43 0.003647409199652872 44-45 0.004206955710508426 46-47 6.931427388842185E-4 48-49 0.0010787195598824196 50-51 0.0016786220410049228 52-53 6.933229972346599E-4 54-55 1.0268655862097385E-4 56-57 9.789586372601748E-4 58-59 0.0024575791166860585 60-61 0.009622914414431881 62-63 0.005583877249423937 64-65 0.0012782352732314498 66-67 0.0018547900934051294 68-69 0.0024724350900014124 70-71 0.00386937864573607 72-73 0.003540142375920089 74-75 0.003151905692641514 76-77 0.0013166950908835842 78-79 1.0855844455364342E-4 80-81 3.3739968188138306E-4 82-83 3.840116444618973E-6 84-85 3.890757944159297E-6 86-87 0.0 88-89 6.405557718098531E-5 90-91 0.0014196176680815115 92-93 0.006977302578133995 94-95 8.312129667197518E-4 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 511.0 20-21 1723.0 22-23 3393.0 24-25 7666.0 26-27 12100.0 28-29 20900.0 30-31 35717.0 32-33 49776.0 34-35 72721.0 36-37 94559.0 38-39 111128.0 40-41 126196.0 42-43 159320.0 44-45 188873.0 46-47 180213.0 48-49 148034.0 50-51 125126.0 52-53 120820.0 54-55 127862.0 56-57 133408.0 58-59 132555.0 60-61 130821.0 62-63 132327.0 64-65 144183.0 66-67 150775.0 68-69 153457.0 70-71 155487.0 72-73 152243.0 74-75 155013.0 76-77 159491.0 78-79 166886.0 80-81 168798.0 82-83 168737.0 84-85 174227.0 86-87 182637.0 88-89 194161.0 90-91 207000.0 92-93 223385.0 94-95 266824.0 96-97 452848.0 98-99 1672044.0 100-101 9520749.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.79730351528868 #Duplication Level Percentage of deduplicated Percentage of total 1 87.72649145256152 70.8806395622399 2 7.808005004913975 12.617315004618549 3 2.3172496482422513 5.616825694491752 4 0.9141387449586532 2.954397825260375 5 0.45635664312598506 1.8436193102934244 6 0.24754331546907224 1.200049943588129 7 0.15231907877617232 0.8614879587333292 8 0.0972394774225995 0.6285350056785466 9 0.06747360539960744 0.49065168372686124 >10 0.2082175254995725 2.557842761267505 >50 0.003993737144948694 0.21845645890791016 >100 9.418537775911265E-4 0.11519626754377711 >500 2.991270800999166E-5 0.014982523649935934 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2059312037954996E-4 0.0 0.0 0.0 3 0.0 1.2662277639852745E-4 0.0 1.2059312037954997E-5 0.0 4 0.0 1.2662277639852745E-4 0.0 1.2059312037954997E-5 0.0 5 0.0 1.3265243241750496E-4 0.0 1.2059312037954997E-5 0.0 6 6.632621620875248E-5 1.3265243241750496E-4 0.0 1.2059312037954997E-5 0.0 7 6.632621620875248E-5 1.4471174445545996E-4 0.0 1.8088968056932494E-5 0.0 8 7.838552824670747E-5 1.5074140047443747E-4 0.0 1.8088968056932494E-5 0.0 9 8.441518426568497E-5 2.472158967780774E-4 0.0 1.8088968056932494E-5 6.0296560189774984E-6 10-11 8.743001227517372E-5 2.472158967780774E-4 0.0 3.0148280094887493E-5 6.0296560189774984E-6 12-13 9.044484028466248E-5 2.472158967780774E-4 0.0 3.617793611386499E-5 9.044484028466247E-6 14-15 1.0250415232261747E-4 3.376607370627399E-4 0.0 4.522242014233124E-5 2.713345208539874E-5 16-17 1.8993416459779118E-4 3.919276412335374E-4 0.0 5.728173218028623E-5 3.617793611386499E-5 18-19 2.019934766357462E-4 3.919276412335374E-4 0.0 9.345966829415122E-5 3.617793611386499E-5 20-21 2.1103796066421242E-4 3.979572972525149E-4 0.0 1.3868208843648245E-4 3.617793611386499E-5 22-23 2.2912692872114493E-4 5.004614495751323E-4 0.0 1.5978588450290372E-4 3.919276412335374E-5 24-25 2.4118624075909992E-4 5.275949016605311E-4 0.0 2.0500830464523494E-4 4.2207592132842485E-5 26-27 2.4118624075909992E-4 5.547283537459298E-4 0.0 3.3464590905325114E-4 4.2207592132842485E-5 28-29 2.5023072478756617E-4 5.667876657838849E-4 0.0 9.49670822988956E-4 4.2207592132842485E-5 30-31 2.713345208539874E-4 6.60247334078036E-4 0.0 0.0025294406999610605 4.2207592132842485E-5 32-33 2.954531449298974E-4 6.72306646115991E-4 0.0 0.0053633790288804845 4.2207592132842485E-5 34-35 3.075124569678524E-4 7.597366583911647E-4 0.0 0.009632375490316553 5.426690417079748E-5 36-37 3.1655694099631864E-4 8.441518426568497E-4 0.0 0.016397649543609307 5.426690417079748E-5 38-39 3.3464590905325114E-4 8.501814986758273E-4 0.0 0.024073401655767664 5.426690417079748E-5 40-41 3.4670522109120616E-4 8.984187468276473E-4 0.0 0.03302442601593976 5.426690417079748E-5 42-43 3.557497051196724E-4 0.0010069525551692424 0.0 0.03997058974980183 5.426690417079748E-5 44-45 3.7082384516711614E-4 0.0011154863635108373 0.0 0.04790561707077622 5.426690417079748E-5 46-47 3.858979852145599E-4 0.0011154863635108373 0.0 0.055928074404025786 6.331138819926373E-5 48-49 4.0700178128098114E-4 0.0011245308475393034 0.0 0.06355558926803231 6.632621620875248E-5 50-51 4.3413523336637987E-4 0.0012873315600516958 0.0 0.07070374647853014 6.632621620875248E-5 52-53 4.4317971739484614E-4 0.0013024057000991397 0.0 0.07774638470869585 7.838552824670749E-5 54-55 4.461945454043349E-4 0.0013144650121370946 0.0 0.0851869802361141 9.044484028466248E-5 56-57 4.461945454043349E-4 0.0013506429482509595 0.0 0.0920185805056156 9.044484028466248E-5 58-59 4.5222420142331237E-4 0.0013657170882984033 0.0 0.09795477685629894 9.345966829415122E-5 60-61 4.6428351346126733E-4 0.001392850540383802 0.0 0.10361963868612831 9.647449630363997E-5 62-63 5.095059336035987E-4 0.0014109395084407346 0.0 0.10939001949628978 9.647449630363997E-5 64-65 5.245800736510424E-4 0.0016038885010480144 0.0 0.11524180066270742 9.647449630363997E-5 66-67 5.607580097649074E-4 0.001621977469104947 0.0 0.12143124256618784 9.647449630363997E-5 68-69 5.637728377743961E-4 0.0016732295452662558 0.0 0.12737648340089963 9.647449630363997E-5 70-71 5.698024937933736E-4 0.001706392653370632 0.0 0.13252580964110644 1.0853380834159497E-4 72-73 6.331138819926374E-4 0.001718451965408587 0.0 0.13661090159396366 1.3868208843648245E-4 74-75 6.512028500495698E-4 0.0017516150735129633 0.0 0.13993927171643927 1.3868208843648245E-4 76-77 6.60247334078036E-4 0.0018601488818545582 0.0 0.14291490696180464 1.3868208843648245E-4 78-79 6.662769900970135E-4 0.0019114009580158669 0.0 0.14544434766176573 1.3868208843648245E-4 80-81 6.692918181065023E-4 0.0019174306140348444 0.0 0.14653571540120064 1.477265724649487E-4 82-83 6.692918181065023E-4 0.0019264750980633105 0.0 0.14699095443063345 1.5677105649341495E-4 84-85 6.813511301444572E-4 0.0019415492381107545 0.0 0.14739795621191443 1.5677105649341495E-4 86-87 6.813511301444572E-4 0.0019716975182056417 0.0 0.1475215641603035 1.5677105649341495E-4 88-89 6.813511301444572E-4 0.002007875454319507 0.0 0.14756377175243632 1.5677105649341495E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 27780 0.0 55.67226 1 GTATCAA 52635 0.0 38.433186 1 ATCAACG 68455 0.0 29.225332 3 TATCAAC 72265 0.0 27.824377 2 TCAACGC 72075 0.0 27.780851 4 CAACGCA 73700 0.0 27.139742 5 AACGCAG 74380 0.0 26.925598 6 ACGCAGA 74920 0.0 26.720205 7 GTGGTAT 11085 0.0 24.58312 1 TGGTATC 11185 0.0 23.045517 2 CGCAGAG 89535 0.0 22.362635 8 GTACATG 62890 0.0 20.794497 1 TACATGG 63240 0.0 20.266611 2 GCAGAGT 99000 0.0 20.109646 9 ACATGGG 63050 0.0 19.893475 3 AGAGTAC 91675 0.0 19.559736 10-11 GAGTACT 61190 0.0 19.300037 12-13 AGTACTT 65710 0.0 18.49162 12-13 CAGAGTA 96580 0.0 18.17606 10-11 GTACTTT 67770 0.0 17.427055 14-15 >>END_MODULE